genome.fa.s25.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  104  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37337925--37338199	91	3.0	91	100	0	550	50	12	7	29	1.67
37351110--37351658	48	11.4	48	94	0	945	35	7	27	29	1.85
37351830--37351928	37	2.7	37	95	0	171	25	19	31	24	1.98
37356664--37356804	49	2.8	49	80	8	169	28	26	21	24	1.99
37362046--37362223	27	6.6	27	77	6	137	30	28	15	25	1.96
37362046--37362223	54	3.3	54	78	7	164	30	28	15	25	1.96
37366298--37366367	32	2.2	32	100	0	140	31	25	25	17	1.97
37370084--37370261	27	6.6	27	84	3	205	29	28	15	26	1.96
37370105--37370260	82	1.9	81	88	3	233	29	28	15	26	1.96
37386428--37386459	15	2.1	15	94	0	55	62	6	0	31	1.20
37391468--37391492	13	1.9	13	100	0	50	16	40	28	16	1.89
37397702--37397869	43	3.9	43	91	0	264	14	23	32	29	1.94
37398186--37398293	45	2.5	42	83	8	119	23	24	26	25	2.00
37405714--37405786	36	2.0	36	97	0	137	17	12	5	64	1.45
37414780--37414899	43	2.8	43	83	2	152	36	25	15	22	1.94
37414795--37414946	43	3.6	43	74	11	132	32	23	15	29	1.95
37414942--37415059	43	2.7	43	84	5	123	27	15	22	33	1.94
37415350--37415493	66	2.2	66	83	6	175	15	22	18	43	1.88
37421439--37421492	25	2.1	26	86	10	76	40	3	7	48	1.49
37421799--37421836	20	2.0	20	89	5	60	68	5	0	26	1.11
37421794--37421837	19	2.3	18	81	11	52	65	4	0	29	1.12
37424189--37424372	67	2.8	64	77	8	194	29	16	30	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37428379--37428474	41	2.4	41	87	5	142	22	18	25	33	1.97
37430561--37430713	42	3.6	42	79	4	137	28	17	25	28	1.98
37436642--37436680	19	2.2	17	86	9	51	35	0	0	64	0.94
37438601--37438638	17	2.1	19	85	14	53	68	0	7	23	1.16
37439903--37440009	24	4.5	23	77	10	99	18	10	33	37	1.85
37441088--37441244	43	3.6	44	74	9	135	33	26	15	25	1.95
37449180--37449214	16	2.2	16	90	5	54	42	17	0	40	1.49
37457426--37457916	150	3.3	150	93	3	816	36	6	25	31	1.82
37457426--37457910	48	9.8	49	88	5	674	36	6	25	31	1.82
37458063--37458171	37	2.9	37	91	0	173	23	18	30	27	1.98
37461831--37462002	46	3.7	46	99	0	335	28	30	21	19	1.97
37465149--37465302	43	3.7	43	73	10	138	25	17	25	31	1.97
37465475--37465513	20	1.9	21	89	5	62	48	0	15	35	1.45
37473157--37473326	41	4.2	40	74	18	161	27	26	22	23	1.99
37476721--37477055	57	5.9	57	97	0	616	21	18	23	36	1.95
37477027--37477138	41	2.7	41	76	13	104	25	18	26	28	1.98
37477310--37477348	20	1.9	21	89	5	62	48	0	15	35	1.45
37498377--37498560	40	4.6	40	84	6	239	25	23	26	25	2.00
37505239--37505329	45	2.0	45	89	0	137	37	23	14	25	1.92
37509716--37509827	27	4.2	26	87	7	152	36	23	24	16	1.94
37509716--37509827	54	2.1	54	89	3	172	36	23	24	16	1.94
37515218--37515328	54	2.1	53	88	5	161	36	21	24	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37515218--37515328	26	4.1	27	83	10	138	36	21	24	17	1.94
37516746--37516792	24	2.0	24	91	0	76	23	38	2	36	1.67
37519428--37519452	13	1.9	13	100	0	50	28	24	8	40	1.83
37526175--37526207	11	3.0	11	90	0	57	69	18	0	12	1.18
37526596--37526674	41	1.9	41	97	0	149	35	13	0	50	1.42
37531040--37531109	28	2.5	28	90	4	106	27	12	27	32	1.93
37537850--37537919	28	2.5	28	88	9	99	27	14	27	31	1.95
37543995--37544080	40	2.1	40	93	2	145	45	8	18	27	1.78
37544710--37544787	41	1.9	41	82	10	97	23	17	28	30	1.97
37548461--37548548	29	3.1	28	67	15	72	34	17	23	25	1.96
37550152--37550200	18	2.8	18	76	14	57	44	0	2	53	1.12
37550645--37550685	21	2.0	21	90	0	64	46	0	0	53	1.00
37553619--37553643	13	1.9	13	100	0	50	24	0	4	72	1.02
37557858--37557936	38	2.1	37	86	6	106	26	30	17	25	1.97
37558055--37558197	47	3.0	47	82	4	178	26	32	10	30	1.90
37558275--37558460	47	4.0	47	96	0	318	27	32	9	30	1.89
37562740--37562915	46	3.8	46	77	14	182	22	19	27	29	1.98
37562737--37562908	93	1.8	93	91	2	283	23	20	27	28	1.99
37564983--37565102	49	2.4	49	87	2	161	21	25	20	32	1.98
37565137--37565243	46	2.3	46	80	3	126	22	30	17	28	1.97
37568451--37568536	43	2.0	44	86	2	120	26	19	29	24	1.99
37568902--37569020	43	2.7	43	87	5	150	26	19	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37569314--37569416	38	2.7	38	86	0	143	20	21	23	34	1.96
37568467--37569384	484	1.9	484	98	0	1791	30	11	24	33	1.91
37569420--37569543	45	2.9	43	85	8	155	23	21	30	24	1.99
37573353--37573530	27	6.6	27	82	3	196	27	15	28	29	1.96
37573354--37573509	82	1.9	81	86	3	224	27	15	28	28	1.96
37573350--37573530	82	2.2	81	82	2	220	27	15	27	29	1.96
37578256--37578380	45	2.8	45	86	0	160	24	12	26	36	1.92
37578270--37578433	45	3.7	45	79	4	156	26	15	26	31	1.96
37583768--37583828	30	2.0	30	84	6	79	29	24	9	36	1.88
37587115--37587156	18	2.3	19	80	8	52	59	16	4	19	1.54
37587763--37587824	27	2.3	27	85	0	88	33	12	22	30	1.92
37595991--37596031	14	3.0	14	89	3	57	12	39	21	26	1.89
37605320--37605404	42	2.0	42	93	0	143	51	14	18	15	1.76
37607253--37607277	13	1.9	13	100	0	50	24	32	28	16	1.96
37608244--37608352	43	2.6	43	83	11	127	30	26	19	23	1.98
37610007--37610173	42	4.0	41	77	4	154	29	26	14	28	1.96
37612824--37613006	79	2.3	80	83	5	219	25	27	21	24	1.99
37612822--37613006	40	4.7	40	79	7	207	25	28	21	24	1.99
37614208--37614528	159	2.0	159	98	0	615	32	28	13	26	1.93
37614699--37614867	85	2.0	85	98	1	331	27	26	22	23	2.00
37621350--37621732	40	9.6	40	94	2	601	27	27	20	25	1.99
37627581--37627843	40	6.6	40	87	3	316	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37639700--37639771	27	2.6	28	77	4	74	29	33	12	25	1.92
37639728--37639792	28	2.3	29	83	2	78	29	33	10	26	1.90
37643434--37643492	26	2.2	26	82	8	75	37	27	8	27	1.85
37643601--37643679	27	2.9	27	84	1	104	20	25	17	36	1.94
37647215--37647319	27	3.9	28	85	3	128	20	25	18	35	1.95
37652155--37652399	40	6.2	40	90	2	361	26	28	22	23	1.99
37654622--37654652	16	1.9	16	93	0	53	9	22	22	45	1.81
37658284--37658348	29	2.2	29	91	0	103	21	29	26	23	1.99
37659572--37659733	43	3.8	43	70	16	122	32	25	17	24	1.97
37662955--37663058	28	3.7	27	82	6	111	27	29	14	27	1.95
37662953--37663060	56	1.9	56	85	7	148	27	29	14	27	1.95
37663274--37663327	16	3.4	16	85	10	74	11	24	20	44	1.83
37663274--37663326	24	2.2	24	86	0	70	11	24	18	45	1.82
37675756--37675815	6	9.7	6	91	7	75	66	5	18	10	1.39
37677158--37677211	17	3.1	19	76	12	53	44	3	0	51	1.19
37682554--37682618	23	3.0	22	73	13	71	44	24	15	15	1.85
37683697--37683745	23	2.2	21	85	7	62	53	6	0	40	1.26
37684127--37684186	23	2.6	24	79	12	72	43	1	1	53	1.20
37684130--37684194	30	2.3	28	81	7	78	43	1	1	53	1.19
37683918--37684637	360	2.0	360	100	0	1440	39	12	5	43	1.64
37684487--37684546	23	2.6	24	79	12	72	43	1	1	53	1.20
37684490--37684554	30	2.3	28	81	7	78	43	1	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37685803--37685831	8	3.8	8	95	4	51	20	0	0	79	0.74
37688167--37688219	13	4.1	13	78	7	54	47	7	1	43	1.42
37693184--37693339	68	2.3	67	82	4	181	25	15	18	41	1.89
37696360--37696433	34	2.1	34	90	2	112	27	31	10	31	1.91
37698296--37698598	40	7.6	40	89	2	396	27	27	20	24	1.99
37708192--37708363	40	4.3	40	88	2	222	25	27	21	25	1.99
37708194--37708416	40	5.6	39	83	5	216	25	27	21	25	1.99
37708192--37708416	80	2.8	79	80	7	240	25	27	21	25	1.99
37708348--37708425	40	1.9	41	82	10	97	26	28	20	24	1.99
37721738--37721836	42	2.3	42	82	5	128	33	23	17	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297