genome.fa.s9.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  153  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50168031--50168156	66	1.9	66	82	6	157	38	16	25	19	1.92
50168028--50168171	66	2.2	65	78	8	148	40	17	24	17	1.90
50170151--50170185	9	3.9	9	88	11	54	14	42	34	8	1.76
50174397--50174441	15	3.1	15	96	3	83	28	33	13	24	1.93
50185047--50185308	39	6.6	39	87	5	329	25	22	27	24	2.00
50193202--50193463	39	6.6	39	86	5	320	25	22	27	24	2.00
50196996--50197169	46	3.8	46	75	11	167	22	19	27	31	1.98
50196992--50197164	93	1.9	93	88	2	267	22	19	28	29	1.98
50199264--50199470	63	3.2	64	74	11	179	31	17	28	21	1.97
50199857--50199913	28	2.0	28	100	0	114	35	10	14	40	1.80
50201775--50201814	20	2.0	21	95	5	73	35	12	2	50	1.54
50202312--50202356	23	2.0	23	100	0	90	17	11	40	31	1.85
50229299--50229423	6	20.3	6	67	16	69	47	14	17	20	1.83
50229299--50229400	43	2.4	43	85	3	125	47	14	17	20	1.83
50229320--50229423	25	4.4	25	72	16	96	46	14	18	21	1.84
50229322--50229420	43	2.3	44	87	1	146	45	15	18	21	1.85
50229540--50229646	27	4.0	26	84	8	135	38	22	23	15	1.93
50229540--50229646	53	2.0	53	90	3	171	38	22	23	15	1.93
50229805--50229853	22	2.2	22	89	7	73	26	20	28	24	1.99
50229805--50229864	22	2.7	22	84	5	59	31	21	25	21	1.98
50230258--50230337	27	3.0	27	89	5	110	27	20	18	33	1.96
50234722--50234768	24	2.0	23	83	4	58	51	6	31	10	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50245121--50245220	28	3.6	27	88	8	137	27	15	28	30	1.96
50249323--50249474	40	3.8	40	85	2	180	27	28	19	24	1.99
50257460--50257610	40	3.8	40	90	2	205	25	28	21	23	1.99
50257440--50257611	40	4.3	41	85	3	201	27	27	20	23	1.99
50264447--50264507	29	2.1	28	87	9	86	36	0	0	63	0.94
50264476--50264513	19	2.0	19	94	0	67	34	0	0	65	0.93
50264570--50264632	9	6.2	10	74	17	58	33	1	1	63	1.13
50264566--50264684	14	7.7	15	70	22	61	30	5	0	63	1.21
50268755--50268840	28	3.0	28	88	3	127	30	29	12	27	1.93
50268898--50268932	17	2.1	17	88	0	52	20	37	22	20	1.95
50269050--50269101	25	2.1	25	89	3	79	11	25	11	51	1.71
50273049--50273157	29	3.8	29	79	4	116	28	28	16	26	1.97
50273390--50273438	16	3.1	16	93	0	80	18	18	10	53	1.72
50273374--50273424	24	2.1	24	85	0	66	15	19	11	52	1.73
50279095--50279317	40	5.6	40	86	3	236	24	21	27	26	1.99
50287000--50287224	80	2.8	79	82	4	247	24	20	28	27	1.99
50287053--50287222	40	4.3	41	88	5	224	24	20	28	27	1.99
50290413--50290460	25	1.9	25	84	16	64	62	4	0	33	1.14
50300874--50300914	21	2.0	21	100	0	82	43	9	14	31	1.78
50304208--50304291	14	7.0	12	74	16	52	34	3	1	60	1.21
50306159--50306225	20	3.3	20	89	0	107	32	13	20	32	1.92
50306274--50306443	24	7.0	24	89	4	236	30	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50306631--50306690	31	1.9	31	93	0	102	36	16	21	25	1.94
50309525--50309576	27	1.9	27	92	0	86	28	5	34	30	1.81
50314292--50314338	20	2.3	20	96	0	85	34	10	21	34	1.88
50314387--50314531	25	6.0	24	88	7	188	28	19	22	29	1.98
50320309--50320485	27	6.6	27	85	5	205	29	28	14	27	1.95
50320330--50320484	81	1.9	81	89	5	242	29	28	14	27	1.95
50334146--50334232	44	2.0	43	88	8	131	39	25	12	22	1.90
50349042--50349150	37	2.9	37	95	0	191	26	31	19	22	1.98
50350247--50350325	25	3.3	25	66	16	76	31	29	5	34	1.79
50350197--50350829	96	6.6	96	94	1	1008	29	29	8	33	1.86
50350197--50350829	145	4.4	144	94	2	1053	29	29	8	33	1.86
50350197--50350829	241	2.6	241	96	0	1144	29	29	8	33	1.86
50353347--50353531	48	3.8	48	92	4	309	30	26	7	35	1.83
50353347--50353530	98	1.9	97	93	4	318	30	26	7	35	1.83
50353501--50353694	47	4.1	47	90	0	289	26	29	10	32	1.90
50353594--50353665	22	3.1	22	64	24	58	23	29	13	33	1.93
50353454--50353694	94	2.6	94	84	4	290	27	29	9	33	1.89
50382023--50382071	23	2.1	23	100	0	98	44	16	8	30	1.76
50382030--50382079	23	2.2	23	85	7	66	48	16	10	26	1.77
50382653--50382690	13	3.0	13	92	3	60	39	0	21	39	1.53
50389780--50389839	30	2.0	29	84	9	77	38	6	25	30	1.81
50392569--50392612	22	2.0	22	100	0	88	59	4	9	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50394272--50394390	35	3.4	35	77	4	132	42	18	10	28	1.82
50397016--50397137	22	5.3	22	62	21	61	33	11	29	25	1.91
50396869--50397165	47	6.3	47	92	1	436	31	9	31	27	1.88
50399614--50400134	40	13.1	40	91	0	756	24	22	27	25	2.00
50403474--50403685	47	4.8	46	83	11	271	29	9	33	26	1.89
50403503--50403630	38	3.2	38	76	20	118	32	10	32	25	1.89
50403601--50403706	47	2.3	47	90	3	160	33	8	31	27	1.87
50406264--50406571	40	7.7	40	88	0	420	25	22	27	25	2.00
50409459--50409603	35	4.1	34	76	6	137	26	12	18	42	1.86
50409571--50409667	50	1.9	50	85	0	131	30	9	20	39	1.84
50409571--50409689	50	2.4	50	79	10	127	30	10	20	39	1.85
50413471--50413564	45	2.1	45	95	0	170	44	15	9	29	1.79
50414295--50414333	19	2.1	19	85	0	51	71	7	5	15	1.26
50414754--50414854	28	3.6	27	80	9	105	30	22	25	20	1.98
50414960--50415027	28	2.4	28	95	0	118	32	7	26	33	1.84
50416104--50416140	19	2.0	20	89	10	60	72	0	27	0	0.84
50421750--50421865	57	2.0	57	98	0	223	23	33	14	28	1.94
50429531--50429610	23	3.3	24	78	5	81	35	15	23	26	1.94
50429531--50429625	47	1.9	51	81	12	119	33	15	23	27	1.95
50435345--50435397	20	2.7	20	84	0	70	37	18	9	33	1.83
50435565--50435668	22	4.6	23	75	10	106	41	19	18	21	1.91
50435565--50435621	23	2.5	23	91	2	89	40	21	15	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50450723--50450799	22	3.4	22	78	10	75	32	15	24	27	1.95
50456473--50456525	20	2.7	20	84	0	70	37	18	9	33	1.83
50456693--50456796	22	4.6	23	75	10	106	41	19	18	21	1.91
50456693--50456749	23	2.5	23	91	2	89	40	21	15	22	1.91
50460543--50460577	18	2.1	17	89	10	54	45	2	14	37	1.59
50461711--50461769	31	1.9	31	100	0	118	30	20	23	25	1.98
50461724--50461815	46	2.0	46	86	0	130	28	23	21	26	1.99
50461771--50461839	31	2.2	31	86	0	93	26	21	26	26	2.00
50465141--50465425	137	2.1	136	94	1	466	23	18	25	32	1.97
50470471--50470578	26	4.2	26	92	0	189	31	5	25	37	1.79
50472363--50472650	137	2.1	137	92	1	481	25	19	23	31	1.98
50481511--50481566	27	2.0	28	82	3	69	1	30	3	64	1.21
50481872--50481907	18	2.0	18	94	0	63	33	30	11	25	1.90
50486370--50486457	6	14.3	6	70	17	56	47	11	19	21	1.80
50486391--50486457	25	2.7	25	88	0	98	46	10	20	22	1.81
50486575--50486647	27	2.8	26	83	8	85	36	17	23	21	1.94
50487309--50487381	35	2.1	35	92	0	119	24	16	19	39	1.91
50487344--50487781	27	16.2	27	88	0	570	24	19	18	37	1.94
50487344--50487781	108	4.1	108	92	0	696	24	19	18	37	1.94
50487772--50487905	54	2.5	54	79	2	126	32	5	22	39	1.78
50487828--50488431	107	5.7	106	81	9	538	30	9	20	39	1.84
50487828--50488431	27	22.6	27	80	7	590	30	9	20	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50487828--50488431	53	11.3	54	83	6	590	30	9	20	39	1.84
50492581--50492623	23	2.0	21	90	9	68	44	6	6	41	1.58
50494915--50495047	34	3.9	34	79	7	144	18	22	24	34	1.96
50494918--50495047	69	1.9	69	87	3	190	18	23	24	33	1.96
50499360--50499403	21	2.2	20	83	4	52	34	2	4	59	1.30
50499397--50499448	26	2.0	25	85	11	68	40	3	0	55	1.18
50508946--50508976	16	1.9	16	93	0	53	35	0	16	48	1.46
50511747--50511995	39	6.4	39	91	0	381	30	27	20	21	1.98
50514268--50514315	21	2.3	21	88	0	69	14	29	29	27	1.95
50514279--50514323	21	2.1	21	87	0	63	11	22	33	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259