genome.fa.s9.2.7.7.80.10.50.1000.204.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Length:  81831061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   

This is table  204  of  259  ( 31025 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64903713--64903769	28	2.1	27	87	9	80	33	0	3	63	1.12
64905227--64905316	31	2.9	32	86	5	130	27	0	15	56	1.40
64905611--64905660	25	2.0	25	100	0	100	32	32	4	32	1.76
64908918--64908954	18	1.9	19	89	10	58	32	2	2	62	1.23
64911161--64911195	3	11.7	3	100	0	70	31	0	0	68	0.90
64920523--64920567	23	2.0	23	86	8	65	53	2	2	42	1.25
64921819--64921872	27	2.0	28	85	7	76	35	9	3	51	1.52
64922500--64922525	12	2.2	12	100	0	52	7	15	30	46	1.74
64922514--64922636	40	3.1	40	79	6	126	35	19	21	23	1.96
64922701--64922944	41	6.0	41	92	0	389	20	23	28	27	1.99
64923628--64923687	14	4.3	14	79	8	59	25	0	43	31	1.55
64923628--64923679	7	7.4	7	84	0	59	23	0	44	32	1.54
64923628--64923686	21	2.8	21	81	0	64	25	0	42	32	1.55
64927764--64927854	43	2.1	43	85	2	121	35	12	9	42	1.75
64928099--64928129	16	1.9	16	93	0	53	48	0	3	48	1.17
64928127--64928331	42	4.8	43	83	5	229	22	17	31	28	1.96
64928402--64928446	22	2.1	21	91	4	72	44	26	17	11	1.82
64928504--64928539	12	2.9	12	91	4	54	66	0	2	30	1.06
64929072--64929109	18	2.1	18	90	9	60	39	13	0	47	1.42
64929565--64929609	20	2.3	20	84	3	56	57	2	4	35	1.31
64930323--64930502	89	2.0	89	89	0	270	41	18	13	26	1.87
64937421--64937542	46	2.6	46	85	7	149	22	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64937411--64937599	46	4.0	45	76	8	148	23	28	17	30	1.97
64943655--64943848	51	3.8	50	80	4	167	25	19	24	30	1.98
64943706--64943856	51	3.0	51	83	0	178	25	20	24	29	1.99
64947746--64947813	30	2.3	30	84	5	84	47	5	19	27	1.72
64950012--64950239	46	5.0	46	89	1	296	39	14	23	22	1.91
64955815--64955852	2	19.0	2	100	0	76	0	50	0	50	1.00
64958717--64958760	20	2.3	19	80	4	52	43	0	2	54	1.12
64959035--64959092	29	2.0	29	83	6	73	34	13	6	44	1.71
64959638--64959685	20	2.3	21	86	13	73	64	10	0	25	1.25
64960396--64960438	8	5.2	8	77	5	50	60	0	0	39	0.97
64960389--64960517	29	4.2	31	70	23	101	55	0	0	44	1.05
64960457--64960512	24	2.1	28	87	12	84	51	0	0	48	1.00
64960555--64960612	26	2.3	25	80	14	66	31	32	6	29	1.84
64981040--64981072	1	33.0	1	100	0	66	100	0	0	0	0.00
64982004--64982795	132	6.0	132	98	0	1449	27	16	26	30	1.97
64982755--64982841	44	1.9	44	83	4	111	26	16	26	31	1.96
64986306--64986433	46	2.8	46	90	1	204	41	10	24	23	1.86
64986415--64986449	15	2.2	16	90	5	54	37	11	28	22	1.89
64986358--64986485	61	2.1	61	95	1	229	40	10	24	24	1.87
64986420--64986778	46	7.8	46	87	2	454	42	13	23	20	1.88
64986317--64986541	107	2.1	107	94	0	387	40	12	23	23	1.89
64986424--64986763	138	2.5	137	89	1	509	42	13	23	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64992617--64992670	19	2.8	20	86	5	67	27	16	5	50	1.68
64992794--64992840	24	2.0	24	87	8	69	55	14	21	8	1.66
64992987--64993144	83	1.9	82	93	1	271	28	35	17	18	1.94
65002083--65002494	133	3.1	132	86	2	549	30	21	24	23	1.99
65002191--65002382	45	4.3	45	71	7	149	31	18	26	23	1.98
65002083--65002578	266	1.9	264	80	2	582	32	20	23	23	1.98
65002672--65002782	44	2.5	44	84	7	136	27	23	19	28	1.98
65006023--65006151	50	2.5	51	87	5	181	36	15	21	26	1.93
65006127--65006275	31	4.8	31	89	0	217	29	20	24	25	1.99
65010188--65010853	26	26.7	24	68	17	240	60	5	4	29	1.40
65010188--65010399	24	8.7	24	70	19	102	60	6	4	28	1.41
65010686--65010765	23	3.4	24	74	6	65	62	5	3	28	1.33
65010747--65010859	53	2.1	53	83	6	140	62	3	2	30	1.25
65020877--65020928	11	4.5	11	83	9	68	34	0	1	63	1.06
65020874--65020937	11	5.6	11	83	7	65	32	0	1	65	1.02
65024064--65024271	46	4.5	46	89	1	283	40	13	24	21	1.89
65026023--65026277	48	5.6	42	85	7	228	30	27	14	28	1.95
65026076--65026429	48	7.2	49	84	6	366	31	27	14	26	1.95
65026267--65026410	47	2.8	52	76	14	154	30	26	14	28	1.95
65030019--65030063	22	2.1	21	84	12	56	51	24	2	22	1.60
65030137--65030206	27	2.6	27	77	4	70	40	24	7	28	1.81
65031436--65031499	28	2.3	28	86	0	83	39	3	7	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65032669--65032719	12	4.3	12	78	11	61	70	0	7	21	1.12
65032808--65032954	3	49.3	3	71	4	91	58	5	6	29	1.46
65035324--65035363	21	1.9	21	84	0	53	57	0	7	35	1.27
65037231--65037313	36	2.2	37	89	4	123	34	2	38	24	1.68
65038492--65038535	20	2.2	21	88	8	65	56	0	0	43	0.99
65038492--65038529	20	2.0	20	94	5	69	55	0	0	44	0.99
65038877--65038906	14	2.2	14	94	5	53	40	6	13	40	1.71
65039487--65039541	22	2.7	21	83	8	60	50	1	0	47	1.11
65039496--65039569	22	3.7	21	68	26	61	52	2	1	43	1.23
65041005--65041077	34	2.1	35	85	7	96	27	0	28	43	1.55
65041172--65041751	99	5.6	98	73	17	333	37	2	17	42	1.61
65041317--65041364	22	2.2	22	84	0	60	41	2	14	41	1.57
65041263--65041762	107	4.8	108	77	13	461	35	2	18	43	1.62
65041325--65041749	105	4.1	103	78	9	380	35	2	19	43	1.64
65041554--65041603	22	2.3	22	75	3	57	28	4	18	50	1.65
65041625--65041675	22	2.3	21	83	6	66	43	1	17	37	1.61
65041719--65041798	30	2.7	30	81	9	76	35	1	15	48	1.52
65041821--65042191	126	2.9	125	89	3	530	41	16	15	25	1.88
65047550--65047574	6	4.2	6	100	0	50	64	0	0	36	0.94
65048704--65048747	20	2.3	19	80	4	52	43	0	2	54	1.12
65049624--65049675	19	2.6	19	82	11	61	51	5	3	38	1.44
65050421--65050466	24	1.9	24	91	8	76	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65050505--65050562	26	2.3	25	80	14	66	31	32	6	29	1.84
65050925--65050973	25	2.0	24	88	4	71	40	4	0	55	1.19
65053227--65053288	28	2.2	28	76	0	70	51	4	1	41	1.33
65053513--65053581	18	3.9	16	75	16	57	17	7	1	73	1.12
65053564--65053611	14	3.4	14	77	11	53	16	2	4	77	1.03
65053664--65053693	15	2.0	15	100	0	60	33	0	0	66	0.92
65053702--65053734	14	2.3	15	94	5	59	42	0	0	57	0.98
65053958--65054000	19	2.2	19	84	12	52	53	0	4	41	1.21
65054058--65054107	20	2.5	19	80	6	64	60	0	4	36	1.16
65054538--65054614	40	1.9	40	91	0	127	38	6	2	51	1.41
65054625--65054690	32	2.1	32	100	0	132	53	3	9	34	1.48
65054889--65054926	17	2.2	17	95	0	67	60	0	0	39	0.97
65054981--65055019	17	2.2	17	90	9	60	53	5	2	38	1.37
65055029--65055100	33	2.1	35	87	7	105	61	1	0	37	1.05
65055056--65055099	20	2.1	22	87	8	65	59	0	0	40	0.98
65055056--65055132	23	3.5	22	74	8	59	54	2	0	42	1.14
65055141--65055181	19	2.2	18	87	12	57	80	2	0	17	0.82
65065387--65065442	24	2.4	24	79	8	62	62	3	8	25	1.41
65070500--65070621	58	2.1	60	81	6	142	29	17	6	46	1.73
65074689--65074780	19	4.9	18	73	13	71	63	1	1	34	1.09
65074700--65074778	9	8.6	9	77	10	54	63	0	1	35	1.03
65076113--65076164	24	2.1	26	89	7	81	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65076152--65076214	19	3.3	19	80	8	74	38	0	6	55	1.25
65076088--65076220	20	6.4	20	71	20	71	42	0	3	54	1.18
65080291--65081310	207	5.0	206	86	3	1279	32	15	13	38	1.87
65089751--65089826	37	2.0	39	87	5	111	43	3	3	48	1.40
65091907--65091959	23	2.3	23	83	0	61	13	22	9	54	1.67
65098566--65098984	131	3.2	132	77	8	329	26	20	19	33	1.97
65100894--65100967	26	2.9	26	83	2	87	33	16	10	39	1.83
65101111--65101144	12	2.8	12	86	0	50	14	23	0	61	1.33
65103289--65103335	21	2.3	20	81	3	58	44	0	8	46	1.33
65103798--65103892	25	3.9	24	74	10	86	20	27	21	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259