Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  15  of  259  ( 31025 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4325062--4325119
21
2.7
22
87
10
77
31
22
12
34
1.91
4342910--4342957
24
2.0
24
95
0
87
41
10
16
31
1.82
4346922--4346973
25
2.1
25
92
0
86
48
5
13
32
1.66
4350425--4350461
18
2.1
18
100
0
74
16
0
37
45
1.47
4350623--4350651
14
2.1
14
93
6
51
27
6
37
27
1.82
4359416--4359449
13
2.6
13
100
0
68
14
17
38
29
1.90
4363393--4363483
46
2.0
46
95
0
164
37
15
16
30
1.90
4367285--4367321
19
2.0
18
94
5
65
16
10
0
72
1.10
4368101--4368297
102
1.9
102
88
5
299
30
14
25
28
1.95
4370301--4370339
9
4.6
8
81
12
51
82
0
15
2
0.79
4370301--4370339
17
2.3
17
86
8
53
82
0
15
2
0.79
4377497--4377549
27
2.0
27
85
7
72
28
3
3
64
1.28
4377493--4377549
30
1.9
30
85
7
80
28
3
5
63
1.33
4377594--4377639
22
2.1
21
84
4
56
32
8
0
58
1.28
4377743--4377873
3
44.7
3
67
15
60
33
6
1
58
1.34
4377756--4377797
14
2.9
15
82
6
52
30
9
0
59
1.29
4377786--4377873
38
2.5
35
81
7
97
34
4
2
59
1.30
4377786--4377870
35
2.4
34
78
16
93
34
4
2
58
1.31
4377987--4378066
24
3.3
24
74
19
76
32
3
2
61
1.27
4378004--4378065
23
2.7
23
82
7
63
32
3
1
62
1.20
4378087--4378127
21
2.0
20
85
4
55
34
2
7
56
1.40
4378177--4378227
22
2.3
21
80
9
57
37
3
3
54
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4378177--4378242
24
2.8
23
78
10
64
37
4
4
53
1.42
4378316--4378389
25
3.0
25
68
18
64
35
8
5
51
1.55
4378760--4378790
8
3.8
8
95
4
53
16
0
0
83
0.64
4387130--4387174
25
1.9
24
82
13
58
33
8
15
42
1.78
4394236--4394307
18
3.7
18
69
25
56
47
2
25
25
1.65
4394222--4394301
42
1.9
42
86
0
115
47
3
22
26
1.68
4394474--4394707
123
1.9
123
98
0
450
36
9
14
40
1.78
4395301--4395408
42
2.6
43
79
8
107
26
19
28
25
1.99
4399276--4399313
20
1.9
20
88
0
58
73
2
5
18
1.14
4400152--4400178
6
4.5
6
100
0
54
37
0
0
62
0.95
4401119--4401275
45
3.5
45
84
1
217
22
21
17
39
1.92
4401253--4401369
44
2.6
45
86
2
164
19
14
17
48
1.81
4401113--4401275
89
1.8
89
85
0
227
22
20
17
39
1.92
4406508--4406580
34
2.1
34
80
9
78
38
4
13
43
1.63
4407516--4407640
62
2.0
62
100
0
250
25
28
19
26
1.98
4416685--4416719
3
11.7
3
93
0
61
28
0
2
68
1.04
4422393--4422437
19
2.3
20
88
3
65
6
26
4
62
1.39
4424799--4424893
12
8.1
13
67
25
52
34
24
2
38
1.67
4424816--4424868
18
3.0
17
86
5
70
33
22
1
41
1.65
4424810--4424893
34
2.5
34
83
11
102
33
23
2
40
1.68
4424810--4424891
17
4.8
17
81
10
87
34
23
2
40
1.68
4425022--4425054
17
2.1
16
88
11
50
27
6
0
66
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4430385--4430431
20
2.4
20
82
3
60
65
0
25
8
1.20
4433091--4433135
22
2.1
22
91
4
74
13
13
20
53
1.72
4436706--4436773
31
2.2
31
86
5
93
4
10
2
82
0.92
4436686--4436743
20
2.9
21
79
7
66
3
12
3
81
0.95
4436691--4436807
51
2.3
50
81
10
139
5
11
6
76
1.16
4443887--4443921
16
2.2
16
89
0
52
71
0
14
14
1.15
4444186--4444252
35
1.9
35
93
0
116
28
32
22
16
1.95
4447932--4447967
18
2.0
18
88
0
54
25
25
19
30
1.98
4453557--4453604
25
2.0
25
87
4
71
68
10
0
20
1.18
4454893--4454955
26
2.3
28
86
10
87
15
6
33
44
1.72
4463593--4463639
24
2.0
24
100
0
94
46
4
4
44
1.42
4482915--4483034
51
2.4
52
80
9
142
50
1
5
41
1.36
4484465--4484530
33
2.0
33
100
0
132
45
9
18
27
1.79
4490739--4490769
16
1.9
16
93
0
53
48
6
3
41
1.45
4490997--4491055
23
2.6
23
81
7
68
27
18
20
33
1.96
4500347--4500405
29
2.1
29
87
3
84
54
15
8
22
1.68
4500356--4500419
29
2.2
29
83
2
76
51
18
6
23
1.69
4500644--4500673
8
3.8
8
100
0
60
90
0
0
10
0.47
4507243--4507287
23
2.0
23
82
8
56
37
8
13
40
1.76
4509337--4509380
18
2.3
19
85
14
56
31
6
2
59
1.36
4525230--4525344
46
2.5
46
83
5
137
33
21
19
26
1.97
4525270--4525606
44
8.0
43
70
7
190
30
21
22
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4525270--4525605
172
2.0
168
88
4
496
30
21
22
25
1.99
4525569--4525688
44
2.7
44
85
5
154
30
20
21
26
1.98
4525351--4525626
85
3.2
84
76
7
295
30
22
22
25
1.99
4525444--4525707
129
2.1
128
85
4
354
30
22
21
26
1.99
4525906--4525959
15
3.6
15
100
0
108
48
44
0
7
1.31
4525905--4525958
7
7.3
7
76
12
54
50
44
0
5
1.25
4526912--4526983
28
2.5
29
74
19
71
34
5
5
54
1.47
4554079--4554104
13
2.0
13
100
0
52
46
23
7
23
1.78
4556375--4556418
22
2.0
22
95
0
79
38
18
11
31
1.86
4557285--4557327
21
2.2
20
84
16
54
65
0
0
34
0.93
4558111--4558188
6
12.7
6
79
11
70
66
24
2
6
1.28
4558119--4558194
39
1.9
39
89
5
118
64
23
3
7
1.37
4558113--4558204
45
2.0
45
97
0
175
63
22
4
9
1.43
4558671--4558725
28
2.0
28
92
0
92
41
16
12
29
1.85
4559334--4559374
15
2.8
15
85
3
57
17
2
14
65
1.37
4569343--4569404
25
2.5
25
94
0
106
19
17
25
37
1.94
4571797--4571828
15
2.1
15
100
0
64
53
6
28
12
1.62
4576092--4576164
37
2.0
36
86
5
103
38
4
10
46
1.58
4581583--4581630
21
2.3
20
76
13
53
52
0
6
41
1.27
4581946--4582003
17
3.5
17
79
11
66
63
1
1
32
1.14
4587020--4587061
11
3.9
11
84
6
50
23
45
2
28
1.66
4587594--4587668
18
4.2
18
78
0
78
30
20
13
36
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4591643--4591685
11
4.0
11
84
6
61
20
46
4
27
1.71
4591643--4591684
21
2.0
22
90
4
68
21
47
2
28
1.63
4593697--4593835
43
3.2
43
84
0
170
27
29
18
24
1.98
4594038--4594114
6
12.5
6
72
10
57
71
2
2
23
1.11
4594031--4594072
20
2.1
20
86
8
59
73
4
0
21
1.01
4594031--4594114
19
4.1
19
71
24
64
70
2
2
25
1.11
4598850--4598886
15
2.5
15
86
4
58
43
32
5
18
1.73
4599044--4599077
16
2.1
17
94
5
61
20
0
29
50
1.49
4599147--4599288
41
3.5
41
94
0
257
17
22
26
33
1.96
4635764--4635804
17
2.4
17
84
8
57
51
39
2
7
1.43
4636921--4637001
22
3.7
22
68
14
60
29
9
1
59
1.38
4637175--4637209
18
2.0
17
94
5
61
28
2
5
62
1.32
4637530--4637682
3
50.7
3
67
13
55
28
7
4
59
1.45
4637528--4637586
21
2.9
21
78
12
68
27
10
3
59
1.46
4637523--4637644
65
1.9
65
81
3
147
28
11
4
55
1.53
4637546--4637682
3
46.0
3
68
9
57
27
7
5
59
1.45
4642538--4642761
66
3.4
66
79
6
213
20
24
28
26
1.99
4651639--4651784
43
3.4
43
75
12
147
28
15
24
31
1.95
4660050--4660108
31
2.0
30
83
12
77
32
5
13
49
1.64
4660606--4660685
29
2.7
29
80
5
88
45
12
8
33
1.73
4661217--4661349
70
1.9
67
84
4
176
33
12
11
42
1.79
4662702--4662748
18
2.6
17
90
9
76
8
40
21
29
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4663483--4663531
19
2.5
19
87
12
73
38
6
0
55
1.25
4663673--4663733
22
2.6
24
80
15
65
32
11
1
54
1.46
4667675--4667764
44
2.0
44
89
0
135
37
11
4
46
1.60
4669935--4669999
32
2.0
32
100
0
130
30
6
24
38
1.80
4671480--4671532
26
2.0
26
85
7
72
37
22
15
24
1.92
4685583--4685653
35
2.0
35
97
0
133
26
35
25
12
1.92
4686387--4686492
8
12.5
8
74
15
72
5
10
3
80
1.01
4686401--4686527
21
6.0
20
73
13
85
2
11
6
80
0.98
4686457--4686528
12
5.6
12
80
15
72
0
5
9
84
0.76
4693844--4693914
35
2.0
35
91
0
115
28
33
23
14
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259