genome.fa.s25.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  132  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45399305--45400455	470	2.4	470	99	0	2293	36	11	11	41	1.77
45400164--45400203	21	1.9	21	94	0	71	30	10	12	47	1.74
45406402--45407023	43	14.5	43	82	6	715	26	18	22	32	1.97
45406402--45407023	130	4.8	130	87	3	780	26	18	22	32	1.97
45418265--45418290	12	2.2	12	100	0	52	23	0	0	76	0.78
45418695--45418736	22	1.9	22	85	0	57	61	2	2	33	1.21
45421866--45421940	33	2.2	32	80	13	80	50	0	2	46	1.15
45422390--45422442	20	2.6	21	82	5	65	47	0	0	52	1.00
45422377--45422444	21	3.3	21	78	10	70	47	1	0	51	1.09
45424147--45424202	27	2.0	29	86	6	80	39	7	5	48	1.54
45432423--45432698	86	3.2	85	68	18	242	24	19	21	34	1.97
45432371--45432747	175	2.2	175	91	0	612	25	20	20	33	1.97
45432475--45432831	93	4.0	92	71	18	232	24	20	22	32	1.98
45441330--45442259	484	1.9	484	95	0	1698	18	28	15	37	1.91
45445286--45445318	8	4.2	8	88	7	50	66	0	0	33	0.92
45445280--45445318	20	2.0	20	89	0	60	66	0	0	33	0.92
45445833--45445857	13	1.9	13	100	0	50	40	16	0	44	1.47
45453864--45453916	26	2.0	26	96	0	97	11	30	9	49	1.70
45454261--45454345	16	5.5	15	71	12	64	4	10	21	63	1.44
45454270--45454441	32	5.5	31	72	16	131	8	8	20	62	1.48
45454261--45454459	63	3.2	63	93	0	328	7	9	20	62	1.50
45454299--45454452	15	9.9	15	71	14	91	7	9	20	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45456813--45456911	49	2.0	49	100	0	198	37	2	6	54	1.37
45456832--45456908	23	3.2	23	67	22	68	37	1	3	57	1.26
45456832--45456911	26	3.2	26	69	16	87	37	1	3	57	1.25
45465995--45467055	47	22.5	47	95	0	1809	29	30	8	31	1.87
45469816--45470111	127	2.3	127	92	1	477	26	17	19	36	1.94
45481831--45482255	45	9.5	44	73	10	274	29	19	22	28	1.98
45481830--45482305	135	3.5	135	88	1	654	30	19	22	27	1.98
45484901--45485226	127	2.6	127	88	2	467	27	15	19	37	1.92
45487985--45488261	89	3.0	89	93	4	446	28	9	24	37	1.86
45492343--45492391	12	3.8	12	82	12	53	79	0	20	0	0.73
45492348--45492398	7	7.6	7	80	14	54	76	0	21	1	0.88
45492343--45492398	20	2.8	20	84	7	71	78	0	19	1	0.84
45493614--45494052	44	10.0	43	63	15	157	29	20	25	23	1.99
45493607--45494055	132	3.4	132	96	0	844	30	20	25	23	1.99
45497336--45497373	20	1.9	20	88	0	58	36	10	0	52	1.36
45499800--45499859	27	2.2	27	90	0	93	43	21	18	16	1.88
45500010--45500083	26	2.8	25	89	4	103	18	22	18	39	1.93
45500022--45500086	26	2.5	26	94	0	112	16	24	21	36	1.94
45503685--45503728	23	1.9	23	86	9	63	38	13	15	31	1.87
45503685--45503739	23	2.4	23	81	6	58	40	10	16	32	1.83
45504353--45504424	21	3.4	22	70	14	69	61	6	26	5	1.44
45504347--45504430	42	2.0	42	95	0	150	57	8	25	9	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45505328--45505365	16	2.4	16	95	0	67	26	2	0	71	1.00
45510212--45510301	28	3.1	29	79	7	85	70	7	7	14	1.34
45510212--45510301	30	3.1	28	79	6	90	70	7	7	14	1.34
45512401--45512848	87	5.1	87	81	5	417	27	21	26	24	1.99
45512631--45512771	43	3.3	43	73	2	147	25	26	24	22	2.00
45512648--45512798	43	3.5	42	72	3	131	26	21	28	23	1.99
45514544--45514593	17	3.1	17	78	13	52	30	0	6	64	1.18
45514546--45514596	15	3.2	16	83	5	59	31	0	3	64	1.11
45515512--45515831	159	2.0	159	96	0	586	35	18	6	39	1.77
45521413--45521661	50	4.8	50	85	4	284	20	29	24	26	1.99
45521412--45521661	100	2.4	104	88	6	357	20	29	24	26	1.99
45521756--45521787	13	2.5	13	94	0	55	56	12	0	31	1.37
45521999--45522056	30	1.9	30	86	6	82	31	25	3	39	1.73
45522732--45522757	13	2.0	13	100	0	52	46	15	7	30	1.74
45528882--45528924	22	1.9	23	90	4	70	65	4	20	9	1.40
45528882--45528929	22	2.2	22	85	7	62	66	6	18	8	1.39
45529856--45529917	3	19.7	3	77	9	61	25	4	1	67	1.19
45529856--45529924	24	3.0	22	85	8	84	24	4	1	69	1.15
45530067--45530096	15	1.9	16	93	6	53	16	16	6	60	1.56
45530930--45530987	30	1.9	30	89	0	89	31	24	3	41	1.71
45531848--45531883	17	2.1	18	89	5	56	69	5	2	22	1.22
45552366--45552458	44	2.1	45	88	6	136	34	3	24	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45552552--45552678	37	3.6	37	78	11	115	49	3	1	44	1.30
45552602--45552682	38	2.1	37	82	8	92	49	3	1	45	1.27
45553511--45553569	30	2.0	30	96	3	111	27	22	20	30	1.98
45557640--45557707	23	3.0	23	75	16	61	17	16	23	42	1.88
45559344--45559403	30	2.0	30	93	0	102	23	3	16	56	1.55
45559486--45559525	18	2.1	18	86	9	53	22	0	12	65	1.26
45573128--45573187	24	2.5	24	83	5	68	15	1	31	51	1.53
45575314--45575411	40	2.5	40	96	0	178	29	20	22	27	1.98
45579354--45579392	10	3.8	10	86	6	60	74	0	0	25	0.82
45579357--45579387	11	2.8	11	100	0	62	74	0	0	25	0.82
45584222--45584274	27	1.9	28	88	11	83	56	13	9	20	1.64
45585941--45585974	7	4.9	7	88	0	50	32	32	0	35	1.58
45585941--45585985	14	3.3	14	90	3	65	33	33	0	33	1.58
45585940--45585980	21	2.0	21	85	0	55	31	36	0	31	1.58
45585978--45586039	7	8.9	7	77	7	63	37	6	0	56	1.25
45585981--45586044	20	3.0	21	84	9	76	35	9	0	54	1.33
45588650--45588742	25	3.7	25	76	11	91	29	21	23	25	1.99
45591189--45591294	52	2.0	52	100	0	212	26	9	9	54	1.63
45593420--45593470	24	2.1	24	92	0	84	13	33	31	21	1.92
45596506--45596647	40	3.5	40	86	5	180	49	4	23	22	1.69
45596615--45596661	24	2.0	24	86	0	67	57	6	21	14	1.60
45602569--45602808	73	3.3	70	79	11	229	27	20	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45602576--45602989	35	11.4	36	76	11	283	26	21	14	38	1.92
45602616--45602989	73	5.1	72	74	9	303	25	21	14	37	1.92
45602621--45602989	110	3.4	108	75	12	335	25	20	15	38	1.92
45602621--45602989	38	10.1	39	72	15	195	25	20	15	38	1.92
45604241--45604276	13	2.8	13	95	4	65	41	47	0	11	1.39
45604232--45604295	30	2.1	31	94	2	112	40	42	0	17	1.49
45604276--45604405	52	3.0	38	71	25	107	50	28	3	18	1.62
45604271--45604385	52	2.2	52	93	4	198	46	33	1	18	1.59
45604328--45604405	38	2.0	39	90	2	122	52	25	3	17	1.62
45604540--45604602	17	3.5	17	69	12	54	34	3	12	49	1.57
45604537--45604611	37	2.0	37	94	0	132	36	4	14	45	1.64
45604610--45604652	9	4.8	9	85	0	59	25	9	27	37	1.87
45604856--45604919	23	2.8	23	88	2	103	46	4	23	25	1.71
45606711--45606752	15	2.6	17	81	11	52	28	0	4	66	1.12
45607699--45607760	28	2.2	28	86	8	90	58	0	4	37	1.20
45609378--45609425	24	2.1	23	81	14	55	14	2	16	66	1.34
45615232--45615273	18	2.4	18	80	4	50	64	9	4	21	1.42
45615280--45615366	19	4.6	19	71	16	72	62	3	2	32	1.25
45615256--45615366	19	5.8	18	72	10	69	59	4	3	32	1.35
45615254--45615348	29	3.3	29	71	20	74	60	4	4	31	1.35
45615256--45615366	18	5.7	19	73	11	91	59	4	3	32	1.35
45624234--45624291	25	2.3	25	77	16	66	32	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45624273--45624320	25	1.9	25	91	0	78	37	22	22	16	1.94
45639554--45639616	30	2.0	32	84	6	85	46	0	3	50	1.17
45644456--45644486	12	2.7	12	95	5	55	61	0	0	38	0.96
45644459--45644533	20	3.6	20	74	15	71	61	0	2	36	1.10
45644474--45644533	16	3.5	17	75	20	54	61	0	3	35	1.12
45644454--45644531	18	4.3	18	77	12	70	61	0	2	35	1.10
45644457--45644548	21	4.3	21	78	14	82	59	0	3	36	1.14
45645127--45645167	16	2.5	16	85	14	57	4	19	0	75	0.98
45648168--45648209	18	2.3	18	92	8	68	28	0	2	69	1.01
45661189--45661373	40	4.6	40	79	8	198	24	24	28	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297