genome.fa.s9.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  192  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61522525--61522663	58	2.4	57	84	2	179	53	4	0	41	1.20
61525720--61525770	23	2.2	23	86	6	68	11	27	13	47	1.78
61529929--61529974	21	2.2	21	100	0	92	19	19	15	45	1.85
61533811--61533899	17	5.1	17	67	17	56	33	3	2	60	1.25
61533888--61533920	17	1.9	17	88	11	50	36	0	9	54	1.32
61542273--61542422	27	5.5	27	77	4	133	26	16	28	28	1.97
61542272--61542422	54	2.8	55	77	9	150	26	16	28	28	1.97
61547622--61547706	20	4.1	21	77	19	63	43	0	1	55	1.07
61547661--61547698	5	7.6	5	100	0	76	39	0	0	60	0.97
61548395--61548435	14	3.0	13	89	10	64	36	2	21	39	1.67
61548790--61548814	12	2.1	12	100	0	50	16	24	20	40	1.91
61548837--61548867	6	5.2	6	92	0	53	16	19	16	48	1.81
61549649--61549709	13	4.5	14	76	21	67	75	0	0	24	0.80
61549652--61549706	5	10.4	5	98	2	83	76	0	0	23	0.79
61551057--61551092	18	2.1	17	89	5	54	69	0	0	30	0.89
61551057--61551092	17	2.1	17	94	0	63	69	0	0	30	0.89
61551115--61551159	20	2.2	20	84	7	56	64	8	0	26	1.23
61551845--61551884	19	2.1	19	86	9	55	32	0	2	65	1.06
61571032--61571155	32	3.9	32	95	0	221	44	16	14	25	1.85
61575752--61575792	21	2.0	21	85	9	57	41	0	7	51	1.30
61581922--61582029	26	4.2	26	93	0	189	36	24	7	32	1.83
61589325--61589513	87	2.2	88	89	0	281	30	8	15	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61598015--61598073	31	1.9	31	86	6	84	38	1	5	54	1.33
61603663--61603756	33	2.8	33	80	1	116	38	14	25	21	1.92
61605244--61605417	46	3.8	46	74	12	158	28	27	21	22	1.99
61605253--61605422	93	1.8	93	87	2	252	27	26	22	23	1.99
61610407--61610447	21	2.0	21	100	0	82	53	4	26	14	1.61
61613497--61613547	26	2.0	26	88	0	75	43	1	5	49	1.38
61616848--61616888	4	10.2	4	94	0	73	24	0	21	53	1.46
61619852--61619927	30	2.5	30	80	4	82	34	18	15	31	1.92
61622538--61622639	22	4.5	22	70	16	73	26	23	15	34	1.95
61622527--61622680	69	2.2	69	81	2	193	25	21	16	36	1.94
61625249--61625274	10	2.6	10	100	0	52	19	42	7	30	1.79
61627799--61627844	24	1.9	24	90	0	74	47	4	4	43	1.42
61628377--61628401	2	12.5	2	100	0	50	48	0	0	52	1.00
61629181--61629234	27	2.0	27	100	0	108	37	33	7	22	1.82
61631474--61631534	21	2.7	23	80	12	72	36	3	9	50	1.52
61641920--61642010	3	30.7	3	78	10	89	27	5	0	67	1.13
61646685--61646745	21	2.9	21	78	7	70	37	4	0	57	1.20
61648409--61648462	16	3.4	17	73	17	53	16	25	1	55	1.51
61650085--61650132	3	16.0	3	95	0	87	64	0	2	33	1.05
61653327--61653370	19	2.2	20	88	4	63	27	11	11	50	1.72
61678464--61678543	38	2.1	38	92	0	133	45	26	6	22	1.76
61679958--61680028	36	1.9	37	82	5	90	26	8	8	56	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61679934--61680001	20	3.3	21	76	15	54	30	5	7	55	1.51
61683291--61683418	6	21.8	6	95	4	235	50	15	0	34	1.45
61684187--61684229	16	2.7	16	82	10	52	55	2	0	41	1.12
61684694--61684740	18	2.6	18	86	3	58	74	4	8	12	1.19
61688294--61688318	2	12.5	2	100	0	50	48	0	0	52	1.00
61696947--61696984	16	2.4	16	86	4	51	5	7	21	65	1.38
61701881--61701941	31	2.0	31	86	0	86	34	11	6	47	1.66
61708483--61708600	58	2.0	58	98	0	227	55	4	5	34	1.41
61719692--61719735	21	2.1	21	83	8	54	4	18	0	77	0.94
61723383--61723438	26	2.2	26	100	0	112	35	26	7	30	1.83
61728759--61729397	131	4.9	130	74	5	432	27	18	18	35	1.94
61732598--61732683	42	2.0	42	100	0	172	37	11	13	37	1.82
61733996--61734169	87	2.0	87	97	0	330	40	24	21	13	1.89
61740073--61740121	3	16.3	3	95	0	89	69	0	30	0	0.89
61741007--61741282	133	2.1	133	82	4	342	26	21	26	26	1.99
61753730--61753799	4	18.0	4	82	5	54	14	4	5	75	1.14
61753751--61753794	19	2.3	19	84	0	52	18	6	0	75	1.02
61753849--61753890	18	2.3	18	80	8	50	23	4	0	71	1.05
61753865--61753904	21	1.9	21	85	10	55	22	5	2	70	1.19
61757660--61757694	18	1.9	18	88	0	52	40	11	17	31	1.85
61757667--61757710	18	2.5	17	85	7	52	38	15	13	31	1.87
61763349--61763525	44	3.9	44	79	6	167	35	15	19	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61763444--61763900	145	3.2	146	90	2	699	31	17	20	30	1.95
61763867--61763986	45	2.7	45	85	1	161	30	17	23	29	1.97
61765496--61765558	4	16.0	4	80	3	65	19	4	3	73	1.15
61765609--61765650	18	2.3	18	80	8	50	23	4	0	71	1.05
61771593--61771643	25	2.0	26	84	3	68	21	3	5	68	1.27
61772731--61772765	17	1.9	19	88	11	56	20	2	20	57	1.54
61782187--61782239	18	2.9	18	77	5	63	32	26	16	24	1.97
61789481--61789572	43	2.1	45	82	8	109	31	14	27	27	1.95
61789380--61790003	176	3.5	175	81	9	678	31	18	24	26	1.98
61791431--61791481	25	2.0	26	84	3	68	21	3	3	70	1.20
61801214--61801435	48	4.6	48	79	4	241	27	20	29	22	1.98
61801214--61801435	96	2.3	96	83	4	270	27	20	29	22	1.98
61809482--61809539	12	5.1	12	78	17	52	32	1	5	60	1.29
61809509--61809549	12	3.4	12	84	15	50	26	0	9	63	1.25
61810844--61810868	13	1.9	13	100	0	50	84	0	16	0	0.63
61811529--61811560	7	4.6	7	96	0	55	81	0	0	18	0.70
61812346--61812379	16	2.1	16	88	0	50	41	0	2	55	1.15
61813796--61813844	23	2.1	23	81	7	55	36	6	0	57	1.24
61815093--61815122	11	2.7	11	94	0	51	63	16	16	3	1.44
61816021--61816052	3	10.7	3	100	0	64	31	0	0	68	0.90
61816161--61816205	18	2.7	16	83	16	56	33	2	0	64	1.06
61816573--61816623	20	2.5	20	78	12	59	23	11	3	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61822758--61822797	20	2.0	20	95	0	71	42	15	12	30	1.83
61823201--61823288	44	2.0	44	84	4	115	29	11	28	30	1.92
61823297--61823480	44	4.2	44	68	12	126	30	20	21	27	1.98
61823288--61823769	131	3.7	131	88	1	705	29	20	22	26	1.99
61823762--61823936	88	2.0	88	89	0	269	33	19	23	23	1.97
61823774--61823970	88	2.2	88	80	0	223	35	20	19	24	1.96
61824114--61824647	44	12.0	44	68	10	226	31	18	22	28	1.97
61824219--61824420	89	2.3	90	83	2	246	33	18	22	25	1.96
61824270--61824413	45	3.2	45	68	8	114	35	17	20	27	1.94
61824308--61824595	133	2.2	134	82	1	337	28	18	24	28	1.98
61824308--61824631	133	2.4	133	80	4	321	29	17	24	29	1.97
61826739--61826767	14	2.0	15	93	6	51	24	0	0	75	0.80
61828146--61828295	53	2.8	53	92	1	255	36	15	12	36	1.84
61830114--61830141	14	2.0	14	100	0	56	50	14	7	28	1.69
61831520--61831616	43	2.3	43	89	1	142	34	25	14	25	1.94
61831481--61831625	43	3.4	43	81	4	134	33	25	14	26	1.94
61833816--61833890	33	2.3	33	81	9	82	25	20	18	36	1.95
61836472--61836496	10	2.5	10	100	0	50	48	8	16	28	1.74
61840786--61840817	15	2.1	15	100	0	64	31	15	34	18	1.93
61848767--61848811	20	2.3	20	80	3	56	42	8	11	37	1.72
61857351--61857453	27	3.8	28	80	12	99	17	22	21	38	1.93
61857351--61857462	54	2.1	54	84	3	145	16	22	21	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61865207--61865313	27	3.9	27	77	9	110	16	23	20	39	1.92
61871385--61871573	55	3.5	53	81	5	209	23	23	18	34	1.96
61871774--61871857	44	1.9	44	83	9	109	26	22	11	39	1.89
61887516--61887692	40	4.4	40	79	9	166	25	20	25	28	1.99
61895821--61895850	15	2.0	15	100	0	60	53	6	13	26	1.64
61898129--61898262	40	3.4	41	69	13	118	29	16	23	30	1.96
61903428--61903469	17	2.5	17	88	0	66	26	4	7	61	1.42
61907077--61907107	7	4.4	7	95	0	53	67	0	0	32	0.91
61909029--61909131	37	2.8	37	96	0	188	24	32	20	23	1.98
61909272--61909458	48	3.9	48	98	0	356	30	29	6	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259