genome.fa.s9.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  148  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48449640--48449720	40	2.0	40	97	0	153	35	20	7	35	1.81
48451397--48451604	103	2.0	103	88	0	308	21	16	14	47	1.82
48452976--48453008	15	2.3	15	89	5	50	57	9	0	33	1.30
48459194--48459223	12	2.6	12	94	5	53	30	0	40	30	1.57
48468736--48468842	34	3.1	34	77	5	99	28	19	23	28	1.98
48470678--48470863	84	2.2	84	85	0	255	51	10	8	30	1.64
48472643--48472683	6	6.8	6	97	0	64	85	9	4	0	0.73
48473654--48473679	13	2.0	13	100	0	52	23	15	15	46	1.83
48475244--48475283	14	2.9	14	84	0	53	42	17	7	32	1.77
48475209--48475275	34	1.9	35	87	3	100	44	13	10	31	1.77
48475339--48475530	87	2.2	87	86	5	255	45	8	10	35	1.70
48475302--48475593	87	3.4	86	79	9	242	42	11	9	35	1.74
48475555--48475771	89	2.4	89	87	4	305	40	13	12	33	1.82
48477554--48477588	12	2.9	12	91	0	61	57	0	28	14	1.38
48478783--48478857	20	3.8	19	76	13	71	36	1	1	61	1.13
48480338--48480375	3	12.7	3	94	0	67	65	2	0	31	1.06
48484791--48484854	24	2.7	24	78	9	60	31	6	14	48	1.68
48485008--48485063	3	18.7	3	100	0	112	67	0	0	32	0.91
48487678--48487715	3	13.0	3	86	5	51	31	0	39	28	1.57
48490560--48490615	20	2.8	20	83	2	69	33	23	16	26	1.95
48503276--48503670	196	2.0	196	97	0	745	30	11	20	37	1.88
48507275--48507351	29	2.7	28	78	6	82	24	12	22	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48507279--48507399	57	2.1	58	83	11	160	24	10	21	42	1.84
48517128--48517242	43	2.7	44	81	9	121	24	18	24	33	1.97
48519928--48519958	16	1.9	16	93	0	53	41	0	25	32	1.56
48522799--48522828	15	2.0	15	93	0	51	83	3	13	0	0.77
48526258--48526292	17	2.1	17	89	5	54	20	5	20	54	1.64
48541341--48541471	69	1.9	70	88	1	201	29	24	17	28	1.97
48542460--48542494	17	2.1	17	89	5	54	22	2	0	74	0.95
48554559--48554596	19	2.0	19	85	10	51	68	0	10	21	1.19
48559720--48559906	21	9.0	21	71	10	132	19	22	15	42	1.88
48559709--48559862	42	3.7	42	77	10	181	19	20	14	44	1.86
48562431--48562614	71	2.5	72	88	3	271	25	28	24	22	1.99
48567378--48567505	44	2.9	44	89	0	193	42	10	21	25	1.85
48568743--48568787	22	2.0	22	100	0	90	46	8	22	22	1.79
48575428--48575470	22	2.0	22	85	0	59	13	30	27	27	1.95
48575435--48575479	22	2.0	22	87	8	65	11	26	28	33	1.91
48579758--48579848	5	16.8	5	77	17	76	75	2	2	19	1.01
48579759--48579860	6	16.2	6	75	17	66	75	1	2	19	1.03
48579796--48579835	17	2.4	17	86	0	53	75	2	2	20	1.04
48579758--48579844	42	2.1	42	87	8	124	75	2	2	19	1.01
48579831--48580035	3	67.7	3	73	5	162	60	0	7	31	1.32
48580713--48580749	16	2.3	16	90	0	56	81	0	18	0	0.70
48580723--48580756	16	2.1	16	94	0	59	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48581109--48581146	18	2.2	17	86	13	51	10	0	39	50	1.37
48581581--48581842	140	1.9	140	84	4	350	27	24	17	31	1.97
48581582--48582619	44	22.8	45	68	14	309	29	22	17	31	1.96
48581582--48581982	96	4.4	94	74	9	330	28	23	16	31	1.96
48581582--48582018	180	2.4	185	81	4	510	27	23	17	31	1.97
48582315--48582806	181	2.7	179	80	7	557	29	21	16	33	1.95
48584963--48585032	28	2.5	28	80	13	81	22	12	35	28	1.91
48592494--48592566	28	2.6	28	83	10	87	23	12	34	30	1.91
48593604--48593637	18	1.9	18	88	5	52	41	11	17	29	1.85
48594310--48594365	6	9.7	6	76	7	62	0	21	0	78	0.75
48594310--48594368	11	5.2	12	78	10	54	0	20	0	79	0.73
48599941--48600015	6	12.2	6	79	12	55	74	1	5	18	1.08
48599939--48600043	25	4.4	24	73	15	76	69	0	5	23	1.16
48599940--48599999	17	3.5	16	80	15	59	75	1	3	20	1.04
48599983--48600217	3	78.3	3	76	6	208	59	1	7	31	1.33
48600819--48600857	9	4.7	9	90	9	57	71	0	28	0	0.86
48602229--48602310	31	2.7	30	83	5	103	35	6	9	48	1.61
48602230--48602321	30	3.1	29	75	10	87	33	5	9	51	1.58
48603615--48603735	28	4.2	28	81	4	136	38	2	18	40	1.64
48603625--48603735	56	2.0	56	85	3	152	39	2	17	40	1.63
48603930--48604234	127	2.4	127	84	5	399	37	18	17	27	1.93
48609254--48609401	64	2.3	64	87	6	205	49	10	4	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48611389--48611460	19	3.6	19	76	16	67	65	1	1	31	1.10
48612198--48612255	29	2.1	27	87	6	80	50	8	8	32	1.64
48615270--48615336	16	4.2	16	73	7	55	50	1	16	31	1.54
48615532--48615608	39	2.0	39	82	5	93	45	0	0	54	0.99
48615522--48615608	40	2.1	41	81	10	97	45	0	0	54	1.00
48615915--48615940	13	2.0	13	100	0	52	0	0	7	92	0.39
48621676--48621722	22	2.1	22	84	7	60	65	0	0	34	0.93
48621676--48621716	18	2.3	18	87	4	57	65	0	0	34	0.93
48627981--48628019	14	2.8	14	84	0	51	51	10	7	30	1.64
48637592--48637628	16	2.3	16	86	13	58	40	0	0	59	0.97
48638429--48638508	33	2.4	33	89	0	124	36	22	18	22	1.95
48638786--48638842	29	2.0	29	96	0	105	28	17	26	28	1.98
48659493--48659534	22	1.9	22	85	9	59	50	11	7	30	1.66
48664945--48665119	87	2.0	87	100	0	350	31	14	20	33	1.93
48665443--48665483	6	6.8	6	97	0	64	43	0	17	39	1.49
48669750--48669933	92	2.0	92	100	0	368	25	13	29	32	1.93
48671590--48671818	113	2.0	113	100	0	458	40	6	13	39	1.70
48671769--48671951	92	2.0	92	100	0	366	46	9	6	36	1.63
48672266--48672352	40	2.6	30	70	29	84	33	6	21	37	1.80
48672261--48672340	40	2.0	40	100	0	160	35	7	20	37	1.81
48672292--48672971	336	2.0	336	99	0	1333	36	6	12	44	1.69
48672797--48673027	115	2.0	115	100	0	462	34	10	11	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48674856--48674959	55	1.9	55	93	0	181	17	10	17	54	1.69
48674930--48675094	82	2.0	82	100	0	330	23	16	16	42	1.89
48675958--48676056	49	2.0	49	100	0	198	34	8	18	39	1.80
48676505--48676595	45	2.0	45	97	0	173	38	9	6	45	1.64
48680642--48680860	45	5.0	45	76	8	186	25	15	26	33	1.95
48680658--48680860	86	2.4	86	86	1	273	26	16	26	31	1.96
48684112--48684270	42	3.7	42	75	7	124	32	27	18	22	1.97
48684855--48684963	42	2.6	42	97	1	202	17	42	22	18	1.89
48689180--48689247	34	2.0	34	100	0	136	29	29	23	17	1.97
48693764--48693916	45	3.5	43	77	7	166	26	17	25	30	1.97
48693764--48693969	41	4.8	43	76	9	181	26	18	24	30	1.98
48693764--48693969	86	2.4	86	86	3	281	26	18	24	30	1.98
48702470--48702643	38	4.5	38	86	2	215	30	25	22	21	1.99
48702470--48702659	76	2.5	78	83	3	249	30	25	22	22	1.99
48706267--48706306	21	1.9	21	89	0	62	12	5	22	60	1.52
48706614--48706913	151	2.0	150	94	0	528	35	14	19	31	1.91
48711633--48711750	29	3.7	31	78	11	109	33	1	16	48	1.56
48711693--48711779	34	2.5	35	86	1	113	34	4	18	42	1.71
48715248--48715985	47	15.4	47	82	9	848	32	8	28	30	1.86
48715566--48715603	16	2.4	16	95	0	67	36	2	18	42	1.64
48715472--48715699	110	2.1	111	91	1	368	34	7	26	32	1.83
48715519--48715646	63	2.0	63	90	0	202	35	7	25	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48715425--48715887	159	3.0	157	86	6	591	33	7	28	30	1.85
48716104--48716182	37	2.1	37	90	0	122	24	18	31	25	1.98
48717396--48717706	40	7.8	40	89	2	455	23	20	29	26	1.99
48721120--48721753	47	13.4	47	93	1	1025	33	8	29	29	1.87
48721120--48721698	237	2.4	237	96	0	1086	33	8	27	29	1.86
48721872--48721950	37	2.1	37	90	0	122	24	18	31	25	1.98
48723791--48723829	16	2.3	18	82	8	55	25	0	23	51	1.49
48727190--48727230	19	2.2	19	91	4	66	26	29	0	43	1.55
48727179--48727230	19	2.7	20	82	8	63	26	32	0	40	1.57
48727509--48727545	17	2.1	18	90	5	58	37	2	0	59	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259