genome.fa.s25.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  190  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64345054--64345089	17	2.1	17	89	5	54	16	44	27	11	1.82
64350850--64350986	24	5.8	24	72	14	113	18	21	21	39	1.93
64350909--64350977	21	3.1	21	84	11	93	18	24	18	37	1.94
64369137--64369188	22	2.4	22	87	3	79	40	1	3	53	1.30
64369137--64369196	22	2.7	22	84	5	68	36	1	8	53	1.41
64369825--64369899	38	2.0	38	89	5	116	57	10	12	20	1.64
64374162--64374204	3	14.3	3	85	0	59	62	2	4	30	1.28
64375906--64376804	44	20.0	44	75	7	685	30	19	16	34	1.94
64375986--64376269	96	3.0	96	81	6	325	30	20	14	33	1.93
64375944--64376477	229	2.4	228	81	6	602	30	20	15	34	1.93
64375906--64376804	178	5.0	176	77	7	680	30	19	16	34	1.94
64376375--64376804	229	1.9	229	85	0	599	29	18	17	34	1.94
64375905--64376804	407	2.2	407	85	0	1185	30	19	16	34	1.94
64383720--64383892	86	2.0	86	95	0	310	20	21	22	35	1.96
64384874--64384925	19	2.7	20	85	11	65	42	5	21	30	1.76
64385291--64385330	21	1.9	21	94	0	71	10	27	7	55	1.60
64385714--64385785	21	3.3	21	65	24	58	20	38	0	40	1.53
64385707--64385797	45	2.0	45	100	0	182	19	39	0	40	1.52
64385726--64385800	24	3.2	24	65	24	70	18	40	0	41	1.51
64390025--64390049	5	5.0	5	100	0	50	80	0	0	20	0.72
64391429--64391483	3	18.3	3	88	0	83	63	1	3	30	1.22
64391669--64391732	4	16.5	4	72	18	55	71	1	4	21	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64395280--64395387	53	2.0	53	87	0	153	17	25	18	38	1.92
64401835--64402038	53	3.8	54	78	1	212	20	24	18	36	1.95
64405198--64405249	23	2.3	23	86	3	70	61	1	0	36	1.07
64408101--64408247	43	3.5	43	76	9	149	25	27	19	27	1.98
64415721--64415745	7	3.6	7	100	0	50	28	0	12	60	1.32
64417448--64417679	40	5.8	40	93	1	376	25	29	21	24	1.99
64419653--64419695	18	2.4	18	92	0	68	20	27	9	41	1.83
64419943--64420013	21	3.4	21	82	0	79	35	43	14	7	1.72
64423264--64423599	126	2.7	126	83	6	439	27	17	17	36	1.93
64425535--64425598	30	2.1	30	91	0	101	21	42	23	12	1.87
64440843--64440903	5	11.0	5	86	13	68	19	0	1	78	0.83
64440844--64440921	6	13.5	6	85	4	83	16	1	3	78	0.97
64440844--64440904	25	2.6	25	87	12	87	18	0	1	80	0.80
64442819--64442918	29	3.5	29	84	1	130	26	17	31	26	1.97
64442804--64442918	29	4.0	29	82	6	128	27	15	29	26	1.96
64442819--64442927	57	1.9	58	88	1	166	26	16	31	25	1.97
64448953--64449060	26	4.2	26	98	0	207	36	25	7	30	1.84
64451554--64451604	25	2.0	25	96	0	93	27	1	25	45	1.64
64453307--64453557	47	5.3	47	71	14	137	30	19	27	22	1.98
64453339--64453563	47	4.8	47	74	8	188	29	18	28	22	1.98
64460176--64460200	13	1.9	13	100	0	50	16	4	16	64	1.44
64461011--64461139	48	2.6	51	85	6	167	31	19	27	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64465656--64465694	20	2.0	20	90	10	62	12	5	30	51	1.62
64481282--64481318	2	18.5	2	100	0	74	51	48	0	0	1.00
64482246--64482304	25	2.4	25	80	8	77	33	15	15	35	1.89
64483685--64483717	9	3.7	9	84	15	50	24	9	24	42	1.83
64483767--64483803	9	4.1	9	92	0	65	45	13	10	29	1.77
64486532--64486570	20	2.0	20	94	0	69	20	12	17	48	1.80
64487574--64487663	45	2.0	45	97	0	171	55	3	6	34	1.42
64496278--64496302	2	12.5	2	100	0	50	52	0	48	0	1.00
64502028--64502060	17	1.9	17	93	0	57	21	6	0	72	1.05
64508748--64509054	89	3.4	88	71	15	239	31	16	21	30	1.95
64508705--64509355	44	14.4	44	72	12	331	31	15	21	32	1.94
64508837--64509149	94	3.4	94	74	12	313	30	15	22	30	1.95
64508745--64509149	183	2.2	183	90	0	623	31	15	21	31	1.94
64508745--64509222	183	2.6	183	86	3	552	31	15	20	31	1.94
64509155--64509355	89	2.3	88	83	7	246	30	14	19	34	1.92
64509113--64509414	133	2.3	133	81	6	328	30	14	20	33	1.93
64511147--64511179	17	1.9	17	93	0	57	21	6	0	72	1.05
64524099--64524139	20	2.0	20	82	17	50	58	2	0	39	1.11
64526582--64526616	17	2.1	16	89	5	52	22	0	5	71	1.07
64538724--64538772	18	2.6	19	83	3	64	44	2	0	53	1.12
64538752--64538806	26	2.1	26	83	16	69	32	0	1	65	1.03
64542936--64543028	46	2.0	46	97	0	177	47	18	4	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64562250--64562583	144	2.3	144	79	2	366	24	29	18	27	1.98
64562250--64562570	48	6.7	48	77	5	299	23	29	19	27	1.98
64568634--64568715	32	2.6	30	86	7	101	40	3	6	50	1.45
64577947--64578074	51	2.5	51	94	1	220	16	22	10	50	1.74
64584127--64584225	40	2.5	39	82	6	121	16	12	38	33	1.85
64585343--64585415	32	2.3	30	84	11	85	36	2	6	53	1.42
64587115--64587143	5	6.0	5	92	8	51	79	0	0	20	0.74
64594824--64594852	14	2.1	14	100	0	58	34	6	31	27	1.83
64594917--64594967	21	2.4	21	96	0	93	27	0	13	58	1.36
64605776--64605802	14	1.9	14	100	0	54	74	0	7	18	1.05
64609387--64609571	79	2.3	82	84	7	238	25	27	22	24	2.00
64609368--64609571	40	5.1	40	82	8	238	25	27	22	25	2.00
64617360--64617544	79	2.3	82	84	7	238	25	27	22	24	2.00
64617341--64617544	40	5.1	40	82	8	238	25	27	22	25	2.00
64621724--64621894	46	3.7	47	82	10	151	25	29	18	27	1.98
64626841--64626883	20	2.2	20	100	0	86	11	11	18	58	1.63
64628067--64628398	166	2.0	166	98	0	646	41	12	16	30	1.84
64629184--64629783	297	2.0	297	99	0	1191	38	10	15	36	1.81
64633446--64633508	29	2.2	29	85	5	83	65	1	0	33	1.03
64634639--64634697	26	2.2	26	77	16	68	47	0	3	49	1.18
64639707--64639854	72	2.1	72	100	0	296	35	13	12	39	1.82
64641742--64641784	22	2.0	22	90	0	68	55	6	13	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64641749--64641799	22	2.3	22	80	6	59	56	5	17	19	1.61
64643356--64643392	15	2.6	14	91	4	56	62	0	2	35	1.10
64643501--64643546	17	2.7	18	76	10	51	56	0	2	41	1.11
64644229--64644268	14	2.9	15	78	14	50	75	5	10	10	1.19
64644933--64645128	45	4.2	45	69	13	130	28	25	15	30	1.96
64650222--64650271	18	2.5	19	81	15	57	50	4	2	44	1.32
64685100--64685157	29	2.0	29	93	0	98	17	17	24	41	1.90
64686876--64686912	15	2.6	14	91	4	56	62	0	2	35	1.10
64687017--64687067	20	2.7	20	74	22	56	58	0	3	37	1.16
64692791--64692845	27	2.0	28	89	3	85	27	12	27	32	1.93
64697566--64697774	46	4.5	46	77	8	194	25	28	17	28	1.97
64697604--64697776	94	1.9	92	84	4	231	25	27	18	28	1.98
64705328--64705498	46	3.7	46	78	7	150	24	28	18	29	1.98
64710443--64710481	19	2.1	19	85	0	51	30	20	10	38	1.86
64710457--64710494	19	2.0	20	84	5	51	28	21	15	34	1.94
64721467--64721504	19	2.0	19	94	0	67	44	36	7	10	1.68
64723595--64723705	53	2.1	54	94	1	197	45	9	16	27	1.79
64724483--64724511	9	3.0	10	90	10	51	20	20	0	58	1.39
64733530--64733559	15	2.0	15	93	0	51	30	0	0	70	0.88
64733606--64733632	12	2.2	12	100	0	54	22	0	7	70	1.12
64733566--64733762	80	2.4	82	87	3	274	28	3	5	62	1.32
64733907--64733938	16	2.0	17	88	11	50	65	3	0	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64733879--64734072	49	4.0	47	68	19	119	60	5	1	31	1.29
64733843--64734050	81	2.5	83	74	16	214	59	6	2	32	1.35
64734038--64734063	13	2.0	13	100	0	52	53	0	0	46	1.00
64741535--64741574	18	2.3	17	82	4	53	20	0	37	42	1.52
64749474--64749527	27	2.0	27	82	13	67	40	0	5	53	1.24
64749537--64749591	24	2.3	24	75	3	58	25	3	16	54	1.58
64752751--64752852	44	2.3	44	89	1	161	28	22	15	33	1.95
64754431--64754464	14	2.4	14	90	0	50	20	0	35	44	1.52
64758190--64758365	46	3.8	46	74	18	166	31	27	18	22	1.97
64762694--64762810	51	2.3	51	90	0	180	34	16	22	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297