genome.fa.s25.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  191  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64764024--64764060	19	1.9	19	89	10	58	37	2	2	56	1.28
64764043--64764089	23	2.1	22	88	4	67	42	4	0	53	1.20
64765453--64765495	20	2.1	21	91	4	70	39	9	4	46	1.57
64765502--64765569	23	3.2	22	78	14	61	47	0	8	44	1.34
64766150--64766192	14	3.0	14	82	3	50	55	2	0	41	1.12
64766817--64766846	14	2.1	14	93	0	51	63	0	6	30	1.20
64770154--64770225	28	2.5	28	84	2	81	36	4	0	59	1.17
64770164--64770215	18	2.7	20	79	8	72	36	5	0	57	1.23
64770119--64770227	10	11.1	10	69	17	68	37	4	0	56	1.26
64773132--64773174	22	2.0	21	86	9	59	30	4	11	53	1.57
64778277--64778370	42	2.3	42	86	1	127	31	4	13	50	1.61
64781542--64781586	19	2.4	19	96	0	81	24	13	33	28	1.93
64792592--64792763	43	4.0	43	76	8	163	31	23	16	27	1.96
64793422--64793447	11	2.4	11	100	0	52	61	0	0	38	0.96
64794261--64794463	42	4.9	42	77	5	198	27	23	15	33	1.95
64794538--64794575	19	2.0	19	94	0	67	23	18	31	26	1.97
64801135--64801181	25	2.0	25	83	8	62	51	31	2	14	1.55
64801862--64802022	41	3.8	43	81	11	174	24	22	18	34	1.96
64804537--64804581	19	2.3	19	81	11	56	48	0	13	37	1.42
64804880--64805373	269	1.8	269	91	2	814	39	7	18	35	1.78
64805710--64805822	26	4.3	26	97	0	208	30	5	27	36	1.79
64811501--64811535	14	2.5	14	100	0	70	11	5	54	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64812728--64812766	18	2.2	18	86	13	55	76	2	15	5	1.06
64814561--64814646	28	3.0	28	77	13	93	62	3	3	30	1.28
64814568--64814658	28	3.1	27	77	12	92	64	2	2	30	1.17
64814505--64814658	57	2.7	56	80	9	145	64	2	3	29	1.22
64815017--64815163	77	1.9	77	84	0	195	30	10	18	40	1.85
64820084--64820116	12	2.8	12	95	0	57	24	48	18	9	1.76
64827951--64827979	14	2.1	14	100	0	58	6	13	37	41	1.72
64834388--64834452	34	1.9	34	93	0	112	16	35	33	13	1.89
64836633--64836681	24	2.0	25	84	8	64	42	20	0	36	1.52
64844791--64844831	7	5.9	7	83	11	57	68	0	2	29	1.03
64848575--64848607	3	11.0	3	93	0	57	66	3	0	30	1.06
64852651--64852697	25	1.9	25	91	4	78	48	0	6	44	1.28
64868505--64868676	93	1.8	93	96	0	317	27	29	21	20	1.98
64868498--64868673	46	3.8	46	79	12	216	28	29	21	20	1.98
64870997--64871025	14	2.1	14	100	0	58	62	6	6	24	1.45
64871441--64871499	29	2.0	29	93	0	100	28	23	0	47	1.52
64871440--64871512	29	2.6	28	85	10	96	28	20	1	49	1.57
64875223--64875247	13	1.9	13	100	0	50	48	24	4	24	1.68
64882345--64882409	21	3.1	21	84	0	85	23	15	13	47	1.81
64882290--64882474	84	2.2	84	85	1	237	20	20	15	44	1.87
64882290--64882479	42	4.5	42	79	2	159	21	20	14	44	1.87
64885343--64885377	15	2.2	16	90	5	54	17	28	2	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64885818--64885891	34	2.2	34	100	0	148	32	14	10	41	1.81
64887807--64887845	19	2.1	19	85	0	51	79	2	10	7	1.02
64889140--64889182	15	2.8	16	79	13	54	53	6	6	32	1.55
64889140--64889177	15	2.5	15	86	0	58	52	5	5	36	1.47
64892457--64892497	20	2.0	20	95	0	73	41	12	4	41	1.64
64897800--64897927	46	2.8	46	83	3	150	32	28	20	18	1.96
64904021--64904132	42	2.7	42	76	8	111	32	22	14	31	1.93
64909080--64909122	14	2.8	16	75	13	54	27	4	2	65	1.25
64920092--64920121	16	1.9	16	93	6	53	73	0	26	0	0.84
64920998--64921545	206	2.7	206	93	1	884	31	18	21	28	1.97
64923451--64923493	14	2.8	16	75	13	54	27	4	2	65	1.25
64926804--64926842	20	2.0	20	100	0	78	41	12	5	41	1.65
64928164--64928246	40	2.1	40	100	0	166	50	21	8	19	1.73
64942030--64942073	24	1.9	23	81	9	54	40	11	4	43	1.61
64942315--64942400	42	2.0	42	93	0	145	41	10	8	39	1.69
64944553--64944736	40	4.6	40	81	6	187	23	20	27	28	1.99
64951964--64952009	23	2.0	23	100	0	92	39	21	8	30	1.84
64952222--64952357	40	3.4	39	88	2	182	23	15	25	36	1.94
64956192--64956304	58	1.9	58	92	0	190	53	4	21	20	1.62
64956329--64956361	15	2.2	15	89	10	50	75	0	6	18	1.00
64956839--64956878	18	2.2	18	86	8	55	25	22	2	50	1.62
64958477--64958530	20	2.7	20	76	0	54	11	25	18	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64987719--64987882	43	3.9	43	76	2	134	28	14	25	32	1.94
64988719--64988810	29	3.2	29	65	17	82	16	10	27	45	1.80
64988689--64988810	58	2.1	58	98	0	235	16	10	26	46	1.79
64994958--64995077	46	2.6	44	83	7	143	25	20	30	24	1.99
64996367--64996406	21	2.0	21	85	5	55	12	42	25	20	1.86
64998190--64998235	23	2.1	22	88	11	69	30	4	2	63	1.26
64998170--64998247	29	2.6	29	78	15	79	37	3	1	57	1.25
65001937--65001982	23	2.1	22	88	11	69	30	4	2	63	1.26
65001917--65001994	29	2.6	29	78	15	79	37	3	1	57	1.25
65013416--65013631	107	2.0	108	89	2	328	44	11	8	35	1.71
65026128--65026305	27	6.6	27	83	3	205	26	15	28	29	1.96
65026129--65026284	82	1.9	81	88	3	233	26	15	28	29	1.96
65026125--65026305	82	2.2	81	83	2	229	27	15	27	29	1.96
65034191--65034368	27	6.6	27	83	3	205	26	15	28	29	1.96
65034192--65034347	82	1.9	81	88	3	233	26	15	28	29	1.96
65034188--65034368	82	2.2	81	83	2	229	27	15	27	29	1.96
65075231--65075293	31	2.0	31	100	0	126	31	28	9	30	1.89
65084647--65084752	29	3.7	29	69	18	85	48	15	12	24	1.79
65091621--65091678	29	2.0	28	83	9	73	41	5	0	53	1.23
65091664--65091711	24	2.0	25	84	12	64	43	4	2	50	1.33
65136762--65136797	15	2.5	15	95	4	65	22	11	5	61	1.50
65139213--65139390	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65139214--65139369	82	1.9	81	88	3	233	26	15	28	29	1.96
65139210--65139390	82	2.2	81	83	2	229	27	15	27	29	1.96
65148061--65148104	15	2.9	16	80	16	58	59	9	0	31	1.29
65151820--65151864	22	2.0	23	86	8	65	68	2	4	24	1.19
65155014--65155045	16	2.1	16	94	5	57	3	6	6	84	0.86
65159038--65159088	25	2.0	25	88	7	77	33	21	9	35	1.86
65161307--65161363	28	2.0	28	96	0	105	28	24	19	28	1.98
65161879--65161916	19	2.0	19	94	0	67	42	18	0	39	1.50
65162409--65162442	14	2.5	13	86	9	50	17	17	11	52	1.73
65163365--65163413	24	2.1	23	84	3	62	51	8	4	36	1.51
65171430--65171531	51	2.0	51	100	0	204	37	17	17	27	1.93
65171549--65171657	33	3.2	34	66	21	82	38	18	22	21	1.93
65171375--65171590	120	1.8	120	84	4	301	39	16	19	23	1.92
65171481--65171785	69	4.4	69	83	1	326	37	19	20	21	1.94
65176001--65176452	225	2.0	227	95	0	809	35	11	16	36	1.85
65184705--65184839	66	2.0	66	92	0	225	28	8	20	42	1.82
65187298--65187461	74	2.2	72	80	4	177	36	11	15	35	1.84
65198241--65198296	22	2.4	22	88	8	76	37	1	0	60	1.07
65198236--65198299	24	2.7	24	81	11	87	37	1	0	60	1.06
65210285--65210668	176	2.2	172	86	5	522	34	20	19	26	1.96
65212702--65212749	17	2.9	17	81	12	64	39	2	0	58	1.10
65212693--65212751	24	2.4	25	81	13	70	37	1	0	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65212703--65212750	19	2.6	19	78	18	57	39	2	0	58	1.10
65217907--65217955	11	4.5	11	86	0	71	22	2	0	75	0.90
65217909--65217950	22	1.9	22	100	0	84	21	2	0	76	0.90
65223146--65223358	27	7.9	27	82	12	251	34	23	24	17	1.96
65223164--65223358	54	3.6	54	96	1	347	34	24	24	16	1.95
65224955--65225062	26	4.2	26	93	0	189	36	24	7	32	1.83
65228348--65228389	22	2.0	22	86	13	61	26	16	4	52	1.63
65229541--65229573	7	4.7	7	100	0	66	27	0	15	57	1.38
65230479--65230522	21	2.0	21	91	4	70	34	43	15	6	1.74
65233711--65234045	126	2.7	126	85	1	449	31	17	14	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297