genome.fa.s25.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  87  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31517361--31517507	50	3.0	49	77	2	177	27	17	27	28	1.97
31518716--31518751	17	2.1	17	94	0	63	25	44	13	16	1.85
31521270--31521317	24	2.0	24	87	0	69	16	27	16	39	1.90
31521407--31521471	27	2.5	25	78	11	67	16	18	24	40	1.91
31521510--31521602	24	3.8	25	71	16	77	18	21	19	40	1.91
31521520--31521639	24	5.0	24	65	17	68	20	22	19	38	1.94
31522574--31522616	21	2.0	22	82	13	54	51	11	2	34	1.51
31533388--31533511	62	2.0	62	93	0	212	20	32	10	37	1.86
31533619--31534172	277	2.0	277	99	0	1099	28	24	15	31	1.96
31557737--31557784	22	2.2	22	100	0	96	18	8	14	58	1.61
31562374--31562430	2	28.5	2	81	0	69	42	0	57	0	0.98
31562653--31562700	23	2.0	23	84	4	60	62	10	4	22	1.44
31566534--31566742	46	4.5	44	72	13	147	22	28	19	30	1.98
31569567--31569650	23	3.7	23	95	0	150	26	16	16	40	1.90
31571778--31571818	22	1.9	21	90	5	64	48	2	19	29	1.61
31574793--31574837	19	2.4	19	100	0	90	37	22	4	35	1.74
31575172--31575204	16	1.9	18	88	11	52	51	18	12	18	1.76
31581443--31581536	46	2.0	46	83	4	118	44	20	13	21	1.86
31581448--31581538	23	4.0	23	72	5	67	43	21	14	19	1.87
31587969--31588014	20	2.3	20	88	0	65	45	17	10	26	1.81
31591829--31591892	13	4.9	13	86	0	92	35	23	7	32	1.84
31604198--31604261	20	3.2	19	74	22	60	35	3	1	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31609097--31609127	16	1.9	16	93	0	53	77	0	3	19	0.90
31611594--31611662	34	2.0	34	100	0	138	28	20	13	37	1.90
31615806--31615867	18	3.5	17	78	12	54	69	0	3	27	1.04
31619373--31619441	33	2.1	33	97	2	131	36	11	7	44	1.68
31623258--31623306	25	2.0	25	83	0	62	55	4	12	28	1.55
31624470--31624517	22	2.2	22	85	7	62	8	10	2	79	1.02
31627902--31627943	22	1.9	22	85	9	59	7	9	54	28	1.59
31637161--31637194	17	2.0	17	88	0	50	52	5	14	26	1.64
31643232--31643346	53	2.2	53	88	3	169	28	26	15	28	1.96
31646108--31646155	24	2.0	25	87	4	71	25	22	16	35	1.95
31659109--31659262	41	3.7	42	80	4	177	31	16	23	29	1.96
31666631--31666785	43	3.7	42	76	5	134	30	13	23	32	1.93
31666635--31666727	41	2.2	41	82	1	105	29	12	23	34	1.92
31670746--31670770	4	6.2	4	100	0	50	24	0	0	76	0.80
31671485--31671526	18	2.4	17	84	15	50	47	2	2	47	1.28
31671512--31671564	22	2.3	23	80	12	63	43	0	0	56	0.99
31671936--31671972	2	18.5	2	100	0	74	0	48	0	51	1.00
31674868--31674894	2	13.5	2	100	0	54	0	48	0	51	1.00
31676884--31677021	70	2.0	70	95	0	249	21	13	20	45	1.84
31688910--31688951	18	2.5	18	81	11	54	33	0	4	61	1.17
31690909--31690996	26	3.4	25	72	10	79	50	2	2	45	1.27
31696317--31696625	79	3.9	79	91	0	458	30	21	15	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31696592--31696729	40	3.5	40	80	0	141	34	20	14	31	1.92
31698363--31698399	18	2.1	18	89	0	56	67	0	2	29	1.04
31699497--31699550	28	2.0	27	82	17	67	48	18	9	24	1.77
31700750--31700843	9	10.6	9	76	6	93	41	19	10	28	1.84
31712706--31712762	26	2.2	26	83	3	69	36	19	17	26	1.94
31719757--31719854	35	2.8	35	85	1	124	15	11	29	43	1.81
31723227--31723282	28	2.0	28	96	0	103	44	23	10	21	1.83
31726017--31726125	42	2.6	42	83	1	119	14	23	17	44	1.86
31726017--31726089	21	3.4	21	73	1	65	15	21	16	46	1.83
31727193--31727371	85	2.1	85	100	0	358	37	8	27	26	1.85
31728656--31728907	47	5.3	47	91	2	391	33	9	29	27	1.88
31732092--31732187	40	2.5	38	76	6	111	38	37	10	13	1.79
31732110--31732185	40	1.9	40	88	0	116	38	35	11	14	1.83
31739650--31739725	40	1.9	40	91	0	125	40	36	9	13	1.76
31745463--31745558	40	2.4	40	82	6	115	37	25	16	20	1.93
31745617--31745875	135	1.9	135	82	6	321	28	18	19	33	1.95
31746371--31746432	14	4.3	15	79	8	65	17	1	38	41	1.59
31746332--31746401	22	3.2	22	69	16	56	24	1	30	44	1.62
31746371--31746411	15	2.8	15	88	3	57	21	0	34	43	1.53
31746535--31746596	14	4.3	15	79	8	65	17	1	38	41	1.59
31746496--31746565	22	3.2	22	69	16	56	24	1	30	44	1.62
31746535--31746575	15	2.8	15	88	3	57	21	0	34	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746309--31746683	164	2.3	164	96	2	691	21	3	33	41	1.69
31746535--31746662	21	6.0	21	71	6	87	19	2	37	40	1.65
31746860--31746906	21	2.2	22	92	3	78	19	2	42	36	1.63
31746841--31746967	7	17.7	7	71	11	51	22	0	33	42	1.60
31746863--31746966	22	4.8	22	73	10	72	23	0	34	41	1.61
31747979--31748034	18	3.5	15	81	18	60	37	10	16	35	1.83
31747977--31748055	35	2.2	37	86	13	121	37	10	16	35	1.82
31747977--31748048	19	3.9	19	89	10	123	37	11	15	36	1.83
31747977--31748071	17	4.8	22	84	12	79	36	9	15	37	1.80
31753116--31753338	79	2.8	78	83	7	272	24	27	22	25	2.00
31753116--31753338	39	5.7	40	87	6	280	24	27	22	25	2.00
31754416--31754440	13	1.9	13	100	0	50	0	8	4	88	0.64
31758835--31759424	220	2.7	220	91	0	948	32	18	22	26	1.97
31759366--31759582	78	2.8	78	94	0	380	30	20	25	23	1.98
31760054--31760151	35	2.7	37	87	12	150	37	10	16	35	1.82
31760054--31760144	19	4.9	19	92	8	161	37	10	15	36	1.83
31760054--31760167	19	5.8	22	87	10	96	36	9	15	37	1.81
31760434--31760470	18	2.0	19	89	5	58	32	0	0	67	0.91
31766729--31766881	76	2.0	76	100	0	306	37	3	13	45	1.62
31767039--31767118	42	1.9	42	87	5	117	17	20	16	46	1.84
31767086--31767154	21	3.3	20	72	6	66	14	23	20	42	1.89
31770772--31770851	42	1.9	42	87	5	117	17	20	16	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31770819--31770887	21	3.3	20	72	6	66	14	23	20	42	1.89
31773205--31775933	893	3.0	893	90	6	3980	31	13	23	31	1.93
31774420--31776297	939	2.0	939	100	0	3756	31	13	23	31	1.93
31782461--31782494	3	11.3	3	87	0	50	64	2	0	32	1.08
31782725--31782767	23	2.0	22	86	9	61	72	0	27	0	0.85
31792917--31793076	43	3.7	43	83	3	189	33	25	15	26	1.95
31797151--31797207	15	3.9	14	74	17	53	36	5	0	57	1.21
31797558--31797721	85	1.9	85	90	3	258	40	15	15	28	1.88
31797978--31798086	55	2.0	55	92	0	182	33	2	20	43	1.66
31799391--31799486	49	2.0	49	97	0	183	29	6	25	39	1.80
31800189--31800281	27	3.4	27	82	7	116	15	23	24	36	1.93
31800189--31800300	54	2.1	54	84	3	145	15	24	23	37	1.93
31807762--31807845	27	3.1	27	79	8	98	15	22	22	39	1.92
31807762--31807873	54	2.1	54	81	3	127	15	22	23	39	1.91
31813593--31813648	27	2.1	27	96	0	103	28	17	17	35	1.93
31819964--31820063	40	2.5	40	88	1	155	22	22	26	30	1.99
31838957--31838999	20	2.2	19	84	12	52	13	13	20	51	1.76
31840159--31840390	56	4.1	56	98	0	446	45	9	21	22	1.81
31854693--31854746	27	2.0	27	100	0	108	29	11	11	48	1.73
31858577--31858615	16	2.4	17	86	4	53	69	0	30	0	0.89
31859320--31859355	7	5.1	7	93	0	54	30	0	8	61	1.26
31861696--31861826	47	2.8	48	82	7	171	26	16	32	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31862777--31862868	41	2.2	41	90	0	139	17	23	39	19	1.92
31865297--31865649	47	7.4	47	95	1	589	32	7	29	29	1.86
31867988--31868053	30	2.2	30	97	2	125	50	6	3	40	1.43
31868266--31868374	6	18.2	6	66	23	52	51	4	0	44	1.22
31868272--31868322	20	2.8	17	80	19	59	49	5	0	45	1.26
31868272--31868365	17	5.5	17	65	25	56	50	5	0	44	1.24
31870578--31871310	243	3.0	243	98	0	1403	34	15	11	38	1.83
31873066--31873383	46	6.7	49	77	13	271	23	30	18	26	1.98
31873072--31873382	94	3.3	93	80	10	323	24	30	18	26	1.98
31873072--31873379	140	2.2	141	82	10	362	24	30	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297