genome.fa.s25.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  98  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35371057--35371116	27	2.3	27	85	2	77	21	23	20	35	1.96
35373680--35374086	203	2.0	204	98	0	780	42	19	12	25	1.86
35374266--35374376	58	1.9	58	98	0	213	34	16	12	36	1.86
35375698--35375777	15	5.4	15	72	12	67	57	12	17	12	1.65
35375709--35375786	15	5.2	15	70	11	61	55	14	16	14	1.70
35378786--35378871	46	1.9	45	85	4	120	31	29	18	20	1.97
35381071--35381274	53	3.8	53	74	5	158	37	16	22	23	1.93
35382470--35382524	25	2.3	25	90	6	87	41	14	10	32	1.81
35382522--35382565	22	2.0	22	100	0	88	31	13	22	31	1.93
35392264--35392295	15	2.1	15	100	0	64	40	12	25	21	1.88
35393117--35393173	23	2.7	21	84	10	73	57	17	1	22	1.49
35393118--35393175	9	5.7	10	78	13	57	56	18	1	22	1.50
35395352--35395405	26	2.0	28	85	10	76	5	22	3	68	1.26
35395350--35395429	36	2.2	37	78	14	87	6	20	2	71	1.20
35398442--35398516	20	3.8	20	96	0	141	34	12	20	33	1.89
35398430--35398516	9	8.6	11	73	16	82	34	12	19	33	1.90
35399291--35399398	54	2.0	54	96	0	198	37	18	11	33	1.86
35399315--35399400	27	3.2	27	63	12	68	38	17	10	33	1.84
35406576--35406628	9	5.4	10	78	17	58	35	11	18	33	1.87
35406582--35406628	20	2.3	20	89	7	69	36	12	19	31	1.89
35406678--35406750	26	2.8	26	93	0	128	27	26	21	24	2.00
35413929--35413974	24	1.9	24	82	8	58	10	23	15	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35422379--35422422	19	2.3	19	84	7	54	13	25	38	22	1.91
35424736--35424773	17	2.2	17	86	9	51	34	2	0	63	1.09
35428687--35428905	47	4.7	47	74	7	189	26	21	30	21	1.98
35428687--35428905	94	2.4	91	82	5	235	26	21	30	21	1.98
35433091--35433229	40	3.5	40	89	0	224	25	27	23	23	2.00
35445237--35445262	12	2.2	12	100	0	52	61	7	0	30	1.24
35445636--35445665	13	2.3	13	94	0	51	20	0	0	80	0.72
35447915--35447942	14	2.0	14	100	0	56	42	14	28	14	1.84
35447916--35447949	14	2.4	14	90	0	50	47	8	29	14	1.75
35448702--35448765	20	3.2	20	74	12	58	48	4	10	35	1.59
35449797--35449839	18	2.2	20	88	8	63	69	2	4	23	1.18
35453949--35454167	40	5.5	40	86	4	257	22	22	27	26	1.99
35453949--35454133	81	2.3	80	87	3	255	21	23	27	28	1.99
35457991--35458101	43	2.6	42	78	5	116	28	16	22	32	1.95
35460476--35460507	16	2.0	16	100	0	64	56	6	12	25	1.59
35465581--35465702	43	2.8	43	77	4	120	27	18	24	28	1.98
35467750--35467964	47	4.6	47	93	0	331	28	30	8	33	1.86
35467800--35467878	25	3.3	25	67	22	78	31	27	5	35	1.79
35481077--35481156	39	2.1	39	97	0	151	57	11	7	23	1.59
35482172--35482205	17	2.0	17	100	0	68	52	17	5	23	1.66
35488660--35488755	46	2.2	42	80	14	106	31	13	1	54	1.46
35493027--35493077	19	2.7	19	93	0	84	13	29	33	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35497330--35497671	174	2.0	174	100	0	684	33	20	11	34	1.89
35497822--35497945	45	2.8	43	78	9	126	23	28	22	25	1.99
35498006--35498364	43	8.3	43	100	0	718	30	34	25	9	1.87
35503141--35504092	443	2.1	443	94	1	1658	32	23	12	30	1.92
35504024--35504436	43	9.6	43	100	0	826	30	34	25	9	1.88
35504429--35504508	38	2.1	38	88	0	115	31	27	20	21	1.98
35505602--35505626	10	2.5	10	100	0	50	48	8	0	44	1.32
35506596--35506718	43	2.9	42	79	4	140	24	17	25	32	1.97
35511571--35511690	60	2.0	60	96	0	222	28	29	6	35	1.82
35536134--35536326	40	4.8	39	79	7	158	26	21	27	24	1.99
35536169--35536326	80	2.0	80	83	2	201	27	20	27	24	1.99
35540019--35540447	47	9.1	47	94	1	723	32	9	28	30	1.88
35540566--35540644	37	2.1	37	88	4	115	25	18	30	25	1.98
35547768--35547811	21	2.1	21	91	0	70	22	29	13	34	1.93
35547826--35547856	15	2.1	15	93	0	53	64	6	0	29	1.18
35551074--35551101	14	2.0	14	100	0	56	28	7	21	42	1.79
35553023--35553094	33	2.2	33	94	0	126	43	12	4	40	1.62
35553033--35553084	15	3.3	15	72	15	50	42	15	3	38	1.65
35554682--35554804	56	2.2	56	89	5	187	35	25	12	26	1.91
35556307--35556674	48	7.8	47	77	11	283	24	31	18	25	1.98
35556309--35556677	46	7.8	48	76	11	266	24	31	18	25	1.98
35556317--35556719	94	4.3	95	77	12	341	24	30	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35562792--35562829	15	2.6	14	88	12	58	39	0	0	60	0.97
35563807--35563846	21	1.9	21	94	0	71	55	10	5	30	1.54
35563972--35564016	22	2.0	22	100	0	90	60	0	4	35	1.17
35566527--35566585	25	2.2	27	85	11	86	20	16	0	62	1.32
35566528--35566577	25	2.0	25	96	0	91	22	12	0	66	1.24
35568015--35568101	42	2.1	42	97	0	165	33	28	13	24	1.93
35575674--35575766	24	3.9	24	78	4	80	43	21	20	15	1.88
35580678--35580716	19	2.1	19	100	0	78	33	25	15	25	1.95
35584461--35584494	16	2.1	17	89	10	54	61	0	14	23	1.33
35586704--35586784	42	1.9	42	87	0	117	19	24	27	28	1.99
35588619--35588792	48	3.6	48	88	1	251	24	16	30	28	1.97
35588609--35588822	96	2.2	96	78	9	247	26	17	28	27	1.98
35590459--35590664	27	7.6	27	85	4	144	30	28	14	26	1.95
35590459--35590664	55	3.8	55	86	2	272	30	28	14	26	1.95
35590459--35590663	82	2.5	83	86	3	265	30	28	14	26	1.95
35598551--35598728	27	6.6	27	84	3	205	29	28	15	26	1.96
35598572--35598727	82	1.9	81	88	3	233	29	28	15	26	1.96
35606148--35606175	13	2.2	13	100	0	56	21	7	25	46	1.76
35607597--35607708	27	4.2	26	84	7	134	36	23	23	16	1.94
35607597--35607708	54	2.1	54	86	3	154	36	23	23	16	1.94
35612105--35612192	44	2.0	44	95	0	158	31	34	9	25	1.87
35619513--35619583	24	3.0	24	95	0	124	25	38	1	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35622958--35622998	20	2.0	20	95	0	73	39	7	19	34	1.80
35637916--35637946	15	2.1	15	93	0	53	64	6	0	29	1.18
35643136--35643191	18	3.3	18	73	14	64	44	12	1	41	1.53
35643120--35643191	33	2.2	33	94	0	126	43	13	2	40	1.59
35643130--35643181	15	3.3	15	72	15	50	42	17	1	38	1.60
35645132--35645158	12	2.2	12	100	0	54	51	7	0	40	1.30
35645646--35645823	27	6.6	27	83	3	205	26	15	28	29	1.96
35645647--35645802	82	1.9	81	88	3	233	26	15	28	29	1.96
35645643--35645823	82	2.2	81	83	2	229	27	15	27	29	1.96
35653836--35654013	27	6.6	27	83	3	205	26	15	28	29	1.96
35653837--35653992	82	1.9	81	88	3	233	26	15	28	29	1.96
35653833--35654013	82	2.2	81	83	2	229	27	15	27	29	1.96
35656319--35656466	56	2.6	56	89	0	224	33	22	14	29	1.94
35657964--35658279	46	6.7	50	75	11	181	24	29	19	26	1.98
35658111--35658327	46	4.7	45	75	12	174	23	29	19	27	1.98
35667018--35667060	19	2.2	20	83	8	61	27	18	18	34	1.95
35667024--35667062	19	2.1	19	95	0	69	33	23	15	28	1.95
35670334--35670367	16	2.1	17	89	10	54	61	0	14	23	1.33
35676585--35676758	48	3.6	48	91	0	276	24	17	31	27	1.97
35676588--35676801	48	4.5	48	86	2	162	25	18	29	26	1.98
35676588--35676844	96	2.7	96	78	7	244	25	18	29	26	1.98
35683379--35683410	11	2.8	12	90	9	57	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35685548--35685683	51	2.7	49	85	2	182	25	19	26	27	1.99
35687310--35687337	13	2.2	13	100	0	56	21	7	25	46	1.76
35691147--35691184	19	2.0	19	89	0	58	44	15	5	34	1.69
35694081--35694177	30	3.2	31	73	5	92	30	27	12	28	1.93
35695892--35695926	11	3.1	11	92	8	61	71	8	0	20	1.11
35695894--35695939	12	3.7	12	88	5	65	73	6	4	15	1.19
35696871--35696927	11	5.5	10	73	22	55	78	0	17	3	0.88
35696871--35696927	5	11.0	5	75	20	55	78	0	17	3	0.88
35696996--35697020	12	2.1	12	100	0	50	76	0	16	8	1.02
35696990--35697045	18	3.1	18	76	5	51	69	3	19	7	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297