genome.fa.s9.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  138  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45107069--45107210	39	3.6	39	94	0	248	20	21	28	28	1.98
45111626--45111679	25	2.2	25	96	0	99	31	12	27	27	1.93
45112265--45112303	16	2.6	16	92	8	64	46	0	15	38	1.46
45112731--45112761	16	1.9	16	100	0	62	32	22	6	38	1.80
45114511--45114573	28	2.2	28	91	0	99	31	30	6	31	1.83
45129756--45129928	46	3.7	46	79	10	199	22	20	27	29	1.98
45129753--45129923	93	1.8	93	92	0	288	22	20	28	28	1.98
45130153--45130190	19	2.0	20	85	15	53	36	0	23	39	1.55
45133173--45133319	42	3.3	42	86	8	188	28	27	14	29	1.96
45133226--45133408	49	3.8	49	81	10	191	31	26	13	28	1.94
45133200--45133408	95	2.3	94	81	8	225	30	26	14	28	1.95
45133431--45133548	31	3.8	31	84	4	157	22	27	19	29	1.98
45136720--45136845	44	3.0	42	81	9	139	22	15	28	34	1.94
45140767--45140821	18	3.1	18	89	0	83	47	14	18	20	1.83
45141170--45141242	27	2.7	27	86	0	101	36	19	16	27	1.93
45149951--45150165	40	5.4	40	91	2	328	25	29	22	22	1.99
45158435--45158651	79	2.8	80	90	4	327	25	27	23	23	2.00
45158435--45158651	40	5.5	40	91	3	327	25	27	23	23	2.00
45175556--45175617	21	2.9	21	85	2	79	32	3	30	33	1.74
45181278--45181404	43	2.9	43	74	11	123	26	17	24	31	1.97
45185995--45186119	6	20.3	6	72	19	98	48	15	16	19	1.81
45186009--45186119	31	3.6	31	91	2	161	48	15	17	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45186521--45187124	27	22.4	27	88	2	820	24	22	19	32	1.97
45189141--45189234	6	15.3	6	72	16	77	48	14	17	19	1.81
45189155--45189234	31	2.6	31	91	0	124	48	15	17	18	1.81
45189636--45190019	27	14.3	27	88	2	531	24	21	20	33	1.97
45190020--45190329	27	11.5	27	90	0	467	24	22	20	32	1.98
45189960--45190086	67	1.9	67	93	0	218	25	20	20	33	1.97
45189722--45190898	310	3.8	310	92	2	1771	24	22	20	32	1.98
45190330--45190666	27	12.5	27	90	0	503	23	21	21	33	1.97
45190263--45190396	67	2.0	67	91	2	216	24	20	19	35	1.95
45190338--45190898	27	21.4	24	83	6	185	24	22	20	32	1.98
45190674--45190898	27	8.4	27	88	1	317	24	23	20	32	1.98
45190600--45190733	67	2.0	67	91	0	214	25	20	19	35	1.96
45190716--45190919	107	1.9	108	87	5	288	26	20	22	31	1.98
45190879--45190976	27	3.6	27	76	5	99	28	10	24	36	1.88
45192215--45192269	24	2.2	24	87	6	74	41	3	41	12	1.60
45196974--45197022	24	2.0	24	92	0	80	32	4	36	26	1.75
45201258--45201321	24	2.7	24	71	7	60	7	31	1	59	1.35
45201300--45201388	18	4.7	19	80	9	94	5	23	2	68	1.22
45201320--45201371	24	2.1	25	85	3	70	7	21	1	69	1.24
45201302--45201371	6	11.5	6	75	3	59	5	22	1	70	1.17
45203850--45203886	10	3.7	10	96	0	65	43	29	16	10	1.82
45207442--45207494	26	2.0	26	88	0	79	20	18	20	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45211413--45211441	14	2.0	15	93	6	51	27	0	20	51	1.47
45215043--45215219	27	6.5	27	79	3	158	25	15	29	28	1.96
45215046--45215198	82	1.9	81	84	4	209	26	15	30	28	1.96
45219572--45219610	20	1.9	21	89	5	62	35	15	0	48	1.45
45219782--45219934	43	3.6	43	75	11	154	27	27	18	26	1.98
45223841--45223867	13	2.1	13	100	0	54	37	22	0	40	1.54
45225515--45225566	27	1.9	27	92	0	86	28	23	9	38	1.86
45225515--45225573	27	2.2	27	87	0	82	28	20	10	40	1.85
45225578--45225771	27	7.2	27	80	5	205	36	17	19	27	1.94
45225971--45226053	27	3.1	26	84	5	85	20	20	21	37	1.95
45226365--45226437	27	2.7	25	83	10	83	17	24	21	35	1.95
45226555--45226740	6	30.8	6	72	17	136	20	16	13	48	1.80
45226555--45226740	30	6.4	30	81	10	206	20	16	13	48	1.80
45226555--45226761	30	7.1	30	80	12	198	20	16	14	48	1.80
45228749--45229309	27	22.2	27	78	14	492	27	21	10	40	1.85
45228752--45229293	127	4.3	129	79	14	510	28	20	9	40	1.85
45229145--45229239	45	2.1	46	84	9	124	28	23	9	38	1.86
45229314--45229478	27	6.2	27	81	4	174	38	17	17	26	1.92
45229314--45229507	54	3.6	54	85	2	216	37	18	18	26	1.93
45229322--45229505	81	2.3	81	82	3	203	37	17	19	26	1.93
45229332--45229505	27	6.5	27	82	5	183	36	16	20	27	1.93
45229706--45229788	27	3.1	26	84	5	85	20	20	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45230097--45230170	27	2.8	25	84	10	85	17	24	21	36	1.95
45230288--45230473	6	30.8	6	72	17	136	20	16	13	48	1.80
45230288--45230473	85	2.2	84	92	0	309	20	16	13	48	1.80
45232485--45233077	27	22.2	27	82	7	665	27	21	10	40	1.85
45232485--45233097	80	7.7	81	78	8	308	27	21	10	40	1.86
45233082--45233192	27	4.2	27	83	3	136	40	18	15	26	1.89
45233100--45233222	27	4.6	27	79	1	113	37	17	18	26	1.93
45233420--45233502	27	3.1	26	84	5	85	20	20	21	37	1.95
45233810--45233883	27	2.8	25	84	10	85	17	24	21	36	1.95
45234001--45234186	6	30.8	6	73	17	145	20	17	13	48	1.81
45234001--45234186	30	6.4	30	81	10	215	20	17	13	48	1.81
45236192--45236778	27	22.2	27	82	7	686	26	21	10	41	1.85
45236200--45236773	159	3.6	160	88	5	839	26	21	10	41	1.85
45236200--45236788	264	2.2	265	87	4	861	26	21	10	41	1.85
45236192--45236798	79	7.7	81	78	9	293	26	21	10	41	1.85
45236783--45236958	27	6.7	26	81	6	183	36	18	18	26	1.94
45236790--45236975	53	3.5	54	86	3	227	36	18	19	25	1.95
45237174--45237256	27	3.1	26	86	5	103	19	20	22	37	1.94
45237344--45237402	22	2.7	22	81	0	64	20	25	22	32	1.98
45237567--45237640	27	2.8	27	85	6	89	17	24	21	36	1.95
45237756--45237938	6	30.8	6	73	19	145	19	16	14	49	1.80
45237756--45237938	30	6.4	30	82	12	215	19	16	14	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45239936--45240525	27	22.2	27	82	6	677	26	21	10	41	1.85
45239939--45240537	106	5.6	106	84	8	736	26	21	10	41	1.85
45240530--45240640	27	4.2	27	83	3	136	40	18	15	26	1.89
45240548--45240670	27	4.6	27	79	1	113	37	17	18	26	1.93
45240867--45240949	27	3.1	26	84	5	85	20	20	21	37	1.95
45241255--45241328	27	2.8	25	84	10	85	17	24	21	36	1.95
45241445--45241627	6	30.8	6	73	18	145	19	17	13	49	1.80
45241445--45241627	30	6.4	30	81	13	215	19	17	13	49	1.80
45243627--45244218	27	22.2	27	83	5	686	26	21	10	41	1.85
45243635--45244213	161	3.6	162	89	4	863	26	21	10	41	1.85
45244223--45244416	27	7.3	27	82	1	203	36	18	19	26	1.94
45244241--45244417	54	3.3	54	86	2	232	35	17	20	26	1.95
45244615--45244697	27	3.1	26	82	5	94	20	19	22	37	1.94
45244785--45244843	22	2.7	22	81	0	64	20	25	22	32	1.98
45245007--45245079	27	2.8	27	85	4	87	17	23	21	36	1.94
45245196--45245382	6	30.8	6	74	16	163	20	17	13	48	1.81
45245196--45245382	85	2.2	85	95	0	338	20	17	13	48	1.81
45245196--45245382	30	6.4	30	83	11	244	20	17	13	48	1.81
45248937--45248982	19	2.4	19	96	0	83	32	23	32	10	1.90
45251656--45252055	3	134.3	3	66	13	116	64	2	6	27	1.31
45251703--45251790	16	5.4	16	76	5	70	65	0	4	29	1.12
45251972--45252021	22	2.3	21	86	6	73	68	2	8	22	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45252031--45252082	15	3.6	14	80	14	52	63	1	0	34	1.06
45253713--45253914	45	4.6	44	67	13	121	26	23	19	30	1.98
45253690--45253992	129	2.3	132	88	2	450	26	24	18	31	1.98
45253688--45253878	44	4.4	44	69	16	137	27	20	19	32	1.97
45260497--45260554	30	1.9	30	86	6	82	22	31	27	18	1.97
45264086--45264139	27	2.0	27	85	0	72	38	7	14	38	1.75
45264389--45264629	49	4.8	50	80	4	265	26	17	25	30	1.98
45264393--45264628	101	2.4	99	84	3	287	25	17	25	30	1.97
45270008--45270263	80	3.2	80	88	3	367	23	21	28	26	1.99
45270008--45270237	40	5.8	40	92	1	356	22	21	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259