genome.fa.s25.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  282  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95988992--95989028	18	2.1	18	100	0	74	67	0	5	27	1.12
96002770--96002807	17	2.2	17	95	0	67	57	13	0	28	1.36
96003143--96003188	24	1.9	24	86	0	65	17	26	8	47	1.76
96009188--96009353	84	2.0	84	96	0	305	31	12	19	36	1.89
96013035--96013080	18	2.6	18	82	3	58	13	17	32	36	1.88
96018012--96018040	14	2.0	15	93	6	51	27	0	20	51	1.47
96019978--96020037	22	2.7	23	73	19	63	66	6	0	26	1.16
96019987--96020020	4	8.0	4	90	9	50	73	2	0	23	0.97
96025594--96025644	23	2.2	24	80	16	63	62	1	29	5	1.29
96033276--96033333	30	1.9	30	85	0	80	18	27	29	24	1.98
96038187--96038228	17	2.5	17	80	7	50	14	14	35	35	1.86
96038260--96038302	17	2.6	15	80	20	50	16	20	32	30	1.95
96038233--96038380	61	2.5	60	85	3	190	18	18	29	33	1.95
96038321--96038363	17	2.5	17	80	3	50	13	20	27	37	1.91
96039031--96039087	22	2.3	23	80	17	62	64	0	5	29	1.15
96052754--96052842	29	3.1	27	82	9	99	28	21	21	29	1.98
96052939--96052982	22	2.0	22	82	8	54	40	29	11	18	1.85
96057426--96057565	16	9.1	15	67	18	67	57	0	8	32	1.34
96057424--96057466	14	2.8	16	77	22	56	65	2	4	27	1.25
96058008--96058052	23	2.0	23	86	0	63	28	22	22	26	1.99
96058506--96058603	51	1.9	51	100	0	196	40	15	13	30	1.85
96060667--96060707	18	2.2	19	86	4	57	4	9	2	82	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96060667--96060714	25	1.9	25	82	0	60	6	10	4	79	1.05
96065690--96065873	40	4.7	40	84	8	209	25	27	22	25	2.00
96065690--96065873	79	2.3	82	82	11	224	25	27	22	25	2.00
96073886--96073928	12	3.6	12	100	0	86	25	16	13	44	1.85
96073989--96074038	6	8.2	6	81	16	50	2	20	2	76	0.99
96073978--96074048	37	1.9	37	86	11	101	2	18	2	76	1.04
96073974--96074034	16	3.8	16	77	14	63	3	19	1	75	1.03
96076714--96076810	30	3.2	30	75	2	106	28	15	26	28	1.96
96077903--96078633	75	9.7	75	95	1	1214	27	18	20	33	1.96
96079778--96079808	11	2.9	11	95	4	55	80	0	0	19	0.71
96080460--96080591	3	45.7	3	81	11	125	29	3	0	65	1.15
96089626--96089666	20	2.0	20	86	9	57	58	2	0	39	1.11
96090274--96090331	23	2.5	23	75	10	57	31	6	1	60	1.33
96090749--96090808	30	2.0	29	84	9	77	33	5	1	60	1.29
96091151--96091195	23	2.0	23	100	0	90	42	4	22	31	1.73
96093736--96093826	44	2.1	44	89	0	137	28	12	10	48	1.74
96098434--96098509	11	6.8	11	72	21	52	42	1	1	55	1.16
96098451--96098657	68	3.1	67	70	21	191	41	3	4	50	1.40
96099828--96099973	48	3.0	48	97	0	274	40	8	13	37	1.75
96100488--96100548	19	3.1	19	84	15	72	37	0	3	59	1.14
96104460--96104492	16	2.1	16	94	0	57	42	24	6	27	1.78
96108582--96108619	17	2.1	19	85	9	53	71	7	15	5	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96109821--96109866	13	3.3	14	80	17	51	30	6	0	63	1.20
96110329--96110363	13	2.7	13	86	0	52	28	0	0	71	0.86
96111057--96111116	31	1.9	31	89	0	93	43	10	21	25	1.83
96112209--96112258	19	2.8	17	80	19	66	62	0	2	36	1.07
96112879--96112932	27	2.0	27	82	7	65	40	14	0	44	1.46
96113579--96113624	20	2.3	21	85	7	60	17	10	4	67	1.37
96113788--96113872	20	4.2	20	76	5	82	18	15	11	54	1.71
96114198--96114247	19	2.6	19	77	3	55	18	14	8	60	1.58
96114263--96114314	26	2.0	27	85	7	72	15	7	9	67	1.41
96114199--96114314	20	5.5	20	66	15	63	21	11	7	59	1.56
96114242--96114334	47	2.0	47	80	4	107	19	9	9	61	1.54
96114350--96114393	20	2.2	20	88	8	63	22	18	0	59	1.38
96114693--96114746	21	2.6	21	85	5	74	20	7	7	64	1.43
96114670--96114762	20	4.5	21	76	8	75	21	12	5	60	1.53
96114771--96114816	20	2.2	21	88	3	67	58	10	19	10	1.61
96116951--96117069	43	2.8	42	81	7	159	31	14	26	27	1.95
96125036--96125145	20	5.5	20	73	4	80	53	10	14	20	1.71
96127390--96127532	56	2.6	56	90	2	216	27	22	11	37	1.89
96128920--96128959	18	2.2	18	90	0	62	45	5	5	45	1.47
96128828--96129061	17	12.6	18	72	15	111	47	10	11	30	1.72
96129234--96129280	20	2.5	19	77	16	53	44	8	17	29	1.78
96144429--96144487	3	18.0	3	86	13	73	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96144419--96144487	10	7.3	10	82	11	74	0	30	0	69	0.89
96144429--96144484	13	4.5	13	80	17	64	0	33	0	66	0.92
96144728--96144924	99	2.0	99	98	0	385	29	24	24	21	1.99
96144938--96145054	30	3.9	30	83	3	139	43	3	23	29	1.70
96144938--96145054	60	2.0	59	84	5	155	43	3	23	29	1.70
96145274--96145482	101	2.1	101	99	0	411	42	17	14	26	1.87
96145427--96145593	54	3.1	55	90	3	257	38	17	15	28	1.90
96145572--96145606	14	2.5	14	90	0	52	60	2	17	20	1.49
96145662--96145695	16	2.1	16	88	0	50	64	5	11	17	1.45
96145537--96145769	91	2.6	87	84	6	308	39	18	16	26	1.91
96145891--96145949	30	2.0	30	86	6	84	49	3	20	27	1.65
96145952--96145986	14	2.4	15	90	4	54	28	0	2	68	1.04
96154661--96154700	19	2.1	20	86	9	57	47	7	5	40	1.54
96154807--96154929	61	2.0	61	100	0	246	39	11	15	34	1.83
96154930--96154976	2	23.5	2	100	0	94	48	0	51	0	1.00
96157650--96157712	25	2.6	25	84	2	83	23	23	15	36	1.94
96157670--96157755	25	3.5	25	74	6	77	25	20	20	32	1.97
96159375--96159408	16	2.1	17	89	10	54	61	0	14	23	1.33
96160875--96160907	18	1.9	17	88	11	50	42	12	15	30	1.83
96167684--96167743	23	2.7	22	72	20	54	35	0	1	63	1.05
96167674--96167739	31	2.1	31	86	5	89	36	0	3	60	1.12
96179726--96179968	40	6.0	40	92	2	355	29	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96179726--96179968	81	3.0	79	89	5	346	29	20	25	24	1.99
96180524--96180553	15	2.0	15	93	0	51	16	0	40	43	1.48
96180566--96180590	13	1.9	13	100	0	50	16	0	44	40	1.47
96180577--96180639	22	2.9	22	79	13	67	20	1	38	39	1.62
96180578--96180633	29	1.9	29	85	7	78	19	1	39	39	1.62
96180601--96180642	22	1.9	22	95	0	75	23	0	33	42	1.55
96180582--96180656	22	3.5	22	80	8	66	21	2	34	41	1.67
96180674--96180719	14	3.4	14	71	17	51	26	2	32	39	1.68
96180848--96180888	21	2.0	21	85	4	57	26	0	34	39	1.57
96180825--96180985	49	3.2	49	82	9	189	27	0	30	41	1.61
96180913--96180953	21	2.0	21	95	0	73	26	0	31	41	1.56
96180888--96180987	28	3.8	28	75	18	106	29	1	28	42	1.62
96181104--96181165	21	3.0	21	83	4	74	25	0	32	41	1.56
96181124--96181195	28	2.5	29	82	10	94	27	0	30	41	1.56
96183698--96183727	14	2.2	13	94	5	51	50	0	13	36	1.42
96183798--96184167	183	2.0	184	96	0	688	27	15	14	42	1.86
96186211--96186323	18	6.1	18	79	8	102	47	21	0	30	1.57
96186224--96186338	9	12.1	9	75	10	104	46	21	0	30	1.57
96186228--96186305	39	2.0	39	94	0	138	47	20	0	32	1.51
96186211--96186336	57	2.2	57	86	0	171	47	21	0	30	1.56
96186235--96186323	39	2.4	37	87	9	119	46	22	1	30	1.59
96188171--96188196	12	2.2	12	100	0	52	34	7	26	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96191888--96191935	21	2.3	21	92	0	78	20	18	58	2	1.49
96192229--96192416	41	4.5	42	89	2	272	21	19	23	36	1.95
96198592--96198657	27	2.4	27	80	5	71	34	18	18	28	1.94
96199084--96199136	26	2.0	26	85	7	72	18	20	28	32	1.97
96203512--96203688	27	6.5	27	82	5	169	28	29	15	26	1.96
96203532--96203687	82	1.9	81	85	3	215	27	30	16	26	1.96
96207092--96207129	19	2.0	19	90	10	60	10	18	44	26	1.82
96207354--96207460	27	4.0	26	75	9	72	33	16	17	31	1.93
96207381--96207443	27	2.3	27	86	0	81	34	17	20	26	1.95
96207700--96207742	22	2.0	22	95	0	77	16	27	27	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297