genome.fa.s9.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  140  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45513898--45513937	15	3.0	13	86	13	55	25	7	0	67	1.16
45513914--45513956	16	2.5	19	75	25	58	20	4	2	72	1.14
45513902--45513967	29	2.3	29	82	12	82	22	6	1	69	1.19
45520585--45520611	13	2.1	13	100	0	54	70	0	22	7	1.12
45524121--45524637	132	3.9	132	82	5	582	35	18	18	27	1.95
45528162--45528260	30	3.3	30	89	0	144	25	48	7	19	1.74
45542227--45542289	33	1.9	33	100	0	126	31	14	9	44	1.77
45545229--45545305	32	2.4	32	84	0	100	24	25	32	16	1.96
45548815--45548887	27	2.7	26	83	6	83	47	1	12	38	1.50
45562553--45562635	33	2.7	30	82	10	112	38	8	12	40	1.73
45564355--45564512	68	2.3	68	97	0	298	24	30	14	31	1.95
45564355--45564538	68	2.7	67	91	5	264	23	28	14	33	1.94
45570930--45571076	19	7.2	19	66	23	59	59	2	1	36	1.20
45570925--45570981	19	2.9	19	79	10	62	64	0	0	35	0.93
45570935--45571002	28	2.4	29	82	9	95	55	0	0	44	0.99
45570930--45571067	10	14.4	9	67	15	64	60	2	1	35	1.21
45570938--45571076	28	4.9	27	71	15	93	58	2	1	37	1.22
45571328--45571432	10	10.2	10	68	16	63	32	1	0	64	1.11
45571327--45571424	53	1.9	50	87	10	144	32	2	1	64	1.12
45571322--45571473	9	15.6	9	71	15	63	32	1	1	64	1.13
45571377--45571464	37	2.3	39	82	7	108	32	0	2	64	1.06
45571568--45571804	86	2.7	87	84	5	291	35	10	17	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45571560--45571809	89	2.9	86	78	13	269	35	10	17	37	1.84
45572490--45572524	6	5.8	6	93	0	61	48	17	20	14	1.81
45581489--45581517	14	2.1	14	100	0	58	13	27	20	37	1.91
45583321--45583359	19	2.1	19	90	0	60	64	5	0	30	1.15
45584635--45584687	15	3.3	15	73	19	52	43	0	1	54	1.11
45584788--45584822	18	1.9	18	88	0	52	62	2	0	34	1.10
45585903--45586192	41	7.1	41	88	5	340	35	24	22	17	1.95
45586453--45586488	15	2.5	15	86	4	56	19	5	30	44	1.73
45591300--45591346	19	2.5	19	76	10	51	21	2	4	72	1.12
45591608--45591884	43	6.5	42	83	5	304	24	18	29	27	1.98
45591615--45591884	86	3.2	85	84	4	355	24	18	29	27	1.98
45591615--45591884	128	2.1	129	87	2	391	24	18	29	27	1.98
45601468--45601498	16	1.9	16	100	0	62	64	0	3	32	1.09
45602301--45602369	35	2.0	34	83	8	86	43	0	1	55	1.08
45617926--45617974	23	2.1	24	88	3	73	55	2	0	42	1.11
45621091--45621217	66	1.9	66	88	0	191	34	14	6	44	1.70
45622441--45622490	26	1.9	26	92	8	84	54	26	2	18	1.54
45622440--45622491	9	5.9	9	86	8	72	53	25	1	19	1.55
45625580--45625624	20	2.2	21	88	11	67	6	15	2	75	1.11
45631315--45631442	45	2.9	45	86	1	195	22	23	13	40	1.89
45641837--45641942	55	1.9	56	80	7	126	43	3	6	46	1.47
45644900--45644948	20	2.5	20	93	0	80	24	6	20	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45648125--45648154	5	6.0	5	100	0	60	80	0	20	0	0.72
45648996--45649050	26	2.1	26	100	0	110	16	14	32	36	1.89
45649000--45649058	26	2.3	26	93	0	100	16	11	30	40	1.85
45662192--45662268	14	5.0	15	71	20	52	42	15	9	32	1.78
45662208--45662247	20	2.0	20	90	0	62	50	12	10	27	1.72
45662196--45662262	34	1.9	35	90	3	109	46	13	8	31	1.74
45662231--45662270	14	2.9	14	84	0	53	42	17	7	32	1.77
45667788--45667847	30	2.0	30	93	0	102	58	15	1	25	1.46
45668508--45668575	33	2.1	32	94	2	118	54	14	4	26	1.59
45669391--45669481	45	2.0	45	97	0	173	24	20	13	41	1.88
45670036--45670112	23	3.2	23	66	10	64	38	0	20	40	1.53
45670014--45670112	49	2.0	49	96	0	180	38	1	20	40	1.59
45670012--45670095	26	3.4	26	67	11	77	38	1	20	40	1.60
45678413--45678475	24	2.7	24	80	2	74	25	12	17	44	1.84
45678413--45678482	23	3.0	23	78	2	77	27	11	17	44	1.82
45684654--45684743	35	2.6	35	86	6	121	40	0	14	45	1.45
45684835--45685215	124	3.1	124	84	4	456	39	16	15	28	1.89
45690137--45690193	28	2.0	28	83	6	71	52	0	3	43	1.18
45690242--45690277	17	2.1	17	94	0	63	75	0	19	5	1.00
45690243--45690310	11	6.3	10	76	15	55	72	1	22	4	1.11
45690243--45690316	28	2.7	29	78	14	75	71	1	22	4	1.10
45691226--45691319	40	2.3	40	90	1	143	31	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45691422--45691494	37	1.9	38	86	2	103	50	27	0	21	1.49
45691639--45691682	15	3.0	15	83	3	54	20	2	29	47	1.62
45692672--45692697	3	8.7	3	100	0	52	69	0	0	30	0.89
45698716--45698743	3	9.3	3	100	0	56	32	0	35	32	1.58
45701641--45701679	19	2.1	19	85	0	51	25	2	7	64	1.33
45701652--45701694	19	2.3	18	80	11	50	20	2	6	69	1.23
45707673--45707758	43	2.0	43	88	0	127	55	6	8	29	1.55
45707857--45707886	12	2.5	12	94	0	51	36	40	0	23	1.55
45708935--45708978	17	2.5	17	82	17	54	70	0	0	29	0.88
45715962--45716000	17	2.3	17	86	0	51	71	2	23	2	1.10
45717740--45717917	46	3.8	46	79	4	214	28	28	20	21	1.98
45717748--45717919	93	1.8	93	92	0	290	27	29	20	21	1.98
45726662--45726701	19	2.0	20	85	14	55	32	45	2	20	1.64
45726782--45726868	27	3.2	27	84	9	115	35	22	22	18	1.95
45726974--45727047	26	2.8	26	85	4	85	31	10	22	35	1.89
45728490--45728597	26	4.2	26	93	0	189	36	24	7	32	1.83
45736415--45736507	33	2.8	34	79	12	122	33	23	10	32	1.89
45738136--45738162	10	2.7	10	100	0	54	37	0	33	29	1.58
45739817--45739863	23	2.1	22	84	4	58	12	4	2	80	0.94
45743361--45743440	38	2.1	38	95	0	142	32	13	3	50	1.60
45748727--45748758	16	2.1	16	88	11	50	59	18	0	21	1.38
45748810--45748856	21	2.2	21	85	7	60	65	8	2	23	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45749850--45749876	11	2.5	11	100	0	54	66	0	0	33	0.92
45753275--45753521	41	6.0	41	86	0	316	34	23	23	19	1.97
45753743--45753806	7	9.0	7	77	3	56	23	3	26	46	1.67
45753759--45753809	15	3.5	15	81	2	59	21	1	29	47	1.62
45754409--45754461	8	7.0	8	79	12	58	67	1	0	30	1.01
45754404--45754450	14	3.4	14	90	0	76	74	0	0	25	0.82
45754403--45754463	7	8.3	7	80	10	68	72	1	0	26	0.94
45755698--45755730	17	1.9	17	93	0	57	33	9	24	33	1.87
45757165--45757202	18	2.2	18	85	4	51	26	0	2	71	1.00
45757302--45757355	28	2.0	28	85	3	74	27	3	3	64	1.27
45757673--45757721	21	2.4	21	82	3	55	10	8	4	77	1.10
45770903--45770945	18	2.4	18	80	0	50	25	6	9	58	1.54
45771175--45771233	3	20.0	3	75	3	57	30	8	0	61	1.26
45773173--45773231	27	2.1	29	90	6	95	61	0	0	38	0.96
45773424--45773476	26	2.0	26	100	0	106	33	3	18	43	1.68
45776807--45776881	24	3.0	25	76	9	82	44	1	2	52	1.23
45776863--45776902	20	2.0	20	85	14	55	47	0	0	52	1.00
45776870--45776911	20	2.2	20	83	12	52	47	2	0	50	1.14
45777006--45777048	18	2.4	18	85	11	54	34	0	0	65	0.93
45777077--45777166	30	3.0	29	78	16	78	42	0	1	56	1.06
45777117--45777166	12	3.7	13	76	23	50	48	0	0	52	1.00
45780425--45780525	30	3.4	30	78	12	100	28	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45782750--45782790	17	2.4	17	91	0	64	41	7	0	51	1.30
45782886--45783029	71	2.0	71	90	0	225	43	3	3	49	1.36
45783128--45783166	17	2.3	17	86	0	51	46	5	5	43	1.48
45783168--45783206	19	2.0	20	85	5	53	38	5	0	56	1.22
45787716--45787792	3	25.7	3	70	10	50	59	5	6	28	1.44
45788824--45788861	7	5.4	7	100	0	76	57	28	13	0	1.36
45789653--45789964	44	7.2	44	68	11	230	16	24	23	35	1.95
45789624--45789962	87	3.9	87	94	0	579	17	23	23	35	1.95
45789607--45789941	43	7.7	43	69	11	225	18	22	23	35	1.96
45794875--45794990	53	2.2	54	81	7	130	27	28	22	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259