genome.fa.s9.2.7.7.80.10.50.1000.217.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  217  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68747588--68747619	15	2.1	15	100	0	64	34	43	0	21	1.53
68748192--68748221	2	15.0	2	100	0	60	0	50	0	50	1.00
68751450--68751474	6	4.2	6	100	0	50	52	48	0	0	1.00
68753994--68754038	22	2.0	22	91	0	72	33	2	15	48	1.57
68757768--68757812	22	2.0	22	91	0	72	33	2	15	48	1.57
68760114--68760256	70	2.0	70	98	0	277	29	21	12	36	1.90
68765994--68766063	6	11.7	6	70	11	54	72	1	4	21	1.09
68765997--68766063	12	5.5	12	77	10	64	71	1	4	22	1.12
68766012--68766061	23	2.2	23	89	7	75	74	2	2	22	1.03
68770008--68770086	30	2.6	30	85	0	95	31	34	25	8	1.87
68770017--68770093	30	2.6	30	87	0	100	29	33	24	11	1.91
68776464--68776600	55	2.5	55	80	3	141	18	25	29	27	1.98
68783609--68783637	12	2.4	12	100	0	58	37	6	10	44	1.65
68783823--68783856	15	2.3	15	94	0	59	35	14	17	32	1.91
68785310--68785344	3	11.7	3	93	0	61	62	0	34	2	1.10
68785948--68785998	25	2.0	25	88	0	75	43	5	9	41	1.62
68786286--68786322	2	18.5	2	94	0	65	0	54	0	45	1.00
68792379--68792436	3	19.3	3	96	0	107	65	0	32	1	1.03
68793111--68793168	19	3.1	19	78	7	66	63	1	0	34	1.04
68793137--68793175	18	2.1	19	85	4	53	64	0	2	33	1.08
68803470--68804047	204	2.8	205	85	2	829	29	21	17	31	1.96
68827844--68827899	14	3.9	14	73	13	51	55	1	5	37	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68830547--68830605	29	2.0	29	100	0	118	23	33	0	42	1.55
68832043--68832110	31	2.3	29	90	9	104	44	14	4	36	1.66
68832052--68832110	31	1.9	31	100	0	118	44	13	5	37	1.66
68839883--68840608	361	2.0	362	92	1	1213	38	15	13	32	1.87
68851327--68851373	23	2.0	23	84	8	60	40	2	0	57	1.11
68853908--68854535	326	1.9	326	81	3	755	34	18	11	35	1.87
68860412--68860689	92	3.0	92	88	1	407	46	14	12	25	1.81
68895487--68895725	41	5.8	41	88	6	299	27	20	24	28	1.99
68903114--68903352	41	5.8	41	88	6	299	27	20	24	28	1.99
68904603--68904649	15	3.1	15	76	14	51	34	0	2	63	1.06
68905329--68905488	76	2.1	76	92	1	266	40	1	8	50	1.43
68916431--68916471	16	2.6	15	85	11	55	43	0	9	46	1.36
68924938--68925024	7	12.6	7	78	7	61	49	27	0	22	1.50
68924924--68924970	21	2.2	21	80	0	58	51	25	0	23	1.49
68925029--68925129	41	2.5	41	85	3	123	38	16	26	17	1.92
68925160--68925226	7	9.4	7	80	3	62	23	1	22	52	1.56
68925159--68925227	22	3.2	22	76	13	72	23	1	21	53	1.54
68928084--68928163	28	2.8	29	84	3	108	15	3	33	47	1.63
68928349--68928393	22	2.0	23	91	4	74	20	17	20	42	1.90
68934174--68934224	18	2.8	18	84	0	66	31	31	0	37	1.58
68940810--68940865	29	1.9	29	100	0	112	42	17	17	21	1.89
68943316--68943429	33	3.5	32	79	7	124	37	13	22	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68943422--68943507	31	2.8	31	83	0	118	27	18	26	26	1.98
68943597--68943648	27	1.9	27	92	0	86	42	9	25	23	1.84
68943716--68943777	34	1.9	31	83	9	79	27	12	25	33	1.93
68945653--68945681	14	2.1	14	93	6	51	34	0	10	55	1.34
68946495--68946605	43	2.6	43	82	0	132	25	16	25	33	1.96
68955900--68956087	45	4.2	45	92	0	304	39	15	20	25	1.91
68956724--68956755	16	2.0	16	100	0	64	12	12	25	50	1.75
68957031--68957142	46	2.5	46	97	1	208	26	23	13	36	1.92
68957153--68957340	45	4.2	45	92	0	304	39	15	20	25	1.91
68957659--68957705	20	2.3	20	88	0	67	31	19	27	21	1.97
68957887--68957946	30	2.0	30	96	0	111	23	21	20	35	1.96
68957842--68957989	75	2.0	75	97	0	278	24	20	17	37	1.94
68957917--68958020	45	2.3	45	88	0	145	25	19	17	38	1.93
68958134--68958165	16	2.0	16	100	0	64	50	25	12	12	1.75
68960553--68960578	13	2.0	13	100	0	52	30	38	15	15	1.88
68963230--68963259	15	2.1	14	93	6	51	76	23	0	0	0.78
68964766--68964829	19	3.6	18	77	6	67	56	0	4	39	1.20
68970887--68970978	28	3.3	28	66	14	82	34	4	13	47	1.62
68970893--68971005	55	2.1	55	96	0	208	38	4	11	45	1.61
68975373--68975421	3	16.3	3	95	0	89	65	2	32	0	1.04
68986828--68986892	21	3.2	21	73	20	75	10	26	23	40	1.87
68986810--68986909	39	2.6	39	95	0	173	12	26	25	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68988818--68988871	25	2.2	25	100	0	108	37	11	12	38	1.79
68989475--68989587	42	2.7	42	72	14	97	24	22	25	27	2.00
68990036--68990067	12	2.6	13	90	9	50	18	6	25	50	1.70
68990931--68991020	45	2.0	45	97	0	171	42	16	13	27	1.86
68991657--68991699	15	3.0	14	76	6	50	58	0	9	32	1.30
68992001--68992420	209	2.0	209	98	0	815	33	20	15	31	1.93
68995502--68995544	21	2.0	21	95	0	77	23	4	25	46	1.71
69003055--69003364	155	2.0	155	97	0	584	41	8	16	33	1.79
69004773--69004802	3	9.7	3	92	7	51	33	3	0	63	1.11
69010642--69010718	34	2.3	34	88	6	113	25	20	12	40	1.89
69027221--69027248	14	2.0	14	100	0	56	50	7	21	21	1.72
69032938--69032970	14	2.3	15	89	5	50	27	9	6	57	1.53
69042545--69042576	12	2.6	13	90	9	50	50	25	6	18	1.70
69043062--69043182	44	2.9	41	79	11	127	27	26	21	24	1.99
69045433--69045615	79	2.3	81	84	7	232	25	27	22	24	2.00
69045412--69045615	40	5.1	40	82	8	238	25	27	22	24	2.00
69054973--69055356	128	3.0	127	87	2	585	37	17	15	29	1.90
69069238--69069269	6	5.3	6	100	0	64	50	15	15	18	1.79
69070194--69070243	16	3.4	15	81	15	50	36	0	2	62	1.07
69070203--69070245	13	3.1	13	81	18	59	39	0	0	60	0.97
69070209--69070243	8	4.4	8	92	0	61	40	0	0	60	0.97
69070203--69070246	16	3.0	15	87	12	65	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69076526--69076649	49	2.5	49	84	3	151	30	19	26	23	1.98
69077929--69078102	47	3.7	47	83	6	203	33	27	18	20	1.96
69085388--69085525	46	3.0	46	83	1	177	34	23	18	23	1.97
69103711--69103748	18	2.1	18	90	0	58	7	10	2	78	1.04
69109557--69109776	109	2.0	109	92	1	370	29	21	15	33	1.95
69111003--69111058	27	2.1	27	100	0	112	57	7	21	14	1.61
69112215--69112520	46	6.5	46	72	13	160	30	19	26	23	1.98
69112980--69113046	33	2.0	33	100	0	134	20	11	20	46	1.82
69114435--69114751	27	11.7	27	85	0	382	39	20	9	31	1.84
69114705--69114819	27	4.3	27	85	2	124	34	16	19	29	1.94
69115131--69115194	31	2.0	32	84	3	85	18	23	20	37	1.94
69115332--69115512	6	29.3	6	70	17	104	19	17	13	49	1.80
69115335--69115452	25	4.5	25	77	12	119	20	18	13	47	1.82
69115332--69115429	31	3.4	30	75	16	107	19	18	14	47	1.82
69115332--69115458	56	2.3	56	91	0	209	20	17	13	48	1.80
69115354--69115491	31	4.5	31	76	10	129	19	18	13	48	1.81
69115410--69115504	37	2.6	37	86	0	127	21	16	11	50	1.76
69120607--69121146	183	2.9	183	95	0	936	25	25	20	28	1.99
69123287--69123318	3	10.7	3	100	0	64	34	0	0	65	0.93
69130516--69130586	29	2.4	29	79	6	72	42	18	8	30	1.80
69132626--69132658	12	2.8	12	90	0	57	15	39	3	42	1.62
69134419--69134605	95	2.0	95	98	0	365	33	14	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69134511--69134544	17	2.0	17	100	0	68	35	5	11	47	1.65
69135595--69135684	46	2.0	46	82	2	110	20	20	15	44	1.87
69135658--69135718	29	2.1	29	100	0	122	19	22	18	39	1.92
69135615--69135763	75	2.0	75	86	0	208	19	23	15	41	1.89
69135686--69135815	46	2.8	46	90	0	206	18	23	15	43	1.88
69141870--69141922	27	2.0	27	84	0	70	1	18	9	69	1.25
69141959--69141997	8	4.8	8	83	3	51	53	2	5	38	1.37
69142773--69142834	17	3.6	17	93	0	88	24	25	33	16	1.95
69143385--69143475	40	2.3	40	86	0	128	24	21	6	47	1.75
69145699--69145724	11	2.4	11	100	0	52	30	0	0	69	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259