genome.fa.s9.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  113  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491682--36491714	16	2.1	16	100	0	66	30	0	30	39	1.57
36506195--36506387	40	4.8	40	88	1	271	25	29	20	23	1.99
36509653--36509743	45	2.0	45	93	0	155	40	3	10	45	1.56
36509655--36509724	14	4.5	17	72	20	62	42	1	10	45	1.46
36524136--36524319	79	2.3	81	82	7	225	24	22	27	25	2.00
36524135--36524319	40	4.7	40	83	6	225	24	22	27	25	2.00
36524188--36524352	79	2.1	79	83	6	201	26	20	27	26	1.99
36531303--36531386	9	8.9	9	70	18	55	58	2	3	35	1.28
36531309--36531383	29	2.6	29	75	8	73	58	2	4	34	1.31
36531556--36531584	3	9.7	3	100	0	58	68	0	0	31	0.89
36531718--36531748	15	2.1	15	100	0	62	19	6	6	67	1.35
36534730--36534761	13	2.5	13	94	0	55	6	12	15	65	1.44
36537308--36537349	21	2.0	21	90	0	66	28	38	4	28	1.77
36540742--36541053	40	7.8	40	94	0	516	25	23	26	25	2.00
36545079--36545220	40	3.6	40	80	12	159	26	22	27	23	2.00
36545079--36545238	40	4.0	39	78	12	141	26	22	26	23	2.00
36545079--36545226	79	1.9	80	81	7	185	27	22	27	22	1.99
36545445--36545802	47	7.6	47	92	2	556	31	8	30	29	1.86
36545921--36545999	37	2.1	37	90	0	122	24	18	31	25	1.98
36549252--36549459	40	5.2	40	82	7	235	25	21	26	26	1.99
36549255--36549438	79	2.3	81	83	6	223	23	22	27	26	2.00
36549290--36549463	79	2.2	78	80	10	192	26	21	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36563504--36563626	33	3.8	33	90	5	196	19	8	40	30	1.82
36579544--36579702	40	4.0	40	91	2	250	27	26	22	23	1.99
36581640--36581824	40	4.6	39	80	9	171	24	22	28	25	1.99
36581693--36581847	79	2.0	79	81	7	181	26	20	27	26	1.99
36593068--36593121	23	2.3	23	96	0	99	27	20	35	16	1.94
36611499--36611798	33	9.1	33	79	1	226	20	21	15	43	1.88
36611508--36611798	66	4.4	66	78	3	262	20	21	15	42	1.88
36611508--36611753	99	2.5	98	78	4	269	19	21	16	42	1.89
36611508--36611767	132	2.0	132	83	4	328	20	21	16	42	1.89
36614536--36614636	29	3.5	28	87	1	139	29	28	13	27	1.95
36617485--36617760	49	5.6	50	85	6	377	27	13	23	35	1.92
36619228--36619336	44	2.5	43	78	7	105	23	14	28	33	1.94
36621851--36621912	31	2.0	31	84	6	81	46	8	17	27	1.76
36624093--36624122	8	3.6	8	95	4	51	13	0	26	60	1.34
36624432--36624494	30	2.1	29	94	2	108	25	19	22	33	1.97
36627226--36627266	21	2.0	21	85	9	57	26	0	17	56	1.41
36629039--36629082	20	2.2	20	88	8	63	45	0	18	36	1.49
36631142--36631180	20	1.9	20	84	5	51	23	0	20	56	1.42
36634058--36634137	34	2.3	34	82	4	106	26	25	28	20	1.99
36644259--36644617	48	7.4	48	81	0	394	26	18	28	26	1.98
36644259--36644617	96	3.7	96	90	0	547	26	18	28	26	1.98
36654190--36654273	43	2.0	43	90	0	132	27	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36660643--36660721	37	2.1	37	88	4	115	25	30	18	25	1.98
36660840--36661571	47	15.6	47	96	0	1284	29	31	8	31	1.87
36661796--36661977	40	4.6	40	82	6	210	25	27	21	25	1.99
36661796--36661977	79	2.3	80	82	7	201	25	27	21	25	1.99
36664254--36664712	40	11.5	40	94	0	767	25	30	21	22	1.99
36666736--36666916	28	6.5	28	94	1	285	30	29	14	25	1.95
36666736--36666944	84	2.5	84	87	3	271	30	29	14	25	1.95
36672289--36673022	47	15.6	47	96	0	1315	29	30	8	31	1.87
36673247--36673427	79	2.3	80	83	8	219	24	28	22	24	1.99
36673247--36673427	40	4.6	40	82	8	219	24	28	22	24	1.99
36678691--36678774	43	2.0	43	87	0	123	27	29	16	26	1.97
36680791--36681151	48	7.5	48	76	3	323	27	19	26	26	1.99
36680791--36681151	96	3.7	96	87	2	474	27	19	26	26	1.99
36680791--36681171	144	2.6	142	79	5	370	28	20	25	25	1.99
36687366--36687451	42	2.0	42	100	0	172	20	13	34	30	1.92
36711720--36711768	24	2.0	24	88	7	73	42	26	8	22	1.81
36718245--36718414	46	3.7	45	69	16	123	21	18	29	30	1.97
36726639--36726677	19	2.1	19	100	0	78	33	20	20	25	1.97
36733736--36733889	55	2.8	55	84	4	188	25	15	28	29	1.96
36733735--36733912	27	6.6	27	83	5	180	26	15	28	29	1.96
36733732--36733912	82	2.2	81	84	2	238	26	16	28	29	1.96
36749921--36750106	49	3.8	49	85	3	216	24	17	26	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36753502--36753745	40	6.1	40	84	8	293	25	27	22	24	2.00
36753521--36753745	119	1.9	120	85	6	314	26	27	22	24	2.00
36760871--36761088	40	5.5	40	86	5	273	26	26	22	25	2.00
36760871--36761088	119	1.8	120	83	6	291	26	26	22	25	2.00
36767668--36767844	40	4.4	40	82	4	198	23	21	27	27	1.99
36767668--36767844	80	2.2	80	86	5	234	23	21	27	27	1.99
36768047--36768166	59	2.0	59	100	0	240	34	6	18	40	1.77
36776116--36776323	80	2.6	80	96	0	371	22	20	28	28	1.98
36776116--36776372	40	6.4	40	80	4	288	22	20	28	28	1.99
36784241--36784364	43	2.9	43	78	5	126	27	16	25	31	1.96
36787581--36787611	9	3.6	9	95	4	55	12	29	12	45	1.80
36796560--36796611	25	2.1	25	85	0	68	30	21	19	28	1.97
36801420--36801653	40	5.9	39	84	4	281	24	26	23	25	2.00
36809474--36809832	47	7.7	47	92	2	541	28	30	8	32	1.87
36809474--36809832	93	3.9	93	91	2	546	28	30	8	32	1.87
36809474--36809832	140	2.6	138	89	3	517	28	30	8	32	1.87
36827744--36827921	40	4.5	40	86	3	218	24	28	24	22	1.99
36835838--36836064	39	5.8	38	86	5	258	23	28	23	24	2.00
36835838--36836066	79	2.9	77	84	8	282	23	27	24	24	2.00
36847989--36848069	27	3.0	26	85	5	108	37	20	24	17	1.94
36855821--36855931	27	4.1	27	87	5	154	36	21	24	17	1.94
36864079--36864132	22	2.5	22	87	3	74	12	33	37	16	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36865805--36865860	28	2.0	28	100	0	112	17	28	35	17	1.93
36866226--36866259	18	1.9	18	94	5	61	29	14	11	44	1.81
36867381--36867470	29	3.1	29	90	1	137	28	31	14	25	1.95
36867678--36867714	16	2.3	16	90	0	56	8	18	21	51	1.72
36876069--36876253	40	4.7	40	82	4	205	24	27	23	24	2.00
36876069--36876253	79	2.3	80	83	7	216	24	27	23	24	2.00
36885128--36885165	20	1.9	20	88	0	58	18	13	31	36	1.89
36886410--36886468	30	2.0	30	100	0	118	38	23	6	30	1.81
36890832--36890866	18	1.9	18	88	0	52	25	8	5	60	1.49
36897701--36897820	43	2.8	42	79	7	143	27	23	17	31	1.97
36907457--36907491	18	2.0	18	94	5	63	17	28	40	14	1.88
36911005--36911295	47	6.1	47	87	4	393	32	12	29	26	1.92
36911105--36911179	23	3.2	23	62	23	57	29	10	32	28	1.90
36911269--36911359	46	2.0	46	86	0	128	32	8	31	26	1.87
36911014--36911344	141	2.3	140	84	7	382	32	11	29	25	1.92
36911506--36911651	37	3.9	37	94	0	238	24	19	29	26	1.98
36912907--36913298	40	9.8	40	92	0	613	23	22	29	25	1.99
36917042--36917238	47	4.1	47	84	7	277	30	12	29	27	1.93
36917142--36917216	23	3.2	23	62	23	57	29	10	32	28	1.90
36917453--36917596	37	3.9	37	96	0	252	23	18	31	26	1.98
36922131--36922181	20	2.7	19	82	14	54	41	0	21	37	1.54
36924443--36924624	40	4.6	40	94	2	305	24	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36935063--36935113	20	2.7	19	82	14	54	41	0	21	37	1.54
36935810--36935932	46	2.6	48	83	3	142	32	20	25	21	1.98
36950277--36950590	47	6.7	45	71	10	197	26	18	29	25	1.98
36950274--36950489	47	4.8	44	76	11	204	25	18	29	26	1.98
36950274--36950489	91	2.4	91	88	0	315	25	18	29	26	1.98
36950691--36950720	12	2.5	12	94	0	51	43	6	33	16	1.74
36953948--36954009	30	2.1	29	82	8	72	37	3	27	32	1.73
36961298--36961725	40	10.7	40	95	0	757	30	20	27	21	1.98
36980208--36980241	13	2.6	13	100	0	68	5	32	5	55	1.48
36980782--36980967	95	2.0	94	85	1	255	37	21	16	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259