genome.fa.s9.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  119  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38559185--38559531	50	6.8	49	75	7	289	28	27	17	26	1.98
38559299--38559531	51	4.6	51	79	3	231	29	26	18	26	1.98
38559191--38559538	150	2.3	153	90	3	531	28	27	18	25	1.98
38559356--38559539	101	1.8	99	83	2	242	29	27	17	26	1.97
38561661--38561714	15	3.7	15	75	20	51	61	18	12	7	1.54
38564318--38564414	30	3.2	30	75	5	90	29	16	25	27	1.97
38566343--38566675	50	6.6	51	77	9	274	28	27	17	25	1.98
38566343--38566682	150	2.3	150	93	0	572	28	27	17	25	1.98
38566337--38566683	101	3.5	100	74	9	321	28	27	17	26	1.98
38578683--38578729	11	3.8	12	81	15	60	17	8	2	72	1.19
38578686--38578719	13	2.5	14	95	4	61	14	5	0	79	0.91
38580816--38580852	11	3.3	11	92	3	56	75	8	2	13	1.13
38580816--38580852	12	3.2	12	88	11	51	75	8	2	13	1.13
38581889--38581968	24	3.2	24	69	5	61	66	1	23	8	1.27
38581899--38581998	12	8.6	12	68	18	59	67	1	20	12	1.28
38581952--38582001	18	2.7	18	81	3	64	68	0	18	14	1.22
38581932--38582019	30	3.1	27	80	12	97	69	1	18	11	1.24
38582016--38582078	33	1.9	33	84	12	85	55	6	25	12	1.60
38583862--38583907	20	2.3	20	84	0	56	23	19	17	39	1.92
38583854--38583927	30	2.5	30	84	8	80	22	20	18	37	1.94
38586180--38586227	25	1.9	25	91	0	78	43	8	12	35	1.73
38586256--38586289	11	3.2	11	87	8	52	52	8	8	29	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38586256--38586289	10	3.2	10	91	8	50	52	8	8	29	1.62
38593105--38593144	21	1.9	21	90	10	64	20	25	20	35	1.96
38593103--38593150	11	4.5	11	77	15	55	16	27	18	37	1.92
38593919--38593983	32	2.0	32	90	0	103	41	16	16	24	1.89
38593919--38594003	32	2.8	33	82	12	101	40	17	14	28	1.88
38593932--38594023	32	3.1	29	80	12	73	44	17	10	27	1.82
38595692--38595716	13	1.9	13	100	0	50	36	16	32	16	1.90
38596187--38596273	29	2.9	30	75	3	95	28	13	27	29	1.94
38601188--38601222	18	1.9	18	88	11	54	22	20	0	57	1.41
38602145--38602178	13	2.6	13	90	9	52	11	2	2	82	0.89
38602170--38602209	16	2.5	16	100	0	80	20	10	0	70	1.16
38606631--38606673	20	2.2	20	86	0	59	81	2	11	4	0.93
38615036--38615219	67	2.8	64	79	7	192	23	30	16	28	1.96
38615951--38616011	30	2.0	30	83	0	77	31	24	8	36	1.85
38617204--38617300	30	3.2	30	76	2	97	29	26	14	28	1.95
38618156--38618204	20	2.3	20	82	10	53	32	8	14	44	1.74
38623779--38623949	93	1.8	93	89	2	272	22	19	28	29	1.98
38623784--38623957	46	3.8	46	77	11	194	22	19	29	28	1.98
38628601--38628639	20	1.9	21	84	5	53	38	15	23	23	1.92
38632179--38632284	48	2.2	47	85	9	135	59	1	24	14	1.45
38633954--38634000	20	2.3	20	85	0	67	29	36	12	21	1.91
38642805--38643060	55	4.9	52	75	13	222	36	16	25	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38642813--38643013	108	1.8	110	88	4	309	34	16	25	22	1.95
38643252--38643282	16	1.9	16	93	0	53	41	0	22	35	1.54
38649836--38649870	12	2.8	12	95	4	61	11	11	0	77	1.00
38649835--38649869	13	2.7	13	86	13	54	11	8	0	80	0.92
38660959--38661012	20	2.7	20	70	0	54	33	20	25	20	1.97
38666085--38666181	30	3.2	30	75	2	106	28	15	26	28	1.96
38668362--38668392	12	2.6	12	100	0	62	25	16	12	45	1.83
38668453--38668502	6	8.2	6	81	16	50	2	20	2	76	0.99
38668442--38668512	37	1.9	37	86	11	101	2	18	2	76	1.04
38668438--38668498	16	3.8	16	77	14	63	3	19	1	75	1.03
38671200--38671296	30	3.2	30	75	2	106	28	15	26	28	1.96
38674335--38674395	21	2.9	21	82	4	79	32	18	11	37	1.86
38674343--38674395	11	5.0	11	75	6	56	30	18	13	37	1.89
38674432--38674481	25	2.0	26	88	4	75	26	12	24	38	1.90
38676089--38676118	11	2.7	11	100	0	60	16	10	46	26	1.78
38685737--38685799	33	1.9	33	84	12	85	12	26	6	53	1.62
38685814--38685921	6	17.7	6	68	5	65	7	19	2	70	1.24
38685797--38685912	18	5.7	21	69	18	52	8	19	2	68	1.27
38685796--38685852	14	4.1	14	75	16	57	8	17	1	71	1.19
38685814--38685932	57	2.1	55	81	12	134	8	19	2	69	1.25
38686998--38687069	12	5.6	12	75	16	56	16	6	4	72	1.23
38686956--38687017	28	2.2	28	83	11	74	4	16	4	74	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38690165--38690202	10	3.8	10	83	13	51	21	18	31	28	1.97
38690166--38690203	20	1.9	20	94	0	67	18	18	34	28	1.95
38692838--38692890	11	4.7	11	80	17	56	79	5	1	13	0.99
38692838--38692890	13	4.6	12	81	9	58	79	5	1	13	0.99
38692938--38692994	24	2.3	25	85	11	73	73	3	10	12	1.21
38693845--38693883	15	2.4	15	87	12	51	66	2	20	10	1.33
38695364--38695418	20	2.8	20	82	0	74	25	27	16	30	1.96
38702202--38702264	33	1.9	33	84	12	85	12	25	6	55	1.60
38702261--38702347	27	3.1	27	80	9	97	11	18	1	68	1.25
38702279--38702321	17	2.4	18	84	7	61	13	18	0	67	1.23
38702282--38702347	29	2.4	27	87	10	89	12	18	0	69	1.18
38702282--38702380	12	8.6	12	68	20	59	12	20	1	66	1.29
38702304--38702390	24	3.5	24	71	12	68	10	24	1	64	1.32
38703425--38703469	23	2.0	23	82	8	56	11	11	6	71	1.31
38703369--38703455	15	6.2	13	70	17	57	8	14	4	72	1.24
38708201--38708234	18	1.9	18	88	5	52	52	2	35	8	1.47
38716655--38716877	39	5.7	40	83	8	248	25	21	27	25	1.99
38716655--38716877	79	2.8	80	80	11	253	25	21	27	25	1.99
38716655--38716910	79	3.3	79	80	10	199	26	21	27	25	1.99
38718614--38718665	25	2.1	25	89	3	79	25	19	23	32	1.97
38718713--38718773	21	2.9	21	78	4	70	34	16	11	37	1.85
38720787--38720825	19	2.0	19	90	5	60	23	12	35	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38725205--38725251	20	2.3	20	81	0	58	23	12	34	29	1.92
38726922--38727027	48	2.2	48	85	9	137	14	24	1	59	1.45
38728049--38728086	16	2.5	15	87	12	51	5	15	7	71	1.28
38728079--38728148	13	5.6	12	73	18	54	17	7	1	74	1.11
38728090--38728140	13	3.7	13	78	14	57	21	5	1	70	1.18
38729637--38729683	20	2.3	20	81	0	58	23	12	34	29	1.92
38730862--38730889	10	2.8	10	100	0	56	75	7	0	17	1.03
38736813--38736846	12	2.8	12	83	16	52	50	2	5	41	1.42
38738678--38738743	33	2.0	33	96	0	123	46	15	22	15	1.82
38740208--38740245	10	3.8	10	83	13	51	21	18	31	28	1.97
38740185--38740245	20	3.0	20	83	9	63	27	14	27	29	1.95
38740209--38740246	20	1.9	20	94	0	67	18	18	34	28	1.95
38742720--38742782	21	3.0	21	85	2	81	33	31	3	31	1.74
38746385--38746481	30	3.2	30	73	2	97	29	14	25	29	1.95
38747256--38747309	20	2.7	20	82	0	63	24	20	18	37	1.94
38747256--38747329	30	2.5	30	86	8	98	21	20	18	39	1.93
38747256--38747320	20	3.2	20	71	16	53	23	21	16	38	1.93
38765742--38765998	135	1.9	135	82	1	327	32	18	20	28	1.96
38769852--38769942	29	3.1	28	89	6	121	36	12	19	31	1.89
38769870--38769942	29	2.5	29	95	0	128	34	13	20	31	1.92
38770673--38770732	27	2.2	27	96	0	111	28	10	25	36	1.88
38771327--38771455	46	2.8	44	80	9	132	27	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38772609--38772648	21	1.9	21	100	0	80	10	40	30	20	1.85
38774560--38774650	46	2.0	46	86	0	128	27	31	6	34	1.83
38774667--38774742	22	3.3	22	68	28	68	25	27	10	36	1.89
38774664--38775002	47	7.2	47	91	0	507	25	27	11	34	1.91
38774759--38774929	22	7.4	22	64	24	75	24	27	13	34	1.93
38778924--38778948	12	2.1	12	100	0	50	40	36	8	16	1.77
38790128--38790321	96	2.0	96	82	2	237	14	34	15	35	1.89
38792762--38792901	39	3.5	39	92	2	210	17	23	29	29	1.97
38801417--38801445	7	4.1	7	100	0	58	0	31	13	55	1.39
38804383--38804416	17	1.9	18	88	5	52	26	55	0	17	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259