Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  169  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56852818--56852919
37
2.8
36
82
5
114
23
21
11
43
1.85
56854069--56854140
36
2.0
36
100
0
144
19
30
22
27
1.98
56855888--56856152
49
5.6
49
71
10
176
26
27
19
27
1.99
56858053--56858148
48
2.0
47
93
2
165
43
10
14
30
1.79
56865058--56865083
9
2.9
9
100
0
52
80
19
0
0
0.71
56865673--56865697
11
2.3
11
100
0
50
16
0
0
84
0.63
56866685--56867007
86
3.8
85
74
9
238
21
21
20
35
1.96
56866936--56867044
43
2.6
42
83
1
119
20
18
22
38
1.93
56878450--56878475
9
2.9
9
100
0
52
80
19
0
0
0.71
56880818--56880915
42
2.3
43
89
1
144
31
25
22
20
1.98
56880894--56881002
44
2.5
44
90
3
166
30
16
15
37
1.90
56881052--56881144
47
2.0
47
97
0
177
50
24
5
19
1.68
56881753--56881781
13
2.1
14
93
6
51
55
10
0
34
1.34
56885045--56885451
88
4.8
84
77
13
343
30
20
11
37
1.87
56885130--56885348
78
2.7
79
83
10
268
28
21
11
37
1.88
56885130--56885451
169
2.0
160
84
9
416
29
21
11
37
1.89
56885620--56885655
18
1.9
18
88
5
54
50
2
8
38
1.47
56886040--56886183
7
20.1
7
69
12
69
36
40
2
21
1.65
56886039--56886182
50
2.9
50
81
7
157
36
39
2
22
1.66
56886084--56886182
43
2.3
43
84
6
121
35
40
2
22
1.65
56886246--56886293
14
3.4
14
82
0
60
43
31
2
22
1.65
56886255--56886299
14
3.2
14
83
0
54
46
28
2
22
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56886562--56886658
41
2.4
42
77
6
103
36
17
19
26
1.94
56886550--56886765
40
5.4
39
73
8
148
29
19
20
30
1.97
56887111--56887157
22
2.2
21
85
7
60
57
2
0
40
1.11
56887359--56887444
45
1.9
45
82
0
109
48
3
5
41
1.44
56888531--56888557
12
2.2
12
100
0
54
66
25
0
7
1.17
56893395--56893474
30
2.7
30
84
0
106
38
23
8
28
1.85
56894403--56894469
34
2.0
34
90
0
107
35
23
14
25
1.94
56901425--56901454
8
3.8
8
95
0
51
36
0
0
63
0.95
56901487--56901536
19
2.6
19
81
15
59
44
2
0
54
1.11
56901864--56901898
3
11.7
3
93
0
61
68
2
0
28
1.04
56903390--56903509
51
2.4
51
91
0
186
19
40
22
17
1.91
56911415--56911454
21
2.0
21
85
14
57
20
30
37
12
1.89
56912683--56912799
46
2.6
44
82
8
128
23
29
19
27
1.98
56919562--56919624
31
2.0
31
93
0
108
39
14
26
19
1.90
56920426--56920515
28
3.4
27
76
11
80
70
1
1
27
1.02
56920424--56920514
10
9.8
9
71
15
51
70
1
1
27
1.01
56920438--56920547
19
5.8
18
73
11
69
65
2
1
30
1.17
56920469--56920557
10
9.2
10
70
14
62
66
2
1
30
1.11
56920460--56920558
28
3.5
28
80
14
107
65
2
1
31
1.10
56920426--56920557
9
14.4
9
70
19
87
67
2
1
28
1.12
56920738--56920852
20
5.5
20
68
17
81
33
4
3
59
1.34
56920738--56920785
19
2.5
19
86
3
60
35
2
2
60
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56920825--56920918
9
9.7
9
76
9
53
32
2
2
62
1.19
56920825--56920916
10
9.3
10
73
10
64
32
2
2
63
1.19
56920825--56920910
20
4.3
20
76
8
77
34
2
1
61
1.16
56920884--56920940
30
1.9
29
89
10
89
33
0
3
63
1.12
56920908--56920956
20
2.4
21
83
6
57
30
2
8
59
1.38
56921806--56921839
17
1.9
18
88
5
52
29
38
0
32
1.58
56921803--56921916
55
2.1
54
86
6
158
22
33
0
42
1.60
56922647--56922694
16
3.1
15
90
6
69
64
2
2
31
1.16
56922643--56922698
24
2.3
24
81
6
69
66
1
1
30
1.12
56922643--56922694
8
6.5
8
82
8
61
65
1
1
30
1.14
56931041--56931355
158
2.0
158
98
0
603
23
27
13
36
1.91
56935439--56935491
18
3.3
18
68
29
55
26
3
47
22
1.68
56935344--56935524
30
6.0
30
87
1
222
21
3
47
27
1.68
56936460--56936500
20
2.0
20
85
0
55
34
4
4
56
1.42
56939240--56939326
42
2.1
42
97
0
165
33
22
8
35
1.84
56941454--56941492
21
1.9
19
85
10
51
74
2
7
15
1.15
56946188--56946448
47
5.6
45
71
14
199
27
18
30
23
1.98
56946188--56946453
94
2.8
94
77
13
280
27
19
30
23
1.98
56961347--56961395
21
2.3
21
83
16
66
61
0
0
38
0.96
56961922--56961977
24
2.2
24
81
12
60
46
0
0
53
1.00
56972317--56972363
20
2.3
20
92
7
78
36
10
19
34
1.86
56972411--56972506
25
3.8
26
84
5
135
25
23
22
28
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56972411--56972519
51
2.2
49
90
6
166
27
22
22
27
1.99
56972779--56972820
7
6.0
7
100
0
84
57
0
14
28
1.38
56981337--56981427
27
3.2
28
84
4
112
23
30
14
31
1.94
56987433--56987469
19
1.9
19
88
0
56
45
16
0
37
1.47
56993950--56993999
9
5.8
9
74
9
50
50
0
2
48
1.12
56993950--56993999
26
1.9
26
95
0
91
50
0
2
48
1.12
56995443--56995492
26
1.9
26
87
0
73
16
24
14
46
1.83
56996923--56996979
20
2.8
20
89
0
78
49
0
29
21
1.50
57003139--57003307
48
3.6
48
83
3
225
29
19
27
23
1.98
57003331--57003454
49
2.5
49
84
2
151
28
20
28
22
1.99
57003192--57003495
142
2.1
138
81
7
342
29
19
26
25
1.98
57009627--57009653
13
2.1
13
100
0
54
29
0
22
48
1.51
57010742--57010872
42
3.0
42
82
10
133
22
18
23
35
1.96
57011433--57011478
23
2.0
24
82
4
58
17
2
26
54
1.54
57016138--57016451
46
6.6
48
75
8
230
28
18
28
24
1.98
57016141--57016451
94
3.3
94
80
7
288
28
18
28
24
1.98
57016276--57016453
49
3.6
49
82
6
184
28
20
28
23
1.99
57019432--57019619
94
2.0
94
95
0
340
35
16
14
32
1.90
57028730--57028995
133
2.0
133
100
0
532
23
13
15
47
1.81
57033762--57033812
19
2.9
17
83
11
66
37
9
17
35
1.83
57033784--57033828
23
2.0
23
91
4
74
37
4
17
40
1.70
57046891--57046946
21
2.6
22
83
8
71
37
3
19
39
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57048715--57048751
10
3.7
10
92
7
58
21
2
16
59
1.49
57049316--57049660
171
2.0
172
89
2
532
39
13
10
37
1.78
57051117--57051155
5
7.8
5
94
0
69
0
2
17
79
0.84
57052168--57052236
28
2.4
29
87
2
104
23
14
33
28
1.94
57055789--57055819
16
1.9
16
93
0
53
48
12
22
16
1.80
57056042--57056132
29
3.2
30
87
9
129
23
15
32
28
1.95
57059674--57059704
16
1.9
16
93
0
53
41
19
29
9
1.83
57059927--57060017
28
3.2
28
83
9
105
24
15
31
28
1.95
57063583--57063608
10
2.6
10
100
0
52
61
0
38
0
0.96
57070786--57070903
43
2.8
42
82
5
139
20
16
30
33
1.94
57077359--57077709
47
7.4
47
95
1
603
32
7
29
29
1.86
57082128--57082232
43
2.5
43
81
4
115
17
17
33
32
1.93
57084593--57084637
19
2.4
19
85
7
56
57
8
0
33
1.30
57084684--57084716
17
1.9
17
100
0
66
69
6
0
24
1.10
57084972--57085018
15
3.2
15
79
11
53
70
2
0
27
0.99
57088877--57088942
31
2.1
31
97
0
123
39
27
6
27
1.80
57089091--57089260
91
1.8
93
85
6
238
22
29
20
27
1.98
57093565--57093801
39
6.1
39
97
0
447
23
30
25
20
1.98
57098131--57098395
47
5.7
47
75
13
194
23
29
20
27
1.98
57098179--57098398
46
4.7
46
79
6
212
23
30
20
26
1.98
57098225--57098402
94
1.9
92
89
2
275
23
30
20
25
1.98
57103608--57103827
47
4.7
45
80
10
203
23
29
20
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57103608--57103882
46
5.9
48
77
12
216
24
28
19
27
1.99
57104201--57104258
29
2.0
30
93
3
100
24
27
18
29
1.98
57110609--57110688
42
1.9
42
92
0
133
33
22
13
30
1.93
57111773--57111797
3
8.3
3
100
0
50
36
0
0
64
0.94
57114063--57114133
26
2.8
25
89
4
115
25
25
22
26
2.00
57114352--57114455
31
3.4
31
95
0
190
35
16
25
23
1.95
57115873--57115966
43
2.2
42
79
7
100
31
26
19
22
1.97
57120302--57120456
23
6.8
23
71
10
129
34
16
21
27
1.95
57120302--57120456
68
2.3
68
82
7
181
34
16
21
27
1.95
57120302--57120468
46
3.7
46
74
8
144
34
16
22
27
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297