genome.fa.s9.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  115  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37363794--37363851	28	2.0	28	87	9	82	20	22	41	15	1.90
37365944--37366150	53	3.8	54	79	1	227	20	23	17	38	1.93
37368249--37368283	19	1.9	19	88	11	56	45	5	5	42	1.51
37368278--37368352	38	2.0	38	97	0	141	54	4	4	37	1.38
37369221--37369271	13	3.9	13	78	0	57	35	17	7	39	1.79
37369208--37369273	26	2.5	26	80	9	89	37	19	6	36	1.77
37370200--37370233	2	17.0	2	87	0	50	47	0	50	2	1.16
37370444--37370482	3	13.0	3	88	0	60	69	0	28	2	1.02
37382015--37382050	19	1.9	18	88	5	54	41	0	0	58	0.98
37382036--37382078	22	2.0	20	82	8	50	55	4	0	39	1.20
37382071--37382129	26	2.2	27	79	11	68	49	1	1	47	1.21
37382534--37382575	22	1.9	22	90	9	68	52	7	0	40	1.29
37393664--37393712	20	2.5	20	75	0	62	32	14	28	24	1.94
37397591--37397635	24	1.9	23	86	13	65	48	4	17	28	1.66
37404593--37404648	28	2.0	28	100	0	112	42	14	0	42	1.45
37407629--37407739	43	2.6	44	82	2	136	34	23	15	27	1.94
37408982--37409356	182	2.1	182	85	4	506	23	21	29	25	1.99
37412040--37412211	46	3.7	46	79	13	208	27	28	22	21	1.99
37412045--37412215	93	1.8	93	94	0	306	27	29	22	21	1.99
37412937--37412962	12	2.2	12	100	0	52	53	30	0	15	1.42
37421634--37421684	18	2.8	19	76	8	61	37	17	21	23	1.94
37422028--37422142	27	4.2	27	82	2	113	17	16	21	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37422052--37422142	27	3.3	27	85	1	128	15	16	24	43	1.86
37422135--37422286	27	5.6	27	90	0	223	37	15	14	32	1.88
37424367--37424427	26	2.3	26	86	8	79	36	29	8	26	1.85
37424533--37424648	28	4.2	28	86	2	155	19	21	21	37	1.95
37432153--37432214	26	2.3	27	83	10	83	37	29	8	25	1.85
37432322--37432429	28	3.9	28	79	6	112	24	19	21	35	1.96
37435497--37435749	129	2.0	130	89	2	393	35	18	17	27	1.94
37438551--37438771	40	5.6	41	81	9	246	25	23	26	24	2.00
37446627--37446795	40	4.2	40	84	6	225	24	23	26	25	2.00
37449157--37449235	25	3.3	25	69	16	85	32	29	3	34	1.75
37449108--37449511	47	8.6	47	92	1	639	29	29	7	33	1.85
37449108--37449511	143	2.9	140	91	1	646	29	29	7	33	1.85
37452540--37452849	40	7.8	40	91	1	471	26	28	21	23	1.99
37452540--37452849	118	2.6	119	90	1	469	26	28	21	23	1.99
37454275--37454632	47	7.6	47	94	1	590	29	30	8	32	1.87
37454325--37454403	25	3.3	25	64	16	67	31	29	6	32	1.82
37485045--37485082	18	2.1	18	95	0	67	42	10	13	34	1.78
37501354--37501432	37	2.1	37	86	4	106	25	29	18	26	1.98
37501551--37502132	47	12.4	47	94	0	986	29	29	8	31	1.88
37520398--37520561	86	1.9	85	83	6	215	32	23	17	26	1.97
37521877--37521936	32	1.9	31	83	6	77	20	23	33	23	1.97
37523321--37523428	54	2.0	54	100	0	216	42	22	11	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37523551--37523712	32	5.0	33	87	4	188	33	20	12	33	1.90
37523705--37523803	29	3.4	29	88	2	153	26	31	8	34	1.85
37528283--37528316	16	2.1	17	88	5	52	8	14	2	73	1.19
37537752--37537845	40	2.3	40	79	0	116	27	14	26	30	1.95
37538769--37538794	13	2.0	13	100	0	52	30	0	7	61	1.24
37540162--37540367	40	5.2	40	92	1	326	23	21	27	28	1.99
37544709--37544744	18	2.0	18	100	0	72	44	5	22	27	1.75
37551041--37551074	16	2.2	15	89	5	50	55	0	0	44	0.99
37551140--37551198	30	2.0	30	83	6	75	49	11	5	33	1.62
37564419--37564511	42	2.2	43	81	9	118	29	25	16	29	1.96
37567277--37567307	16	1.9	16	93	0	53	35	22	0	41	1.54
37567274--37567313	20	2.0	20	85	0	53	37	22	0	40	1.54
37567497--37567751	55	4.8	54	79	7	247	21	26	17	34	1.95
37568087--37568145	30	2.0	30	86	0	82	28	27	3	40	1.72
37574965--37574995	16	1.9	16	93	0	53	35	22	0	41	1.54
37575243--37575428	55	3.4	53	82	7	223	22	25	18	33	1.96
37581766--37581950	67	2.9	64	76	10	180	30	17	29	22	1.97
37584812--37584936	42	2.9	42	84	9	148	36	22	15	26	1.93
37584812--37584936	43	2.9	42	83	4	153	36	22	15	26	1.93
37588560--37588676	42	2.8	42	78	8	139	29	23	15	31	1.95
37588844--37588885	20	2.1	20	95	0	75	40	11	4	42	1.63
37593573--37593620	11	4.4	11	79	10	53	64	2	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37598955--37598993	19	2.1	19	86	13	55	71	2	25	0	0.98
37606279--37606501	40	5.6	40	81	6	186	25	20	26	27	1.99
37606279--37606536	119	2.2	120	80	4	272	26	20	27	26	1.99
37606354--37606536	79	2.3	80	79	3	192	26	20	26	26	1.99
37614187--37614409	40	5.6	40	83	6	213	24	20	27	26	1.99
37614187--37614411	80	2.8	79	82	7	242	24	20	28	27	1.99
37614262--37614443	79	2.3	80	80	2	208	25	20	28	25	1.99
37614187--37614443	119	2.2	120	80	4	272	25	20	28	26	1.99
37616386--37616466	32	2.5	32	83	0	108	22	40	18	18	1.91
37618311--37618338	4	7.0	4	100	0	56	75	0	25	0	0.81
37620965--37621248	100	2.8	100	84	4	333	26	19	26	28	1.99
37620965--37621253	49	5.8	49	82	4	321	26	19	26	28	1.99
37630570--37630610	20	2.0	22	85	9	59	31	2	7	58	1.38
37630979--37631092	30	3.4	34	77	11	92	28	1	12	57	1.44
37631022--37631084	30	2.1	30	93	0	108	25	0	15	58	1.37
37631206--37631236	11	2.8	11	90	0	53	67	0	0	32	0.91
37631206--37631240	11	3.1	11	91	4	52	65	0	0	34	0.93
37643586--37643727	60	2.4	60	91	0	230	37	21	12	28	1.90
37656466--37656607	60	2.4	60	92	0	239	37	22	12	27	1.90
37659025--37659379	71	5.1	71	62	20	192	47	5	7	39	1.56
37658958--37659308	67	5.1	66	62	20	148	45	5	7	41	1.55
37658929--37659491	138	4.1	138	91	1	880	46	5	7	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37663347--37663558	40	5.3	40	77	2	230	25	20	26	27	1.99
37663351--37663567	80	2.7	79	88	3	301	25	21	26	26	1.99
37665968--37666061	25	3.8	25	71	5	73	28	19	20	31	1.97
37666954--37667058	45	2.3	45	90	3	156	28	13	20	38	1.90
37674735--37674879	42	3.4	42	74	13	118	24	21	24	30	1.99
37674727--37674851	42	2.9	41	75	13	119	23	21	24	30	1.99
37678526--37678613	42	2.1	42	95	0	158	21	15	29	32	1.95
37678546--37678613	22	3.2	22	65	23	63	19	17	30	32	1.95
37684199--37684258	27	2.3	27	85	2	77	21	23	20	35	1.96
37690877--37690906	15	2.1	15	93	6	53	30	6	26	36	1.82
37691700--37691816	43	2.7	43	86	1	146	28	21	27	23	1.99
37696801--37697103	40	7.6	40	89	2	396	27	28	20	24	1.99
37719849--37720003	38	4.0	38	83	6	179	23	22	28	25	1.99
37722625--37722704	41	2.0	41	87	9	119	15	40	25	20	1.90
37723619--37723822	46	4.4	47	77	10	163	24	29	18	27	1.98
37733974--37734129	42	3.7	42	82	1	195	32	24	14	29	1.94
37735823--37735987	42	4.0	42	83	0	172	36	23	16	23	1.94
37735837--37735996	83	1.9	83	81	2	194	36	22	15	25	1.93
37741131--37741196	32	2.1	32	100	0	132	37	12	3	46	1.56
37741567--37741631	34	1.9	34	84	6	87	26	21	24	27	1.99
37750605--37750645	14	3.0	14	80	16	50	56	2	4	36	1.34
37751905--37751943	14	3.0	13	85	10	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37764471--37764560	27	3.3	28	80	6	96	40	15	10	34	1.81
37764495--37764569	27	2.8	27	83	4	80	40	18	10	30	1.85
37764471--37764577	54	2.0	54	81	3	126	38	18	10	32	1.85
37764566--37764749	27	6.9	27	88	3	237	27	22	9	40	1.85
37764740--37764979	27	8.8	27	77	3	194	37	19	10	32	1.85
37764600--37764883	54	5.3	54	82	2	185	33	20	9	36	1.84
37764599--37764775	81	2.2	80	81	1	192	29	19	9	41	1.82
37765019--37765089	27	2.6	27	88	4	108	32	25	23	18	1.97
37765014--37765101	27	3.3	27	80	10	101	37	21	21	19	1.94
37766091--37766182	42	2.2	42	92	0	148	29	14	21	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259