genome.fa.s9.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  136  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44282152--44282287	40	3.5	40	81	7	102	26	20	27	25	1.99
44282123--44282287	79	2.1	79	80	8	176	26	20	27	26	1.99
44286924--44286974	24	2.2	24	89	3	77	37	3	7	50	1.50
44286940--44286986	24	2.0	24	83	8	60	40	6	10	42	1.65
44291203--44291568	47	7.8	45	73	13	226	23	29	20	27	1.99
44291202--44291567	94	3.9	95	79	8	385	22	29	20	27	1.98
44292048--44292085	20	2.0	20	89	5	60	34	18	0	47	1.49
44292844--44292871	13	2.2	13	100	0	56	50	28	14	7	1.69
44293956--44294012	24	2.4	24	90	0	87	40	5	7	47	1.53
44297031--44297085	25	2.2	25	90	3	85	58	0	3	38	1.16
44297032--44297098	25	2.8	25	84	8	68	62	0	2	34	1.10
44297800--44297876	24	3.2	23	70	17	59	48	1	5	45	1.33
44300002--44300034	17	1.9	17	93	0	57	69	21	0	9	1.15
44301016--44301071	29	1.9	29	85	0	76	19	14	7	58	1.58
44301206--44301276	28	2.5	29	80	11	76	29	2	0	67	1.05
44301234--44301272	9	4.2	9	80	6	51	33	0	0	66	0.92
44301341--44301476	10	12.8	10	75	20	93	32	1	0	66	1.01
44301236--44301460	78	2.9	76	80	11	208	35	1	0	62	1.12
44301312--44301487	48	3.5	49	75	17	159	32	1	1	64	1.08
44301311--44301476	55	3.0	55	81	13	202	33	1	0	65	1.05
44315671--44315842	40	4.3	40	88	2	222	25	27	21	25	1.99
44315673--44315895	40	5.6	39	83	5	216	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44315671--44315895	80	2.8	79	80	7	240	25	27	21	25	1.99
44315827--44315904	40	1.9	41	82	10	97	26	28	20	24	1.99
44317642--44317787	46	3.1	46	85	5	186	27	29	8	34	1.86
44317761--44318114	94	3.7	94	89	1	474	25	30	12	31	1.93
44317761--44318143	141	2.7	141	87	1	559	26	30	11	32	1.92
44317898--44318019	22	5.3	22	63	18	68	25	32	13	27	1.94
44317761--44318070	47	6.6	47	93	0	494	25	31	13	30	1.93
44321402--44321838	40	10.9	40	93	0	698	25	28	22	22	1.99
44322985--44323095	37	3.0	37	93	0	177	29	32	16	21	1.95
44322985--44323123	37	3.8	37	86	1	136	28	30	16	24	1.96
44322985--44323123	74	1.9	74	83	0	179	28	30	16	24	1.96
44323269--44323414	46	3.1	46	80	5	159	27	28	7	36	1.84
44323393--44323723	47	7.0	47	87	2	419	26	29	12	31	1.93
44325966--44326433	45	10.5	45	66	15	233	30	15	27	26	1.96
44325954--44326433	90	5.4	90	87	2	650	30	15	27	27	1.96
44327776--44327832	29	2.0	29	92	0	96	31	0	1	66	1.02
44327866--44328003	23	6.3	23	75	18	93	33	1	0	64	1.08
44327871--44328003	5	26.6	5	72	24	95	33	1	0	64	1.08
44327865--44328003	35	4.0	35	81	10	153	33	1	0	64	1.07
44327865--44328001	7	19.1	7	71	23	99	32	1	0	64	1.07
44328313--44328355	17	2.6	17	81	3	52	20	2	9	67	1.30
44328378--44328426	18	2.6	19	75	12	57	22	0	10	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44344039--44344315	40	6.9	40	93	0	464	24	28	20	26	1.99
44348671--44348702	14	2.2	15	94	5	57	78	0	3	18	0.89
44353086--44353117	14	2.2	15	94	5	57	78	0	3	18	0.89
44358268--44358312	21	2.0	24	83	12	60	37	8	0	53	1.32
44361929--44361971	18	2.4	18	81	14	61	46	4	9	39	1.57
44362439--44362564	28	4.5	28	95	1	209	26	13	28	31	1.94
44370082--44370124	18	2.4	18	81	14	61	46	4	9	39	1.57
44370592--44370717	28	4.5	28	94	1	200	26	12	28	32	1.93
44373774--44373856	43	1.9	43	82	4	105	24	20	2	53	1.58
44385900--44385982	30	2.8	30	92	0	130	27	19	24	28	1.98
44385951--44386054	36	2.9	36	88	0	127	30	13	24	31	1.93
44390589--44390615	13	2.1	13	100	0	54	29	22	14	33	1.94
44394711--44394753	23	1.9	22	85	4	59	27	4	6	60	1.43
44398396--44398440	19	2.3	20	85	7	58	26	17	6	48	1.72
44406596--44406886	43	6.6	43	71	13	180	30	17	23	28	1.97
44406596--44406891	84	3.4	83	75	14	306	31	17	22	28	1.97
44406680--44406854	93	1.8	95	81	7	221	32	18	22	26	1.97
44406591--44406936	181	1.9	181	88	1	523	32	18	21	26	1.97
44406861--44407001	44	3.2	44	76	3	131	34	21	17	26	1.96
44409056--44409098	23	1.9	22	85	4	59	27	4	6	60	1.43
44415260--44415317	21	2.8	20	84	5	80	17	20	43	18	1.89
44420268--44420304	19	2.0	19	89	5	58	16	35	37	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44422547--44422669	46	2.7	46	87	2	167	31	19	26	21	1.97
44438060--44438209	43	3.5	43	80	5	169	28	16	22	33	1.95
44438063--44438225	86	1.9	85	82	3	202	28	15	23	32	1.95
44457444--44457614	93	1.8	93	88	2	263	28	27	21	23	1.99
44457436--44457611	46	3.8	46	72	14	164	28	27	20	23	1.99
44458029--44458088	30	2.0	30	90	0	93	30	25	8	36	1.85
44460384--44460421	19	2.0	19	85	10	51	13	21	44	21	1.85
44460674--44460828	27	5.8	27	78	7	120	39	18	10	31	1.85
44460646--44460827	54	3.4	52	77	11	172	39	18	11	31	1.86
44460780--44460840	27	2.3	27	91	0	95	42	16	13	27	1.85
44463170--44463251	28	2.9	28	88	0	83	28	15	31	24	1.96
44463186--44463263	28	2.8	27	84	7	102	26	16	33	23	1.96
44465885--44466146	39	6.6	39	85	6	284	25	26	21	26	1.99
44465885--44466146	118	2.2	119	81	12	301	25	26	21	26	1.99
44469831--44469865	17	2.1	17	94	0	61	37	0	25	37	1.57
44476377--44476609	49	4.7	50	80	2	272	26	18	26	28	1.98
44476380--44476609	100	2.3	98	84	2	298	26	18	25	29	1.98
44476380--44476639	101	2.6	101	80	6	296	26	18	26	28	1.98
44478929--44478975	25	1.9	24	86	4	67	19	0	23	57	1.41
44480253--44480318	28	2.4	28	86	0	87	28	24	24	22	1.99
44481363--44481434	37	1.9	37	100	0	144	36	38	11	13	1.81
44486254--44486311	30	1.9	31	85	3	82	39	5	24	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44486735--44486860	46	2.7	46	92	2	200	22	21	26	30	1.99
44492681--44492737	29	1.9	30	85	7	80	40	5	24	29	1.77
44493159--44493331	46	3.7	46	76	14	194	20	20	27	30	1.98
44493156--44493326	93	1.8	93	92	2	290	20	21	28	29	1.98
44494642--44494763	41	2.9	43	86	4	167	31	27	16	24	1.96
44494643--44494776	43	3.2	42	84	6	164	29	26	17	26	1.98
44507775--44507821	23	2.0	23	95	0	85	34	6	12	46	1.67
44526398--44526486	44	2.0	44	93	0	151	33	33	17	14	1.91
44541281--44541458	27	6.6	27	81	3	187	26	15	28	28	1.96
44541281--44541458	54	3.3	55	81	5	209	26	15	28	28	1.96
44541282--44541437	82	1.9	81	85	3	215	26	16	28	28	1.97
44541278--44541458	82	2.2	81	81	2	211	27	16	28	28	1.97
44552431--44552684	127	2.0	127	94	0	445	41	22	9	26	1.84
44564517--44564691	68	2.6	67	79	11	171	33	16	28	21	1.95
44581849--44581890	16	2.5	17	92	7	77	16	45	33	4	1.69
44586807--44587029	39	5.7	40	85	8	266	25	22	27	24	2.00
44586807--44587029	79	2.8	81	84	9	282	25	22	27	24	2.00
44586807--44587062	79	3.3	79	81	10	208	26	21	27	24	1.99
44594819--44594988	39	4.3	39	91	4	238	25	22	27	24	2.00
44594770--44594988	78	2.8	79	82	11	240	26	21	27	24	1.99
44594770--44594988	39	5.6	39	83	10	197	26	21	27	24	1.99
44594819--44595021	79	2.6	79	81	10	206	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44599098--44599157	27	2.2	28	85	5	79	36	20	26	16	1.93
44612886--44612990	26	4.0	26	81	6	104	38	20	11	30	1.87
44612889--44612990	53	1.9	53	82	4	125	38	19	10	31	1.86
44613293--44613338	22	2.1	22	88	8	67	15	19	19	45	1.85
44613404--44613443	21	1.9	21	100	0	80	7	5	47	40	1.54
44624518--44624550	14	2.4	14	90	5	50	15	3	3	78	0.99
44631089--44631131	6	7.3	6	89	10	63	65	0	2	32	1.06
44636556--44636774	47	4.7	47	90	2	368	32	10	29	27	1.89
44638584--44638766	40	4.6	39	78	10	167	25	21	27	25	2.00
44638638--44638789	79	1.9	79	80	7	175	27	19	26	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259