Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  57  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20184764--20184814
22
2.3
22
82
0
57
17
21
19
41
1.91
20190663--20190697
17
2.0
18
94
5
63
11
22
42
22
1.85
20198231--20198272
18
2.3
18
100
0
84
33
4
19
42
1.72
20199411--20199821
47
8.7
47
97
0
750
32
8
30
29
1.86
20199940--20200018
37
2.1
37
90
0
122
24
18
31
25
1.98
20226821--20226870
23
2.2
23
82
13
59
42
18
14
26
1.87
20227345--20227390
24
1.9
24
90
0
74
10
26
13
50
1.74
20228540--20228565
10
2.6
10
100
0
52
42
23
0
34
1.54
20237795--20237979
79
2.3
81
85
7
245
24
22
27
25
2.00
20237796--20237979
40
4.6
40
82
9
207
24
22
27
25
2.00
20237848--20238012
79
2.1
79
83
6
201
26
21
26
26
1.99
20238360--20238449
47
1.9
47
93
0
153
20
25
27
26
1.99
20240313--20240419
56
1.9
56
100
0
214
20
8
20
50
1.74
20248049--20248230
79
2.3
81
83
7
221
25
28
21
24
1.99
20248049--20248230
40
4.6
40
83
6
219
25
28
21
24
1.99
20251227--20251324
49
2.0
49
100
0
196
14
14
30
40
1.85
20258605--20258651
21
2.2
21
84
0
58
14
34
27
23
1.94
20259031--20259255
112
2.0
112
99
0
441
25
17
20
36
1.95
20259493--20259539
22
2.1
22
96
0
85
23
25
23
27
2.00
20265513--20265537
11
2.3
11
100
0
50
8
0
8
84
0.79
20266291--20266476
50
3.7
50
90
1
230
28
22
27
21
1.99
20266736--20266785
20
2.5
20
81
12
66
58
6
24
12
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20271093--20271146
26
2.0
27
82
10
67
44
11
12
31
1.78
20286093--20286139
9
5.2
9
80
10
60
31
2
0
65
1.04
20286081--20286122
19
2.3
18
87
4
57
33
0
2
64
1.07
20286093--20286181
10
9.1
10
70
15
62
33
3
1
61
1.20
20286097--20286151
27
2.0
28
85
3
76
29
3
0
67
1.08
20289938--20289997
16
3.6
16
72
23
52
80
3
0
16
0.85
20289936--20289996
22
2.7
22
79
18
72
80
3
0
16
0.84
20289936--20289998
21
3.0
20
79
6
72
79
3
0
17
0.86
20297974--20298153
35
5.1
35
82
1
182
39
27
16
16
1.90
20301770--20301812
22
2.0
22
85
0
59
32
9
9
48
1.67
20311634--20311679
19
2.3
20
89
10
69
63
0
2
34
1.07
20314198--20314324
50
2.6
49
77
6
132
30
21
23
24
1.99
20317105--20317176
36
2.0
36
94
5
128
38
27
19
13
1.90
20318975--20319015
13
3.1
14
86
6
50
21
7
24
46
1.77
20321809--20321902
47
2.0
47
87
0
134
30
12
23
32
1.92
20322383--20322683
9
32.6
9
69
24
116
47
14
0
38
1.44
20322422--20322454
16
2.1
16
100
0
66
45
24
0
30
1.53
20322471--20322688
31
6.7
31
81
14
269
47
13
0
38
1.43
20322371--20322688
103
3.1
103
91
8
483
47
13
0
38
1.43
20322607--20322688
29
2.9
29
87
10
109
47
13
0
39
1.43
20328363--20328451
45
2.0
44
97
0
160
31
19
22
25
1.97
20328949--20328994
21
2.2
21
84
0
56
39
21
36
2
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20329061--20329105
21
2.1
21
84
8
56
40
11
40
8
1.72
20329410--20329704
43
7.0
42
86
2
371
23
20
25
31
1.98
20334924--20334965
10
3.7
12
81
18
54
69
2
16
11
1.29
20335008--20335086
12
6.6
12
69
5
52
63
2
22
11
1.40
20346593--20346654
26
2.3
26
83
2
70
48
22
11
17
1.79
20351005--20351110
48
2.3
46
85
3
140
44
26
12
16
1.83
20352664--20352767
53
2.0
53
94
0
181
27
19
18
34
1.95
20352854--20352920
20
3.3
19
69
8
53
19
29
14
35
1.92
20352871--20352934
21
3.1
21
67
13
60
26
28
12
32
1.93
20352860--20352960
41
2.5
40
86
3
130
23
27
13
34
1.93
20352961--20353063
41
2.5
40
84
4
118
21
29
15
33
1.94
20359787--20359950
41
4.1
40
84
3
168
36
17
24
21
1.94
20359787--20359950
81
2.0
81
82
2
195
36
17
24
21
1.94
20363456--20363500
14
2.9
16
87
9
58
42
8
0
48
1.34
20363453--20363500
16
3.0
16
82
11
55
41
8
0
50
1.33
20366237--20366583
50
6.8
50
88
2
417
22
29
21
27
1.99
20377110--20377201
48
1.9
48
84
4
123
25
32
22
19
1.97
20382412--20382605
50
3.8
50
79
9
180
22
27
21
28
1.99
20386822--20386854
3
11.0
3
100
0
66
66
0
0
33
0.92
20386940--20387001
24
2.4
26
89
7
92
43
11
0
45
1.40
20387139--20387193
18
2.9
18
74
15
58
61
1
36
0
1.06
20387158--20387286
10
12.6
10
69
17
52
70
0
28
0
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20387121--20387177
26
2.1
27
90
6
89
61
0
38
0
0.96
20387158--20387320
78
2.2
73
89
6
238
69
1
29
0
0.96
20387132--20387280
32
4.6
32
78
11
110
68
0
30
0
0.95
20387131--20387260
4
32.0
4
72
21
53
67
0
31
0
0.96
20387130--20387291
41
4.0
41
80
11
181
67
0
31
0
0.95
20388047--20388102
27
2.1
27
89
0
85
46
12
32
8
1.73
20391649--20391685
18
2.1
18
94
0
65
10
45
8
35
1.69
20392170--20392206
9
4.1
9
89
0
56
48
13
8
29
1.71
20393790--20393824
3
11.7
3
100
0
70
68
31
0
0
0.90
20394628--20394673
23
2.0
23
91
0
74
28
10
32
28
1.91
20394868--20394931
28
2.4
28
94
5
114
48
0
10
40
1.38
20395214--20395259
21
2.3
19
85
7
56
63
4
2
30
1.26
20395715--20395763
8
5.9
8
84
11
55
36
0
2
61
1.08
20395730--20395797
21
3.4
21
80
8
70
38
0
2
58
1.13
20409454--20409563
37
3.0
36
76
19
113
40
3
2
53
1.33
20409762--20409812
25
2.0
26
84
3
68
39
11
9
39
1.75
20413648--20413700
21
2.6
21
85
5
65
43
18
22
15
1.87
20415401--20415458
29
2.0
29
100
0
116
48
6
17
27
1.72
20415546--20415611
10
6.2
11
73
16
50
57
4
3
34
1.34
20415626--20415684
24
2.6
23
86
7
77
55
1
6
35
1.36
20416566--20416591
10
2.6
10
100
0
52
80
7
0
11
0.89
20417216--20417847
50
12.6
50
71
5
427
24
19
22
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20417189--20417865
100
6.8
100
84
2
851
24
19
22
33
1.97
20419156--20419185
13
2.3
13
94
0
51
10
20
0
70
1.16
20424535--20424593
24
2.6
23
86
7
77
55
1
6
35
1.36
20425681--20425739
24
2.6
22
81
7
66
54
1
8
35
1.41
20431693--20431752
30
2.0
31
86
3
86
40
0
40
20
1.52
20431962--20431998
9
4.1
9
92
0
65
29
10
13
45
1.77
20432389--20432424
18
2.1
18
89
5
56
33
25
0
41
1.55
20436694--20436743
9
5.2
9
77
13
55
44
2
0
54
1.11
20436724--20436771
24
2.0
24
84
8
62
43
0
0
56
0.99
20437076--20437105
11
2.7
11
94
0
51
46
0
0
53
1.00
20445987--20446019
17
2.0
16
94
5
57
60
0
0
39
0.97
20445984--20446026
22
2.0
22
90
0
68
62
0
0
37
0.95
20447959--20448054
33
2.9
33
84
3
122
12
18
21
46
1.82
20453071--20453183
36
3.2
36
69
14
108
22
17
25
34
1.96
20453057--20453217
70
2.3
71
86
4
229
21
18
24
35
1.95
20470343--20470414
36
2.0
36
86
0
99
31
5
19
43
1.74
20470481--20470590
34
3.1
35
73
10
116
21
20
25
32
1.97
20470474--20470752
70
4.0
70
77
5
271
22
21
23
32
1.98
20474096--20474156
26
2.2
28
81
18
76
62
8
0
29
1.24
20477923--20478109
40
4.6
40
88
4
250
25
20
28
25
1.99
20477923--20478109
82
2.3
80
87
1
266
25
20
28
25
1.99
20499183--20499301
40
3.0
40
81
4
150
26
29
14
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20504303--20504337
6
5.8
6
89
0
52
62
0
20
17
1.32
20504303--20504337
12
2.9
12
91
0
61
62
0
20
17
1.32
20504531--20504556
5
5.2
5
100
0
52
42
19
19
19
1.90
20505308--20505367
30
2.0
31
86
3
86
40
0
40
20
1.52
20505581--20505617
9
4.1
9
92
0
65
29
10
13
45
1.77
20508466--20508506
19
2.2
19
100
0
82
41
17
0
41
1.49
20518583--20518615
17
1.9
17
93
0
57
24
3
3
69
1.16
20531224--20531248
13
1.9
13
100
0
50
32
16
16
36
1.90
20540829--20540878
24
2.0
25
85
11
68
72
8
0
20
1.10
20548803--20548845
22
1.9
22
85
4
59
39
4
16
39
1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297