genome.fa.s9.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  157  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51314920--51314971	15	3.6	15	80	12	56	44	0	1	53	1.11
51314858--51315087	120	1.9	120	100	0	460	41	1	6	49	1.40
51314868--51315055	61	3.1	61	70	14	208	42	1	7	48	1.40
51315049--51315090	15	2.7	16	82	14	52	45	0	2	52	1.13
51315040--51315081	15	2.9	15	82	10	52	47	0	0	52	1.00
51315216--51315325	45	2.6	43	79	11	120	32	29	5	32	1.80
51315306--51315371	16	4.1	16	94	0	114	34	36	0	28	1.58
51315856--51316240	144	2.7	144	81	4	470	24	28	17	29	1.98
51315859--51316230	48	7.8	48	77	6	308	23	28	18	29	1.98
51322197--51322253	24	2.3	25	93	3	98	59	17	0	22	1.37
51323587--51323646	21	2.8	22	82	10	88	60	0	0	40	0.97
51323579--51323640	29	2.1	29	82	5	72	66	0	0	33	0.92
51324522--51324553	7	4.6	7	100	0	64	40	0	0	59	0.97
51325482--51325543	30	2.1	30	84	3	90	54	4	16	24	1.61
51343087--51343228	55	2.6	55	78	4	133	25	26	29	18	1.98
51350748--51350774	6	4.5	6	100	0	54	14	18	18	48	1.82
51355400--51355456	5	10.6	5	75	20	53	7	17	0	75	1.02
51356000--51356162	63	2.6	63	80	1	202	22	21	29	26	1.99
51371178--51371793	47	12.9	47	94	2	1029	32	8	29	30	1.86
51371178--51371793	143	4.3	143	95	2	1064	32	8	29	30	1.86
51373167--51373438	120	2.3	120	88	0	391	25	20	27	26	1.99
51373176--51373438	40	6.6	40	85	0	337	25	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51377126--51377788	49	13.8	49	94	2	1143	32	7	29	30	1.86
51377126--51377788	96	6.9	97	95	2	1112	32	7	29	30	1.86
51377126--51377788	145	4.6	145	95	1	1140	32	7	29	30	1.86
51379016--51379048	13	2.6	13	90	4	50	39	0	12	48	1.40
51379329--51379353	5	5.0	5	100	0	50	40	0	0	60	0.97
51382036--51382113	37	2.1	36	85	2	102	25	30	17	25	1.97
51382232--51382769	47	11.3	47	94	2	914	29	30	8	31	1.87
51382232--51382769	96	5.6	95	95	1	920	29	30	8	31	1.87
51388320--51388349	14	2.1	15	93	6	53	20	3	0	76	0.92
51391277--51391315	13	3.1	13	88	3	53	41	0	10	48	1.37
51395693--51395743	21	2.4	22	87	12	79	60	5	1	31	1.31
51395837--51395873	16	2.3	17	81	13	51	59	0	2	37	1.12
51400040--51400096	28	2.0	28	100	0	114	43	10	17	28	1.82
51404842--51404925	34	2.5	34	86	0	114	27	23	27	21	1.99
51413820--51414004	79	2.3	81	82	7	218	24	22	27	25	2.00
51413821--51414004	40	4.6	40	80	9	198	25	22	27	25	2.00
51413873--51414037	79	2.1	79	83	6	201	26	21	27	24	1.99
51415409--51415449	14	2.9	15	75	10	50	60	7	2	29	1.36
51417154--51417198	18	2.5	18	85	7	56	48	0	4	46	1.22
51423687--51423872	104	1.8	105	89	3	288	51	5	3	39	1.42
51427990--51428082	40	2.4	41	77	13	99	69	1	8	20	1.20
51439420--51439552	50	2.7	50	90	3	198	24	17	30	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51443048--51443187	50	2.8	50	88	3	194	24	17	29	29	1.97
51446592--51446785	47	4.1	47	88	0	271	32	10	28	27	1.90
51446621--51446692	22	3.1	22	64	24	58	33	13	29	23	1.93
51446755--51446987	48	4.8	48	91	4	387	36	6	26	31	1.82
51446756--51447027	146	1.9	143	84	7	363	34	8	27	29	1.85
51447133--51447241	37	2.9	37	94	0	182	22	18	31	27	1.97
51448999--51449301	40	7.6	40	89	2	396	24	20	27	27	1.99
51456286--51456588	40	7.6	40	90	2	405	24	20	27	27	1.99
51458241--51458280	16	2.5	16	95	0	71	35	27	30	7	1.84
51458684--51458816	62	2.1	62	88	0	194	24	24	23	27	2.00
51466751--51466816	23	2.8	24	70	21	66	21	9	27	42	1.83
51467934--51467974	12	3.3	13	80	10	50	65	0	2	31	1.05
51467858--51468115	126	2.0	128	93	3	450	54	10	6	28	1.59
51472043--51472115	38	1.9	38	83	5	94	35	17	17	28	1.93
51472248--51472314	22	3.0	22	70	19	59	34	22	16	26	1.95
51473852--51474024	91	1.9	91	83	4	224	38	13	20	27	1.91
51483053--51483111	28	2.1	28	100	0	118	27	3	20	49	1.65
51483064--51483118	28	2.0	26	86	6	74	34	3	16	45	1.65
51485381--51485436	24	2.3	24	81	0	67	16	41	3	39	1.65
51491727--51491779	27	2.0	27	81	7	63	32	18	18	30	1.96
51496729--51497500	268	3.0	251	88	7	1145	31	11	19	38	1.86
51501020--51501064	23	2.0	23	86	0	63	33	17	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51515559--51515644	38	2.3	38	85	0	109	37	15	11	36	1.83
51517573--51517635	30	2.1	30	85	11	85	63	9	11	15	1.51
51517551--51517911	28	13.0	28	68	12	77	57	6	14	21	1.60
51517697--51517911	29	7.8	29	72	11	116	57	6	13	22	1.58
51517753--51517796	23	1.9	23	85	0	61	61	9	9	20	1.53
51520358--51520414	26	2.2	26	87	0	78	31	14	12	42	1.82
51520563--51520597	6	5.8	6	89	0	52	20	25	0	54	1.45
51520563--51520597	18	1.9	18	94	0	61	20	25	0	54	1.45
51533566--51533643	25	3.1	25	92	0	120	34	14	8	42	1.77
51534602--51534634	14	2.2	16	89	10	52	42	3	6	48	1.43
51538303--51538359	26	2.2	26	81	15	73	47	17	12	22	1.81
51540558--51540614	25	2.5	22	76	17	64	38	10	12	38	1.77
51541623--51541648	12	2.2	12	100	0	52	26	26	30	15	1.96
51543238--51543294	25	2.5	22	76	17	64	38	10	12	38	1.77
51544303--51544328	12	2.2	12	100	0	52	26	26	30	15	1.96
51545918--51545974	25	2.5	22	76	17	64	38	10	12	38	1.77
51551058--51551083	5	5.2	5	100	0	52	0	19	0	80	0.71
51553877--51553959	42	2.0	42	97	0	157	26	21	1	50	1.56
51558273--51558428	43	3.7	42	78	10	156	33	26	14	25	1.94
51560943--51560982	20	2.0	20	100	0	80	40	15	0	45	1.46
51563201--51563310	26	4.2	26	95	0	175	34	5	23	36	1.78
51568970--51569079	26	4.2	26	97	0	184	33	5	24	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51571817--51571854	3	12.7	3	100	0	76	34	0	0	65	0.93
51582944--51583046	50	2.1	50	96	0	188	42	11	15	30	1.82
51593592--51593651	13	4.8	12	74	15	50	58	3	1	36	1.25
51593606--51593667	12	5.0	12	79	14	63	53	4	4	37	1.44
51593586--51593663	38	2.1	38	95	0	138	56	5	2	35	1.35
51594192--51594272	23	3.5	23	83	5	92	39	12	12	35	1.81
51594217--51594255	12	3.3	12	78	7	53	41	15	12	30	1.85
51594712--51594761	20	2.4	21	84	15	61	36	0	2	62	1.07
51627720--51627750	14	2.2	14	100	0	62	25	6	22	45	1.76
51632601--51632628	13	2.2	13	100	0	56	39	7	21	32	1.80
51634309--51634506	98	2.0	98	96	0	360	43	15	7	33	1.74
51636497--51636525	13	2.1	14	93	6	51	55	10	0	34	1.34
51638327--51638504	27	6.6	27	77	6	137	30	28	15	25	1.96
51638327--51638504	54	3.3	54	78	7	164	30	28	15	25	1.96
51644792--51645188	16	24.8	16	66	21	127	36	2	15	45	1.61
51644784--51645201	9	45.7	9	66	17	123	36	2	15	45	1.60
51644803--51645106	46	6.7	46	78	15	328	35	2	15	46	1.61
51644867--51645044	82	2.2	81	94	1	311	37	2	14	45	1.60
51644802--51645192	179	2.2	174	87	7	551	36	2	14	46	1.59
51645030--51645188	80	2.0	78	91	2	255	36	2	15	45	1.60
51644915--51645086	31	5.5	30	72	17	102	37	3	14	44	1.62
51645221--51645254	17	2.0	17	100	0	68	35	5	5	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51646698--51646726	14	2.1	14	100	0	58	31	13	0	55	1.39
51647692--51647768	27	2.8	26	69	7	64	38	22	7	31	1.82
51647760--51647921	27	6.0	27	88	0	207	35	17	21	25	1.95
51647698--51647902	54	3.8	53	80	7	159	37	19	17	26	1.93
51648245--51648311	27	2.5	27	82	2	82	23	22	26	26	2.00
51648310--51648375	32	2.1	32	97	0	123	28	13	15	42	1.85
51648466--51648528	22	2.9	22	79	13	76	15	23	25	34	1.95
51648595--51648674	27	3.0	26	87	5	106	17	23	21	37	1.94
51648793--51648897	6	16.8	6	70	18	72	20	19	14	46	1.83
51648796--51648857	25	2.5	25	89	0	88	20	20	14	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259