genome.fa.s9.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  203  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64577754--64577820	29	2.3	28	80	12	73	28	14	1	55	1.49
64577811--64577883	29	2.6	28	81	12	80	39	4	0	56	1.19
64578030--64578180	3	49.0	3	74	15	87	28	7	1	62	1.31
64578192--64578224	15	2.3	15	89	5	50	27	9	0	63	1.24
64581854--64581894	19	2.1	20	86	4	57	29	17	4	48	1.67
64589984--64590256	44	6.2	45	67	15	124	30	16	25	27	1.97
64590071--64590363	88	3.3	88	69	12	258	29	19	25	26	1.98
64589980--64590410	177	2.4	175	84	5	480	30	18	25	25	1.98
64590071--64590408	88	3.8	88	70	11	219	29	18	25	26	1.98
64590379--64590589	45	4.8	43	68	15	135	29	19	26	25	1.98
64590204--64590742	133	4.1	134	79	6	533	29	19	25	25	1.99
64590683--64590976	133	2.3	131	79	4	301	29	18	21	29	1.97
64590754--64591285	45	11.7	44	67	10	185	35	17	19	28	1.94
64590907--64591268	140	2.6	141	90	1	548	37	16	19	27	1.93
64592610--64592671	9	6.9	9	81	3	72	27	1	0	70	0.96
64592609--64592803	3	63.7	3	67	18	64	29	8	1	60	1.35
64592610--64592672	18	3.5	18	86	0	90	28	1	0	69	0.97
64592763--64592803	23	1.9	22	85	14	59	29	4	4	60	1.38
64592771--64592824	20	2.5	23	79	11	60	24	11	3	61	1.46
64592940--64593085	3	47.7	3	70	14	77	28	6	2	63	1.32
64600378--64600541	43	3.9	41	79	9	170	23	18	25	32	1.97
64600378--64600544	85	2.0	85	82	7	205	23	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64602593--64602645	23	2.3	23	100	0	106	20	11	30	37	1.88
64604623--64604709	43	2.0	43	100	0	174	40	9	27	22	1.85
64606508--64606542	11	2.8	13	83	16	56	57	20	8	14	1.63
64607962--64608075	56	2.0	56	98	0	219	41	21	10	26	1.86
64609176--64609260	29	2.9	27	75	10	71	25	11	22	40	1.88
64609176--64609273	31	3.2	30	73	5	90	25	12	21	40	1.88
64613873--64613913	22	1.9	21	85	5	55	31	0	0	68	0.90
64613873--64613919	22	2.3	20	82	10	51	27	0	0	72	0.85
64616956--64617089	67	2.0	69	85	5	184	39	4	5	50	1.45
64616999--64617047	20	2.8	17	75	19	55	42	4	2	51	1.32
64619868--64619915	11	4.3	11	78	2	51	70	2	4	22	1.15
64619856--64619904	20	2.5	20	80	6	55	71	4	2	22	1.13
64621490--64621549	30	2.0	30	90	0	93	58	13	1	26	1.45
64626879--64626935	28	2.0	28	89	0	87	36	19	19	24	1.94
64628861--64628892	3	10.7	3	100	0	64	65	0	0	34	0.93
64630148--64630204	29	2.0	29	96	0	105	40	8	22	28	1.84
64633627--64633674	24	2.0	24	95	0	87	41	6	31	20	1.77
64640670--64640699	15	1.9	16	93	6	53	40	16	13	30	1.87
64642710--64642778	31	2.2	31	84	0	84	37	14	7	40	1.74
64644083--64644117	17	2.1	17	88	0	52	68	17	0	14	1.21
64646225--64646699	256	1.9	256	89	0	736	30	13	18	37	1.90
64658188--64658615	227	1.9	227	85	0	588	31	19	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64660987--64661443	253	1.8	253	88	0	700	29	14	19	37	1.91
64662454--64662482	2	14.5	2	100	0	58	51	0	0	48	1.00
64666759--64666800	22	2.0	21	86	13	59	52	4	0	42	1.22
64672664--64672736	30	2.4	31	95	2	130	0	17	2	79	0.85
64672685--64672756	30	2.4	30	86	4	92	2	18	5	73	1.15
64672649--64672732	4	22.0	4	73	16	63	0	22	1	76	0.86
64676196--64676268	34	2.1	34	94	0	128	39	24	9	26	1.86
64677438--64677486	24	2.0	24	100	0	98	24	12	26	36	1.91
64679429--64679475	21	2.3	20	85	7	67	61	10	2	25	1.39
64679429--64679470	21	2.0	21	90	4	68	64	11	2	21	1.38
64680160--64680199	21	1.9	21	85	10	55	25	47	7	20	1.75
64680169--64680206	20	1.9	20	84	10	51	26	44	7	21	1.79
64682664--64682697	14	2.4	14	90	5	50	17	0	0	82	0.67
64682689--64682872	96	1.9	97	88	3	282	32	23	14	29	1.95
64689724--64689766	22	2.0	22	100	0	86	34	18	4	41	1.71
64691252--64691294	4	10.8	4	85	14	54	72	0	0	27	0.85
64691256--64691308	25	2.1	25	82	6	63	73	0	3	22	0.99
64695793--64695962	92	1.8	93	92	1	288	29	30	20	20	1.97
64695785--64695953	46	3.7	46	78	15	204	30	30	18	20	1.96
64699905--64700076	93	1.8	93	87	0	254	27	27	21	23	1.99
64702466--64702505	15	2.7	15	88	3	64	60	10	17	12	1.59
64705391--64705562	93	1.8	93	92	0	290	27	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64705383--64705558	46	3.8	46	78	10	196	28	28	20	21	1.98
64707337--64707369	17	2.0	17	94	5	59	36	15	0	48	1.45
64707632--64707905	46	6.0	46	90	0	361	21	23	14	40	1.90
64713559--64713637	38	2.1	38	93	6	135	59	3	12	24	1.50
64714366--64714414	10	4.9	10	85	5	64	65	0	10	24	1.23
64714859--64715092	107	2.2	105	80	5	263	29	17	25	27	1.98
64725980--64726004	11	2.3	11	100	0	50	52	8	12	28	1.66
64736359--64736416	30	1.9	30	89	0	89	41	3	24	31	1.71
64736629--64736659	13	2.4	13	94	0	53	32	0	12	54	1.38
64736754--64736895	50	2.8	50	95	0	248	24	22	31	21	1.98
64743843--64743900	30	1.9	30	85	0	80	43	1	24	31	1.64
64744113--64744143	13	2.4	13	94	0	53	32	0	12	54	1.38
64744238--64744429	50	3.8	50	88	1	278	27	22	29	20	1.99
64744249--64744429	101	1.8	100	90	1	290	27	22	29	20	1.99
64756548--64756582	18	1.9	18	94	0	61	60	8	2	28	1.41
64756623--64756714	29	3.1	29	84	1	121	29	25	3	42	1.70
64774204--64774259	26	2.2	25	78	9	60	25	5	1	67	1.21
64775846--64775967	45	2.7	45	92	0	199	42	13	21	22	1.87
64775846--64775913	23	3.0	23	63	25	54	45	14	19	20	1.85
64780279--64780324	23	2.0	23	100	0	92	21	8	13	56	1.63
64781981--64782040	21	3.1	19	78	11	59	33	3	3	60	1.30
64781969--64782043	10	7.5	10	73	11	64	36	2	2	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64784747--64784784	18	2.1	18	85	9	51	39	5	0	55	1.23
64797026--64797087	31	2.0	31	87	6	90	43	11	9	35	1.73
64798487--64798526	20	2.0	20	85	14	55	57	5	5	32	1.42
64809118--64809194	38	2.0	38	100	0	154	53	10	7	28	1.63
64812519--64812544	11	2.4	11	100	0	52	0	7	0	92	0.39
64818368--64818408	12	3.4	12	89	0	55	65	24	7	2	1.30
64818379--64818408	4	7.5	4	92	0	51	70	26	3	0	1.03
64824583--64824616	17	1.9	18	88	5	52	23	0	8	67	1.18
64824793--64824852	29	2.1	29	80	0	66	28	6	15	50	1.69
64827028--64827078	27	2.0	26	85	11	70	56	3	0	39	1.18
64827093--64827133	21	2.0	21	90	0	64	58	0	2	39	1.11
64830167--64830197	16	2.0	16	93	6	55	48	0	12	38	1.42
64830405--64830434	12	2.5	12	94	0	51	16	13	16	53	1.73
64834534--64834855	46	7.0	46	94	1	511	38	14	24	22	1.91
64834534--64834892	46	7.8	46	93	1	506	40	14	23	21	1.90
64840168--64840194	4	6.8	4	100	0	54	25	0	0	74	0.83
64850325--64850366	21	2.0	21	100	0	84	57	4	14	23	1.56
64854342--64854411	27	2.6	27	82	13	90	71	1	8	18	1.19
64854394--64854418	3	8.3	3	100	0	50	64	0	0	36	0.94
64856315--64856346	12	2.7	12	100	0	64	53	0	15	31	1.43
64867219--64867248	13	2.3	13	94	0	51	70	0	23	6	1.11
64868328--64868366	19	2.1	19	90	0	60	43	0	20	35	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64872456--64872631	46	3.8	46	75	12	180	19	19	30	30	1.97
64872453--64872624	93	1.8	93	91	0	281	19	20	30	29	1.97
64876539--64876602	29	2.2	30	83	5	78	28	9	18	43	1.81
64877742--64877782	15	2.9	14	80	20	57	29	0	0	70	0.87
64878322--64878451	64	2.0	64	100	0	260	32	10	9	47	1.70
64888804--64888858	27	2.0	27	100	0	110	36	10	14	38	1.81
64893773--64893835	30	2.1	30	90	0	99	25	4	14	55	1.58
64899833--64899930	24	4.1	24	89	2	135	11	35	15	37	1.83
64899845--64899908	12	5.3	12	71	0	56	9	35	17	37	1.82
64903721--64903764	17	2.4	18	85	11	54	34	0	2	63	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259