genome.fa.s9.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  110  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35461750--35462011	46	5.6	45	75	12	210	22	29	19	29	1.98
35461843--35462014	94	1.8	92	86	7	249	22	30	19	27	1.98
35466663--35466791	47	2.6	49	79	9	145	34	23	17	24	1.96
35468838--35468887	17	2.9	17	84	0	55	38	8	16	38	1.78
35470518--35470586	31	2.3	31	85	5	88	47	5	5	40	1.51
35477926--35478060	69	1.9	71	83	5	177	29	9	17	42	1.81
35482600--35483001	45	8.9	45	87	0	563	29	28	19	22	1.98
35487140--35487212	29	2.5	29	82	6	85	28	28	13	28	1.94
35487034--35487362	174	1.9	174	96	0	604	31	24	13	29	1.94
35487321--35487392	29	2.5	29	86	0	99	30	31	12	25	1.92
35491829--35491870	20	2.1	20	100	0	84	11	38	9	40	1.75
35495236--35495303	29	2.3	29	80	5	75	27	27	13	30	1.94
35495125--35495451	174	1.9	174	96	0	600	31	24	13	29	1.94
35495412--35495483	29	2.5	29	86	0	99	30	31	12	25	1.92
35507653--35507876	91	2.5	93	83	4	287	40	15	10	33	1.82
35509043--35509243	99	2.0	99	96	0	366	40	14	21	23	1.90
35512049--35512144	27	3.6	27	94	0	156	23	25	28	22	2.00
35512221--35512258	9	4.2	9	83	12	51	73	0	26	0	0.83
35512221--35512258	18	2.1	19	95	5	69	73	0	26	0	0.83
35515100--35515255	64	2.5	64	93	2	262	41	6	7	44	1.58
35515674--35515780	33	3.2	33	73	5	108	23	15	40	20	1.91
35517825--35518048	110	2.0	112	87	3	328	55	7	4	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35518159--35518194	17	2.1	17	89	0	54	69	2	2	25	1.15
35518843--35518899	27	2.1	27	87	6	80	10	52	21	15	1.72
35532330--35532434	46	2.3	44	84	9	124	24	29	20	25	1.99
35532876--35533656	399	2.0	394	86	5	1103	28	22	17	31	1.97
35534622--35534798	27	6.5	27	83	3	176	29	27	15	27	1.96
35534647--35534797	82	1.9	81	88	4	232	28	27	16	27	1.97
35540349--35540393	23	2.0	23	95	0	81	33	13	33	20	1.91
35540350--35540401	23	2.3	23	89	0	77	32	19	28	19	1.96
35541847--35542012	43	3.9	42	75	10	140	33	24	17	24	1.96
35547293--35547403	55	2.0	55	96	0	204	27	26	13	32	1.94
35556248--35556773	45	11.8	45	71	7	268	31	18	22	27	1.97
35556252--35556803	179	3.1	176	79	4	484	31	18	21	28	1.97
35556294--35556646	134	2.6	133	74	7	345	30	17	23	27	1.97
35556294--35556850	89	6.2	88	72	8	293	31	19	21	28	1.97
35556559--35556892	179	1.9	179	86	2	483	31	21	18	28	1.97
35557770--35557949	3	60.3	3	75	7	134	28	6	3	61	1.39
35558036--35558096	20	3.1	19	81	9	68	21	8	1	68	1.24
35558086--35558124	15	2.7	15	84	15	55	28	15	0	56	1.40
35562695--35562758	31	2.1	31	87	0	92	25	21	15	37	1.93
35562972--35563117	24	6.2	24	87	3	215	26	19	23	30	1.98
35562972--35563117	71	2.1	71	92	0	238	26	19	23	30	1.98
35562972--35563117	47	3.1	48	88	3	215	26	19	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35563167--35563213	20	2.3	20	96	0	85	34	21	10	34	1.88
35572877--35573008	29	4.6	29	91	1	194	25	33	17	24	1.96
35580781--35580846	29	2.3	29	86	5	89	25	33	15	25	1.95
35583213--35583276	31	2.1	31	87	0	92	25	21	15	37	1.93
35583489--35583635	24	6.2	24	84	3	172	27	20	21	29	1.98
35583491--35583634	47	3.1	47	80	6	166	28	20	22	29	1.98
35583683--35583740	11	5.6	11	68	15	52	32	17	12	37	1.86
35583683--35583751	20	3.5	20	89	0	111	33	18	11	36	1.87
35591992--35592163	93	1.8	93	93	0	299	28	29	20	21	1.98
35591985--35592160	46	3.8	46	77	12	198	29	28	20	21	1.98
35600102--35600158	30	1.9	30	85	0	78	28	21	7	43	1.78
35618297--35618568	27	10.3	27	84	5	308	45	20	15	18	1.86
35618289--35618568	132	2.1	131	83	6	359	45	21	15	18	1.85
35618944--35618986	18	2.4	18	100	0	86	23	27	16	32	1.96
35621760--35622087	27	12.2	27	88	0	442	42	21	17	18	1.89
35626834--35626988	42	3.7	41	82	6	195	28	25	17	29	1.97
35626834--35626998	84	2.0	84	84	2	215	29	24	16	29	1.96
35633875--35634191	47	6.8	46	74	14	244	25	30	18	25	1.98
35633879--35634191	145	2.2	144	81	10	346	25	30	17	25	1.97
35642906--35642986	6	13.8	6	92	3	87	18	7	0	74	1.05
35642902--35642997	12	8.0	12	87	2	95	18	6	1	73	1.09
35645029--35645068	13	3.1	13	88	0	62	15	32	37	15	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35655549--35655732	78	2.3	82	84	8	238	25	27	22	23	2.00
35655530--35655732	40	5.1	40	83	9	238	25	27	22	24	2.00
35663630--35663814	79	2.3	82	84	7	238	25	28	21	24	1.99
35663611--35663814	40	5.1	40	82	8	238	25	27	21	25	1.99
35670320--35670846	47	11.1	47	92	2	820	30	9	31	27	1.89
35670669--35670747	25	3.3	25	61	10	65	32	5	29	32	1.79
35670320--35670846	192	2.8	190	92	1	869	30	9	31	27	1.89
35672617--35672928	40	7.8	40	92	0	498	25	28	21	23	1.99
35674394--35674472	25	3.3	25	66	16	76	31	29	5	34	1.79
35674346--35674494	47	3.2	47	91	0	199	27	30	9	32	1.88
35674466--35674515	21	2.3	22	96	3	93	26	30	16	28	1.96
35674419--35674562	68	2.1	68	97	1	270	27	29	11	31	1.91
35674488--35674579	47	2.0	46	97	2	175	30	28	8	32	1.87
35690992--35691032	18	2.2	19	91	4	66	48	0	0	51	1.00
35697421--35697470	26	1.9	25	84	15	66	38	4	26	32	1.75
35697970--35698084	42	2.7	42	76	5	117	27	13	26	32	1.93
35706042--35706183	47	3.0	47	93	1	241	28	12	14	44	1.81
35711211--35711475	40	6.7	40	89	4	367	26	26	21	24	1.99
35711211--35711475	119	2.2	122	88	5	398	26	26	21	24	1.99
35729757--35729805	21	2.3	21	78	0	62	34	28	18	18	1.94
35729837--35729955	42	2.8	41	79	12	125	30	26	18	25	1.98
35729837--35730010	43	4.1	41	75	12	129	34	25	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35737841--35737909	11	6.8	11	75	15	69	36	7	20	36	1.80
35737842--35737918	20	3.8	20	91	0	127	36	9	19	35	1.84
35737854--35737909	9	5.8	9	76	15	58	35	5	21	37	1.76
35743152--35743281	28	4.6	28	87	2	170	29	12	24	33	1.92
35743152--35743281	57	2.3	57	87	2	181	29	12	24	33	1.92
35747969--35748115	40	3.7	40	87	7	176	27	21	25	25	1.99
35748336--35748547	47	4.5	47	91	0	325	31	9	31	27	1.88
35748666--35748744	37	2.1	37	86	4	106	26	18	29	25	1.98
35750106--35750372	27	9.9	27	87	1	367	23	22	20	33	1.97
35750123--35750516	54	7.3	54	81	7	203	26	16	20	36	1.94
35750106--35750435	81	4.1	81	82	5	265	26	19	19	34	1.96
35750366--35750544	27	6.6	27	84	0	223	31	7	20	40	1.81
35750366--35750544	54	3.3	54	91	0	286	31	7	20	40	1.81
35753753--35753830	11	7.6	11	73	16	78	35	8	20	34	1.84
35753754--35753830	20	3.8	20	92	0	136	35	9	20	35	1.85
35753766--35753822	9	5.9	9	76	15	60	35	5	22	36	1.77
35753880--35753952	26	2.8	26	100	0	146	27	26	23	23	2.00
35756708--35756814	51	2.1	51	87	5	153	42	7	21	28	1.80
35774417--35774454	15	2.4	16	91	8	60	47	21	2	28	1.64
35782538--35782651	44	2.7	41	75	9	111	34	27	16	21	1.95
35782487--35782651	86	1.9	85	81	8	201	32	25	16	24	1.96
35783021--35783045	8	3.1	8	100	0	50	24	24	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791210--35791522	47	6.6	47	90	3	475	30	12	30	26	1.93
35791496--35791632	46	3.0	46	89	0	202	34	8	31	25	1.86
35791813--35791923	37	3.0	37	91	0	177	24	18	28	27	1.98
35792799--35792912	27	4.2	27	83	8	135	35	21	22	19	1.96
35794252--35794318	33	2.0	33	100	0	134	28	29	17	23	1.97
35799213--35799265	20	2.5	21	81	6	63	37	20	18	22	1.94
35801275--35801458	27	6.9	27	90	3	214	32	10	17	39	1.84
35808919--35808969	25	2.0	25	100	0	102	23	23	9	43	1.83
35813122--35813146	7	3.6	7	100	0	50	32	0	40	28	1.57
35815441--35815479	2	19.5	2	100	0	78	0	0	51	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259