genome.fa.s25.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  196  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66477426--66477684	129	2.0	129	98	0	500	42	19	7	30	1.79
66477820--66477879	30	2.0	30	90	0	93	30	25	8	36	1.85
66480835--66480861	12	2.2	12	100	0	54	59	7	18	14	1.58
66483237--66483409	27	6.4	27	86	0	238	35	19	20	24	1.96
66492130--66492427	48	6.2	48	93	0	497	36	6	25	32	1.81
66492560--66492706	37	4.0	37	90	0	213	23	17	30	27	1.97
66492560--66492704	74	2.0	74	91	0	236	23	17	31	27	1.97
66494754--66494931	27	6.6	27	90	0	266	34	17	21	25	1.96
66495572--66495623	27	2.0	26	84	3	68	17	26	21	34	1.95
66500058--66500102	23	2.0	23	100	0	90	22	6	8	62	1.48
66505946--66506033	40	2.2	40	97	0	167	52	11	12	23	1.71
66507045--66507145	47	2.2	46	85	1	130	28	17	24	28	1.98
66511813--66511871	30	2.0	30	82	0	73	38	6	27	27	1.81
66512087--66512133	19	2.3	20	82	10	60	36	0	14	48	1.44
66512487--66512874	50	7.7	50	79	6	417	26	17	25	30	1.97
66512483--66512871	151	2.6	151	92	0	672	25	18	25	30	1.98
66513074--66513105	16	2.0	16	93	0	55	46	0	18	34	1.49
66514341--66514430	45	2.0	45	95	0	162	44	11	26	17	1.82
66515719--66515853	70	1.9	70	89	3	209	31	12	18	37	1.88
66516914--66517310	45	8.9	45	92	2	615	23	21	28	26	1.99
66519988--66520145	43	3.7	43	77	3	167	32	29	16	21	1.95
66523592--66523626	9	3.9	9	96	0	61	5	22	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66531898--66531974	39	2.0	39	97	0	145	44	14	10	31	1.79
66535375--66535491	56	2.1	56	100	0	234	29	16	16	37	1.90
66536869--66537044	46	3.8	46	80	10	214	21	20	28	29	1.98
66536863--66537032	93	1.8	93	96	0	313	21	20	30	27	1.98
66539983--66540032	15	3.4	15	86	2	66	10	18	12	60	1.59
66542415--66542590	46	3.8	46	80	10	214	21	20	28	29	1.98
66542409--66542578	93	1.8	93	96	0	313	21	20	30	27	1.98
66553118--66554110	47	21.1	47	98	0	1887	33	12	27	25	1.92
66553991--66554066	23	3.2	25	62	24	63	28	13	34	23	1.92
66554080--66554261	48	3.8	48	89	5	285	36	6	26	30	1.82
66554081--66554261	98	1.9	96	90	4	292	36	6	26	30	1.82
66554410--66554481	37	1.9	37	94	0	126	22	19	30	27	1.98
66555457--66555500	18	2.5	17	85	7	52	50	15	13	20	1.78
66555821--66555919	27	3.7	27	88	8	139	41	18	14	26	1.88
66556037--66556077	18	2.3	19	79	12	50	21	41	21	14	1.89
66559998--66560066	27	2.6	27	85	0	84	21	20	14	43	1.87
66562079--66562113	13	2.6	13	95	4	61	74	5	8	11	1.22
66562090--66562129	18	2.3	18	87	12	57	75	5	10	10	1.19
66566113--66566144	12	2.5	13	90	10	57	21	9	21	46	1.79
66566446--66567314	432	2.0	432	99	0	1702	23	21	23	31	1.99
66569014--66569104	45	2.0	45	100	0	182	26	13	6	53	1.63
66569741--66569788	23	2.1	23	100	0	96	52	22	4	20	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66572662--66572761	42	2.4	42	86	0	128	23	26	24	27	2.00
66574955--66575005	24	2.1	24	85	7	68	23	17	23	35	1.95
66575209--66575592	27	14.3	27	85	0	437	25	17	18	37	1.93
66575523--66575644	27	4.5	26	83	4	109	31	13	18	37	1.88
66575579--66575664	27	3.2	27	85	6	77	32	8	18	40	1.80
66576649--66576766	27	4.4	27	86	2	157	36	20	19	23	1.95
66576649--66576762	54	2.1	54	91	1	185	36	19	20	23	1.95
66588683--66589042	98	3.7	98	98	0	686	21	25	20	31	1.98
66597904--66598309	100	4.1	100	98	0	776	41	17	4	36	1.69
66600893--66601008	42	2.8	42	79	7	119	16	25	16	42	1.88
66602839--66602944	47	2.2	47	81	8	133	47	11	10	31	1.73
66608727--66608817	45	2.0	44	93	2	155	30	17	29	20	1.96
66616585--66616637	23	2.4	22	76	20	56	9	18	1	69	1.25
66617911--66617944	9	3.9	9	88	7	52	8	8	11	70	1.34
66633366--66633659	147	2.0	147	99	0	579	30	6	24	38	1.80
66637955--66638014	27	2.3	26	85	2	75	35	20	23	21	1.96
66637982--66638123	67	2.1	67	88	5	203	30	22	28	18	1.97
66638053--66638104	27	2.0	26	84	3	68	34	21	26	17	1.95
66645197--66645256	27	2.3	26	85	2	75	35	20	23	21	1.96
66645218--66645281	33	2.0	32	84	3	83	37	20	21	20	1.94
66655397--66655602	100	2.1	100	96	0	376	41	17	4	36	1.70
66658186--66658301	42	2.8	42	79	7	119	16	25	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66660132--66660237	47	2.2	47	81	8	133	47	11	10	31	1.73
66662994--66663288	148	2.0	148	99	0	581	14	32	10	42	1.79
66680539--66680582	18	2.4	19	82	17	58	43	9	9	38	1.68
66683459--66683492	13	2.6	13	95	0	59	58	8	5	26	1.51
66685167--66685214	15	3.3	15	73	5	53	31	0	25	43	1.55
66685161--66685220	29	2.1	29	90	0	93	30	0	28	41	1.56
66687229--66687498	46	5.7	49	75	14	180	25	19	28	25	1.99
66687278--66687498	49	4.6	48	74	11	163	25	19	29	26	1.98
66690469--66690565	30	3.2	30	73	2	97	29	16	25	27	1.97
66696526--66696752	27	8.4	27	85	2	296	35	19	19	25	1.96
66697032--66697185	67	2.3	67	97	0	290	18	27	22	30	1.98
66697118--66697169	27	2.0	26	85	11	70	17	23	23	36	1.95
66697288--66697412	6	20.2	6	71	18	87	20	17	13	48	1.81
66697288--66697354	25	2.7	25	80	0	80	20	17	11	49	1.79
66697310--66697392	37	2.2	37	82	0	103	19	16	15	48	1.82
66697353--66697412	25	2.4	25	91	0	93	20	18	15	46	1.84
66697289--66697411	62	2.0	62	93	0	210	19	17	13	48	1.80
66697288--66697392	31	3.4	30	75	15	106	20	17	14	48	1.81
66697323--66697411	19	4.4	19	73	22	74	19	17	14	48	1.81
66706991--66707029	20	2.0	20	94	0	69	79	2	17	0	0.84
66706988--66707029	15	2.9	14	85	7	57	80	2	16	0	0.81
66709211--66709354	27	5.3	27	82	3	173	26	20	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66709213--66709354	54	2.7	53	87	4	205	26	21	16	35	1.94
66716477--66716606	64	2.0	64	91	2	208	26	16	18	39	1.91
66719600--66719658	16	3.6	16	80	8	66	35	37	5	22	1.76
66722594--66722679	43	2.0	43	88	0	127	30	33	17	18	1.94
66733388--66733649	39	6.7	40	88	7	337	24	27	22	25	2.00
66736591--66736662	23	3.1	23	91	0	117	38	27	9	23	1.86
66739999--66740038	20	2.0	20	90	0	62	35	12	5	47	1.63
66742541--66742572	7	4.4	7	96	4	55	75	0	0	25	0.81
66742525--66742582	22	2.7	21	76	15	64	72	3	1	22	1.09
66747793--66747952	78	2.1	78	93	0	275	38	4	20	37	1.72
66753132--66753185	27	2.0	27	100	0	108	33	22	7	37	1.82
66754012--66754113	50	2.0	51	88	1	152	37	23	9	29	1.87
66754937--66755172	41	5.8	40	83	3	249	24	26	12	36	1.91
66754939--66755172	81	2.9	81	84	3	283	24	25	12	36	1.91
66755181--66755227	23	2.0	23	91	0	76	31	6	25	36	1.81
66766027--66766078	21	2.2	24	80	16	65	28	7	19	44	1.78
66772316--66772372	30	1.9	30	85	7	80	40	7	28	24	1.81
66772867--66773000	43	3.1	43	77	10	139	23	14	29	32	1.94
66772867--66772957	42	2.1	41	84	9	121	24	13	28	34	1.93
66772972--66773071	51	2.0	51	85	0	137	25	18	26	31	1.97
66773954--66774023	35	2.0	35	100	0	140	45	17	14	22	1.84
66775527--66775573	24	2.0	24	100	0	94	27	4	21	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66775947--66776007	20	3.0	20	67	13	52	26	27	11	34	1.91
66775802--66776038	41	5.8	41	80	0	224	21	26	15	36	1.93
66776534--66776745	117	1.8	118	91	3	356	45	23	8	22	1.80
66776912--66776958	16	2.9	16	84	15	69	31	0	25	42	1.55
66776982--66777027	17	2.8	16	80	6	56	19	6	34	39	1.78
66780160--66780330	43	4.0	43	80	6	186	34	23	14	26	1.94
66780448--66780517	35	2.0	35	83	5	88	48	12	5	32	1.65
66786253--66786311	24	2.5	24	78	13	59	66	1	30	1	1.12
66796557--66797102	40	13.6	40	97	1	965	22	22	27	27	1.99
66807212--66807258	22	2.1	22	85	14	62	40	8	10	40	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297