genome.fa.s25.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  183  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61759956--61760177	93	2.4	94	79	6	236	29	17	28	24	1.97
61759914--61760171	140	1.8	140	82	4	333	29	16	28	25	1.97
61761069--61761131	28	2.3	28	97	2	119	12	22	49	15	1.79
61763826--61763964	42	3.2	41	78	10	127	36	23	13	25	1.92
61764540--61764606	32	2.1	32	100	0	134	31	25	0	43	1.55
61771051--61771222	43	4.0	44	76	13	160	31	27	16	24	1.96
61774659--61774694	3	11.7	3	94	5	63	33	0	0	66	0.92
61778081--61778123	3	14.3	3	100	0	86	32	0	0	67	0.91
61778188--61778214	6	4.5	6	100	0	54	33	0	37	29	1.58
61782152--61782270	46	2.6	45	82	4	148	27	16	21	33	1.95
61783798--61783832	7	5.0	7	100	0	70	57	0	14	28	1.38
61784971--61785078	26	4.2	26	93	0	189	32	7	24	36	1.83
61802026--61802174	23	6.4	22	80	6	102	27	19	18	34	1.95
61802026--61802152	23	5.5	22	75	11	105	26	18	17	37	1.93
61802026--61802152	46	2.8	44	82	7	137	26	18	17	37	1.93
61802595--61802658	32	2.0	32	93	0	110	39	18	15	26	1.91
61809694--61809812	46	2.6	45	82	4	148	27	16	21	33	1.95
61811340--61811374	7	5.0	7	100	0	70	57	0	14	28	1.38
61812513--61812568	26	2.2	26	96	0	103	30	7	25	37	1.82
61814361--61814449	46	1.9	46	97	0	169	22	5	28	43	1.75
61814371--61814471	46	2.2	44	84	10	123	23	9	25	40	1.85
61818539--61818744	40	5.2	40	91	1	299	23	21	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61826045--61826455	40	10.3	40	98	0	786	22	20	27	29	1.99
61837342--61837449	26	4.2	26	91	0	180	33	7	23	36	1.83
61847312--61847361	22	2.3	22	86	3	66	14	26	36	24	1.93
61849564--61849643	38	2.1	39	81	6	92	18	17	28	35	1.94
61855261--61855293	16	1.9	18	88	11	52	51	18	12	18	1.76
61855768--61855899	45	3.0	45	93	1	212	25	28	22	22	1.99
61867075--61867138	32	2.0	32	93	0	110	26	15	18	39	1.91
61867559--61867696	23	5.8	24	78	10	117	35	18	19	26	1.95
61867580--61867696	46	2.5	46	79	10	139	38	17	18	25	1.92
61867647--61867707	23	2.7	23	81	0	68	39	16	18	26	1.91
61867586--61867717	69	1.9	69	83	6	169	35	17	19	27	1.94
61874770--61875135	40	9.2	40	92	2	476	24	21	26	28	1.99
61874770--61875102	120	2.8	120	89	4	546	23	21	26	28	1.99
61882085--61882127	22	2.0	22	100	0	86	32	0	20	46	1.51
61883786--61884008	39	5.7	39	90	1	322	30	28	22	18	1.98
61884081--61884162	28	2.9	28	81	0	92	29	23	10	36	1.89
61889825--61889889	28	2.3	28	94	0	112	33	27	7	30	1.85
61890005--61890085	28	2.9	28	85	5	110	23	23	20	32	1.98
61890544--61890584	19	2.2	19	86	0	55	17	0	7	75	1.02
61897716--61897780	28	2.3	28	91	0	103	35	26	7	30	1.84
61897886--61897976	28	3.2	27	84	7	103	23	23	23	30	1.99
61897896--61897987	28	3.2	28	87	4	123	23	27	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61897896--61898001	56	1.9	55	83	11	135	21	25	19	33	1.97
61898435--61898475	19	2.2	19	86	0	55	17	0	7	75	1.02
61901099--61901398	39	7.7	39	89	1	433	29	29	22	19	1.98
61901471--61901543	28	2.6	28	84	0	101	28	21	9	39	1.85
61902982--61903076	45	2.1	45	88	1	138	32	27	5	34	1.79
61903057--61903124	16	4.2	16	96	0	118	35	36	0	27	1.58
61906934--61907021	32	2.8	31	74	5	86	52	17	3	27	1.60
61911506--61912116	305	2.0	305	99	0	1213	40	20	11	28	1.87
61915807--61915864	26	2.2	26	93	0	98	34	5	24	36	1.78
61921578--61921766	95	2.0	95	98	0	369	21	17	20	40	1.91
61924598--61924742	40	3.6	40	84	4	184	24	26	24	25	2.00
61928035--61928164	47	2.8	47	86	0	179	33	7	31	27	1.85
61932239--61932275	16	2.2	17	86	13	51	62	5	0	32	1.18
61932724--61932754	13	2.3	14	94	5	55	38	0	0	61	0.96
61933175--61933207	16	2.1	16	94	0	57	27	12	21	39	1.88
61940868--61940955	27	3.3	24	73	20	61	27	23	7	40	1.82
61940987--61941063	27	2.9	27	75	11	77	40	20	9	29	1.83
61941092--61941147	27	2.1	26	83	9	69	37	12	12	37	1.81
61942047--61942116	25	2.8	24	91	4	104	24	28	24	22	1.99
61942046--61942129	25	3.4	24	83	8	98	27	25	23	23	2.00
61942264--61942355	42	2.2	42	92	0	148	29	14	21	34	1.93
61942410--61942482	29	2.5	29	93	0	119	31	26	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61947272--61947300	12	2.3	13	94	5	51	27	0	27	44	1.54
61947563--61947712	55	2.7	55	79	6	180	22	26	18	34	1.96
61954310--61954350	20	2.0	20	100	0	82	51	9	14	24	1.72
61969431--61969521	47	1.9	47	86	4	130	45	17	19	17	1.86
61970676--61972013	180	7.5	180	85	3	1618	30	17	23	28	1.97
61973537--61973564	10	2.8	10	100	0	56	0	0	7	92	0.37
61977872--61977902	16	1.9	16	93	0	53	35	22	0	41	1.54
61977869--61977908	20	2.0	20	85	0	53	37	22	0	40	1.54
61978094--61978348	55	4.8	53	80	9	245	21	25	17	36	1.95
61978141--61978341	108	1.8	110	90	4	327	22	25	17	34	1.96
61983288--61983350	33	1.9	33	96	0	117	38	12	11	38	1.79
61986047--61986142	42	2.3	42	85	3	131	14	20	19	44	1.86
61986064--61986145	21	3.9	21	75	0	65	13	19	20	46	1.83
61989931--61989985	23	2.4	24	80	20	64	23	3	1	70	1.12
61989928--61989997	24	2.9	24	74	21	67	24	2	1	71	1.08
61991530--61991571	18	2.3	19	84	12	52	78	7	2	11	1.04
61991615--61991679	30	2.3	27	82	17	80	58	4	0	36	1.19
61995874--61995908	18	2.0	18	88	5	54	42	0	2	54	1.15
61996081--61996110	3	10.0	3	100	0	60	33	0	0	66	0.92
62008346--62008523	27	6.6	27	83	3	205	26	15	28	29	1.96
62008347--62008502	82	1.9	81	88	3	233	26	15	28	29	1.96
62008343--62008523	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62024090--62024122	13	2.6	13	95	4	59	54	15	0	30	1.41
62032076--62032149	21	3.5	21	81	0	76	35	8	32	24	1.85
62032604--62032636	16	2.1	16	94	0	57	24	15	6	54	1.63
62040068--62040099	15	2.1	15	100	0	64	37	31	12	18	1.88
62048193--62048224	15	2.1	15	100	0	64	37	31	12	18	1.88
62057029--62057062	13	2.6	13	95	0	59	32	35	26	5	1.81
62058581--62058605	13	1.9	13	100	0	50	16	4	16	64	1.44
62059297--62059418	47	2.6	47	81	11	142	30	18	27	23	1.97
62059297--62059561	46	5.6	47	76	11	181	28	18	29	23	1.98
62069812--62069880	27	2.5	28	95	2	122	26	13	28	31	1.93
62069812--62069893	27	3.0	27	87	5	94	29	12	25	32	1.92
62072264--62072341	27	2.9	27	79	11	88	21	20	21	35	1.96
62072359--62072815	27	16.8	27	79	4	233	33	8	20	37	1.84
62072443--62072637	81	2.4	81	85	4	268	30	8	21	39	1.83
62072726--62072830	27	3.9	27	78	9	81	34	8	17	40	1.80
62079086--62079169	16	5.1	16	74	8	78	44	1	0	54	1.07
62079086--62079164	8	9.5	8	79	8	68	44	1	0	54	1.08
62079086--62079176	8	10.9	8	77	9	65	45	1	0	53	1.07
62079212--62079258	20	2.3	20	96	0	85	34	21	6	38	1.79
62082552--62082606	20	2.8	20	83	5	58	23	5	32	38	1.78
62085183--62085315	70	1.9	70	80	6	153	51	7	10	30	1.64
62086182--62086251	26	2.7	26	77	2	77	51	14	2	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62088397--62088467	26	2.7	25	81	14	72	54	1	1	42	1.17
62091366--62091450	38	2.2	38	95	0	152	29	36	10	23	1.88
62092700--62092776	38	2.0	38	100	0	154	20	15	32	31	1.94
62094361--62094460	49	2.0	50	94	1	175	34	10	21	35	1.86
62141072--62141116	23	1.9	24	86	13	67	28	0	2	68	1.01
62145538--62145621	29	2.9	29	85	0	114	51	4	19	25	1.66
62151410--62151447	19	2.0	19	94	0	67	31	5	23	39	1.77
62158755--62158823	33	2.1	33	86	2	95	40	2	17	39	1.64
62160710--62160848	40	3.5	40	74	14	119	30	22	19	28	1.98
62161380--62161433	28	1.9	28	85	7	74	38	24	3	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297