Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  141  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48654882--48655096
122
1.8
118
84
7
292
28
8
14
47
1.75
48656775--48656809
3
11.7
3
93
0
61
31
2
0
65
1.07
48656757--48656812
21
2.8
20
84
10
71
26
1
1
69
1.08
48660557--48660600
19
2.3
19
84
4
52
29
20
4
45
1.71
48660726--48660778
12
4.4
12
72
9
54
50
16
24
7
1.71
48668038--48668074
3
12.3
3
94
0
65
70
0
29
0
0.88
48669019--48669154
45
3.0
45
68
18
111
33
16
23
25
1.96
48669264--48669514
44
5.7
43
78
9
247
28
18
22
30
1.97
48669221--48669464
88
2.8
90
78
10
261
27
20
23
28
1.99
48669238--48669514
133
2.1
133
81
8
330
29
17
24
28
1.97
48671191--48671228
3
12.7
3
88
0
58
34
2
0
63
1.09
48674776--48674943
18
9.5
17
88
5
237
36
13
11
38
1.80
48674776--48674952
35
5.0
35
96
2
309
37
13
10
38
1.80
48675424--48675570
78
1.9
79
91
4
244
34
21
8
36
1.83
48675602--48675804
82
2.5
82
92
0
325
51
15
5
27
1.67
48677207--48677243
9
4.0
9
89
3
56
21
0
10
67
1.21
48680949--48681005
25
2.3
25
81
6
71
52
1
0
45
1.11
48681402--48681469
32
2.1
32
100
0
136
29
20
5
44
1.75
48682305--48682366
30
2.1
30
93
0
106
29
3
12
54
1.53
48682488--48682518
11
2.8
11
90
0
53
67
0
0
32
0.91
48685557--48685710
43
3.6
42
77
10
143
25
17
25
31
1.97
48690279--48690313
9
3.7
9
88
11
52
60
0
2
37
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48690524--48690710
103
1.8
102
85
1
266
30
21
21
26
1.98
48697010--48697083
33
2.2
34
80
7
87
29
20
28
21
1.98
48697975--48698057
38
2.2
38
93
2
139
30
15
10
43
1.81
48704671--48704709
20
2.0
20
85
10
53
61
17
2
17
1.46
48706358--48706507
34
4.5
34
82
2
162
41
12
13
33
1.81
48706358--48706507
68
2.3
65
84
3
183
41
12
13
33
1.81
48707211--48707245
13
2.8
13
86
4
54
62
0
34
2
1.10
48707796--48707902
20
5.8
18
70
22
62
52
3
2
41
1.34
48707796--48707903
37
2.9
36
78
16
107
52
3
2
40
1.33
48710370--48710419
12
4.1
12
72
23
50
48
0
2
50
1.12
48710375--48710415
21
2.0
21
85
4
57
46
0
2
51
1.14
48710489--48710565
37
2.1
37
83
9
95
54
2
2
40
1.28
48713477--48713535
10
5.9
10
84
7
84
67
1
8
22
1.26
48714153--48714192
15
2.6
16
88
4
64
2
15
0
82
0.77
48714155--48714201
14
3.4
13
85
8
58
2
12
0
85
0.70
48714221--48714399
99
1.8
99
86
0
259
31
26
15
26
1.96
48715609--48715668
6
9.0
7
81
17
58
71
0
5
23
1.05
48715606--48715668
16
3.8
16
74
16
56
73
0
4
22
1.02
48715606--48715664
19
2.9
19
72
18
57
72
0
5
22
1.03
48718307--48718371
10
6.3
10
74
13
51
69
4
3
23
1.21
48718733--48718777
19
2.4
19
96
0
81
60
6
6
26
1.47
48725874--48727353
23
64.7
23
75
9
1102
37
24
6
31
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48725869--48727040
183
6.4
183
82
6
912
37
24
6
31
1.81
48726043--48727296
229
5.5
229
89
3
1642
37
24
6
31
1.81
48725875--48727353
206
7.2
206
79
8
1148
37
24
6
31
1.81
48726909--48727313
114
3.5
114
86
5
491
37
24
6
31
1.80
48730262--48730317
29
2.0
28
83
16
71
53
5
3
37
1.41
48730754--48730801
15
3.3
15
85
2
62
43
37
0
18
1.51
48730757--48730830
22
3.4
21
74
5
67
45
29
1
22
1.61
48730837--48730887
7
7.6
7
82
8
61
31
27
11
29
1.92
48730835--48730901
33
2.0
33
97
0
125
32
26
10
29
1.90
48731388--48731789
155
2.6
154
90
2
619
33
21
19
26
1.97
48731699--48731831
39
3.3
39
79
7
124
29
24
20
26
1.99
48736183--48736207
13
1.9
13
100
0
50
48
16
0
36
1.46
48741799--48741930
37
3.6
36
71
22
112
29
14
19
36
1.91
48741800--48741958
74
2.1
74
95
0
282
29
13
19
37
1.91
48741837--48741955
37
3.2
37
73
13
127
27
13
21
37
1.91
48748203--48748760
47
11.7
47
98
0
1035
32
8
29
29
1.86
48748762--48749129
37
9.9
37
98
0
700
24
19
34
22
1.96
48750250--48750302
25
2.1
25
96
0
97
37
3
24
33
1.74
48750427--48750818
40
9.8
40
89
0
577
25
21
26
26
1.99
48755026--48755111
37
2.3
37
91
0
136
22
19
32
25
1.97
48759076--48759104
15
1.9
15
100
0
58
37
0
0
62
0.96
48762419--48762468
21
2.5
21
81
15
61
34
10
12
44
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48766057--48766149
46
2.0
47
89
8
145
29
22
7
40
1.81
48769957--48770104
43
3.5
41
77
10
120
26
17
26
29
1.98
48769979--48770091
41
2.7
43
79
8
133
27
16
26
29
1.97
48786678--48786721
11
4.0
11
96
0
70
59
9
13
18
1.60
48786767--48786814
23
2.2
22
85
7
62
45
14
14
25
1.83
48786853--48786882
14
2.1
15
93
6
53
0
43
0
56
0.99
48790154--48790318
43
3.8
43
75
10
149
24
16
25
32
1.96
48796116--48796227
25
4.5
25
80
0
98
38
21
14
25
1.91
48800680--48800706
12
2.2
12
100
0
54
51
7
0
40
1.30
48801153--48801250
27
3.5
28
90
2
135
26
13
28
31
1.94
48801181--48801263
27
3.0
27
87
5
96
30
12
25
32
1.92
48812285--48812375
46
2.0
46
95
0
164
39
18
14
27
1.89
48818996--48819093
27
3.5
28
90
2
135
26
13
28
31
1.94
48819024--48819106
27
3.0
27
87
5
96
30
12
25
32
1.92
48824615--48824649
17
2.1
17
100
0
70
37
22
11
28
1.89
48829907--48830057
42
3.7
42
84
4
191
24
15
28
31
1.95
48830035--48830094
28
2.1
28
84
0
75
30
10
30
30
1.90
48841855--48842026
93
1.8
93
94
0
308
27
30
21
20
1.98
48841847--48842022
46
3.8
46
81
10
214
28
29
21
21
1.98
48844423--48844511
30
3.0
30
80
8
101
57
15
16
10
1.65
48844423--48844502
15
5.4
15
80
7
92
58
13
17
10
1.62
48844434--48844511
15
5.2
15
78
9
79
56
15
16
11
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48848102--48848150
24
1.9
27
88
12
77
40
4
6
48
1.47
48852826--48852855
12
2.5
12
100
0
60
63
10
6
20
1.47
48859170--48860123
477
2.0
477
100
0
1908
28
15
30
26
1.96
48863711--48863769
27
2.1
29
81
6
68
11
10
5
72
1.25
48863818--48863862
20
2.1
23
88
12
69
37
0
0
62
0.96
48863841--48863877
12
2.9
14
80
19
53
37
2
0
59
1.12
48863908--48864129
45
4.1
56
63
26
127
40
3
4
51
1.38
48863800--48864288
159
3.1
159
97
0
924
41
3
3
51
1.35
48864136--48864180
20
2.1
23
88
12
69
37
0
0
62
0.96
48864159--48864195
12
2.9
14
80
19
53
37
2
0
59
1.12
48864729--48864796
21
3.1
21
85
6
82
55
1
0
42
1.08
48864743--48864803
21
3.0
20
81
9
70
57
3
0
39
1.15
48864804--48864874
23
3.1
22
82
8
88
50
4
0
45
1.21
48864786--48864889
47
2.2
48
84
5
140
55
3
0
40
1.18
48864933--48864966
16
2.1
16
89
10
52
82
0
11
5
0.83
48868219--48868278
24
2.5
24
86
5
77
21
43
5
30
1.74
48879643--48879863
46
4.7
47
80
9
197
25
29
18
26
1.98
48888824--48888895
25
2.9
25
80
13
85
33
0
1
65
1.02
48888824--48888888
26
2.4
25
82
10
76
32
0
1
66
1.01
48889097--48889132
17
2.1
17
90
10
56
5
27
30
36
1.80
48889224--48889290
11
6.6
10
73
19
50
70
0
29
0
0.88
48889237--48889288
17
2.8
20
77
17
56
71
0
28
0
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48889224--48889288
23
2.8
23
81
11
71
69
0
30
0
0.89
48895775--48895819
24
1.9
23
86
4
63
15
17
17
48
1.81
48895886--48896015
27
4.8
27
86
0
143
28
26
24
20
1.99
48896051--48896110
28
2.2
27
85
8
77
68
1
0
30
0.99
48896051--48896110
27
2.2
28
85
8
79
68
1
0
30
0.99
48897601--48897630
15
2.0
15
93
0
51
63
0
0
36
0.95
48900639--48900680
10
4.3
10
81
3
50
76
2
0
21
0.90
48901135--48901177
19
2.3
19
87
0
59
16
4
2
76
1.05
48904644--48904789
29
5.2
28
75
8
109
66
3
2
27
1.21
48904646--48904789
9
15.4
9
69
18
73
65
3
2
27
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297