genome.fa.s9.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  185  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59716642--59716692	20	2.5	21	81	15	63	35	0	1	62	1.06
59718791--59718834	16	2.6	17	82	13	56	18	6	4	70	1.27
59724753--59724789	18	2.0	19	89	5	58	21	8	5	64	1.40
59724752--59724789	19	2.0	19	90	10	60	21	7	5	65	1.38
59725522--59725598	31	2.5	31	81	6	86	45	10	6	37	1.64
59725576--59725643	31	2.3	29	81	18	88	47	16	4	32	1.66
59736916--59736969	27	2.0	27	100	0	108	29	0	18	51	1.46
59740061--59740119	31	1.9	30	82	3	73	27	13	16	42	1.86
59744850--59744952	51	2.0	51	88	0	152	37	13	19	29	1.90
59748376--59748453	31	2.5	31	81	6	88	23	15	29	32	1.95
59750465--59750764	163	1.8	165	85	4	428	27	11	21	40	1.87
59756065--59756140	39	1.9	40	97	2	145	51	7	18	22	1.72
59759484--59759517	11	2.8	12	91	8	52	32	2	0	64	1.08
59762311--59762362	26	2.0	26	100	0	104	34	19	11	34	1.88
59763781--59763850	35	2.0	35	100	0	140	28	5	2	62	1.32
59768629--59768671	21	2.0	21	100	0	86	41	13	9	34	1.77
59770379--59770408	14	2.1	14	93	0	51	36	20	13	30	1.90
59771891--59771945	24	2.3	24	84	6	67	29	3	5	61	1.35
59774684--59774748	34	1.9	33	84	9	87	36	9	12	41	1.75
59774826--59774878	20	2.4	23	79	20	69	43	3	0	52	1.19
59778085--59778180	16	5.9	16	73	4	84	33	34	9	22	1.87
59789122--59789169	24	2.0	24	100	0	96	45	4	20	29	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59792849--59793001	24	6.4	23	71	15	80	34	22	24	17	1.96
59793156--59793202	24	1.9	24	82	4	58	36	19	27	17	1.93
59796382--59796484	45	2.3	45	82	0	134	44	16	16	22	1.86
59796371--59796490	45	2.5	51	73	16	126	45	15	16	22	1.85
59796468--59796499	6	5.3	6	100	0	64	50	15	15	18	1.79
59799341--59799510	46	3.7	46	77	13	195	22	20	27	28	1.99
59799335--59799505	93	1.8	93	93	0	297	22	21	28	28	1.99
59800241--59800271	14	2.2	14	100	0	62	45	0	22	32	1.53
59803344--59803441	23	4.3	23	86	2	144	33	25	20	20	1.97
59803351--59803439	45	2.0	45	90	0	142	33	25	21	19	1.97
59806597--59806650	23	2.3	23	93	3	90	38	22	0	38	1.54
59809742--59809810	24	2.9	24	74	6	70	50	2	0	46	1.16
59809900--59809937	20	1.9	20	88	0	58	50	5	0	44	1.24
59810256--59810303	20	2.4	20	74	22	55	39	18	4	37	1.70
59811611--59811748	69	2.0	69	100	0	276	30	24	17	27	1.97
59812652--59812691	14	2.9	14	88	0	62	40	0	2	57	1.12
59812886--59812955	23	3.2	23	62	25	60	40	7	22	30	1.81
59817311--59818099	222	3.5	220	78	8	722	21	14	17	46	1.83
59820423--59820466	18	2.4	19	81	11	56	36	0	4	59	1.18
59820836--59820883	25	2.0	23	84	11	62	52	12	0	35	1.40
59831179--59831260	40	2.0	40	97	0	155	21	10	14	52	1.72
59834290--59834346	27	2.1	28	81	12	66	43	1	8	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59836631--59836655	3	8.3	3	100	0	50	32	0	0	68	0.90
59844879--59844908	15	2.0	15	93	0	51	40	6	10	43	1.64
59847672--59847735	33	1.9	33	93	0	110	18	15	12	53	1.73
59848189--59848236	21	2.2	22	85	10	64	47	2	2	47	1.25
59852401--59852462	3	20.0	3	77	6	61	32	1	6	59	1.32
59852404--59852465	23	2.8	22	87	4	81	32	1	8	58	1.37
59852399--59852473	23	3.2	23	80	10	64	32	2	9	56	1.45
59852792--59852851	19	3.4	16	77	20	57	38	3	0	58	1.15
59852791--59852925	63	2.2	63	78	14	147	36	6	2	54	1.39
59858618--59858841	113	2.0	111	98	1	430	33	12	15	39	1.84
59859134--59859227	25	3.7	25	67	18	59	35	7	7	50	1.59
59859146--59859251	51	2.1	51	98	0	203	37	4	9	48	1.57
59859418--59859484	34	1.9	35	87	3	100	46	8	8	35	1.67
59859807--59859840	2	17.0	2	93	0	59	47	0	0	52	1.00
59862572--59862632	31	2.0	31	83	0	77	40	3	11	44	1.57
59862759--59862832	29	2.4	30	77	8	78	51	12	1	35	1.48
59865382--59865428	21	2.2	21	88	0	67	27	10	10	51	1.70
59873447--59873505	31	1.9	31	82	0	73	37	10	10	42	1.73
59877922--59878004	38	2.3	36	81	6	96	61	2	1	34	1.17
59880695--59880917	44	5.1	44	66	16	138	26	27	21	24	1.99
59880582--59880979	88	4.6	88	86	2	518	28	24	21	25	1.99
59882874--59882916	18	2.6	16	81	7	50	11	13	4	69	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59882976--59883190	21	9.8	21	65	21	68	25	8	3	62	1.39
59883060--59883193	3	45.7	3	72	16	86	28	7	0	63	1.26
59883063--59883092	16	1.9	15	93	6	51	23	0	0	76	0.78
59883060--59883193	14	9.4	14	69	16	71	28	7	0	63	1.26
59883102--59883185	23	3.8	23	79	4	84	30	8	1	59	1.34
59883066--59883163	20	4.9	20	75	12	76	29	7	1	62	1.29
59883337--59883432	28	3.6	26	74	13	79	32	5	4	58	1.39
59885619--59885648	15	2.0	15	93	0	51	20	0	3	76	0.92
59885864--59885907	18	2.4	19	81	7	56	43	0	0	56	0.99
59885903--59885956	6	9.5	6	76	11	60	35	1	0	62	1.06
59886137--59886184	19	2.6	19	80	12	55	75	2	10	12	1.14
59888707--59888760	24	2.2	24	87	6	74	12	27	20	38	1.89
59889215--59889257	20	2.0	21	82	8	52	37	0	0	62	0.95
59895387--59895624	43	5.4	42	80	8	224	26	28	19	25	1.99
59895407--59895505	49	2.0	49	90	0	153	22	29	21	27	1.99
59895387--59895624	86	2.7	88	80	5	284	26	28	19	25	1.99
59895757--59895803	19	2.5	19	76	10	51	72	4	2	21	1.12
59898607--59898724	46	2.6	46	91	0	191	23	30	11	34	1.90
59898734--59899211	47	10.2	47	89	2	694	23	28	13	35	1.92
59898788--59898909	22	5.3	22	64	24	72	22	28	13	34	1.93
59898976--59899051	22	3.3	22	65	28	59	22	30	14	32	1.94
59899023--59899098	22	3.3	22	68	22	66	26	28	11	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59901960--59901984	12	2.1	12	100	0	50	52	16	0	32	1.44
59904841--59904873	17	1.9	17	93	0	57	57	9	27	6	1.53
59905245--59905305	7	8.7	7	92	0	104	29	0	0	70	0.88
59905618--59905748	37	3.5	37	87	4	201	21	16	50	12	1.77
59905840--59905884	23	2.0	23	81	0	54	51	28	0	20	1.48
59906020--59906146	48	2.7	46	83	7	166	19	0	29	50	1.48
59906151--59906409	41	6.4	41	91	2	416	20	22	22	35	1.96
59906151--59906409	81	3.2	82	91	2	416	20	22	22	35	1.96
59906151--59906409	122	2.1	122	92	1	430	20	22	22	35	1.96
59906151--59906439	122	2.4	121	84	6	361	20	21	21	35	1.96
59907072--59907101	13	2.4	13	94	5	53	0	16	0	83	0.65
59908857--59909321	131	3.6	130	82	6	543	26	17	20	35	1.95
59920911--59921255	45	7.6	45	69	12	211	34	18	19	27	1.95
59920906--59921345	137	3.2	137	88	1	648	34	19	18	27	1.95
59923718--59924181	131	3.6	131	85	4	613	25	18	20	35	1.95
59930774--59930892	60	2.0	60	93	0	202	54	12	0	32	1.38
59931060--59931107	3	16.3	3	85	8	55	0	31	0	68	0.90
59931066--59931134	19	3.7	19	75	18	56	0	34	0	65	0.93
59939917--59940085	43	4.0	42	75	13	157	34	23	15	26	1.94
59939917--59940078	85	1.9	85	85	7	222	34	23	16	25	1.95
59942254--59942356	18	5.4	18	70	13	80	36	23	25	14	1.93
59942274--59942338	19	3.2	21	72	12	73	40	20	26	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59942256--59942356	39	2.6	39	96	0	184	37	22	25	13	1.92
59943574--59943608	16	2.1	18	89	10	56	37	14	2	45	1.59
59945426--59945492	18	3.6	18	75	11	62	37	23	22	16	1.94
59947520--59947559	20	2.0	20	100	0	80	40	15	0	45	1.46
59949740--59950020	40	7.0	40	94	0	472	19	23	30	26	1.98
59950012--59950108	43	2.3	43	83	0	122	15	21	30	31	1.94
59950227--59950281	25	2.2	25	90	6	85	29	12	30	27	1.93
59950265--59950363	28	3.5	28	72	5	101	20	17	30	32	1.95
59950264--59950390	56	2.3	56	97	0	245	18	17	33	30	1.94
59950293--59950388	28	3.4	28	72	5	104	17	15	35	31	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259