genome.fa.s25.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  119  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42405252--42405355	52	2.0	52	98	0	199	39	19	18	23	1.92
42405514--42405545	9	3.7	9	95	4	57	21	21	12	43	1.86
42410072--42410169	48	2.0	48	96	0	178	33	13	28	24	1.93
42413577--42413700	64	1.9	64	86	0	176	29	16	16	37	1.91
42413764--42414161	44	9.1	44	69	11	273	36	21	22	19	1.95
42413776--42414161	88	4.4	88	95	1	643	36	21	22	19	1.95
42414941--42414988	12	3.8	12	76	10	51	29	4	4	62	1.32
42415141--42415182	22	1.9	22	90	0	66	23	7	2	66	1.28
42416250--42416460	96	2.2	96	100	0	422	34	15	19	30	1.93
42417635--42417885	126	2.0	126	97	0	475	27	13	26	33	1.93
42418054--42418708	327	2.0	327	98	0	1274	29	11	25	32	1.92
42423195--42423345	74	2.0	74	98	0	293	40	12	11	35	1.80
42424183--42424441	130	2.0	130	98	0	500	38	20	10	30	1.86
42430587--42430618	9	3.7	9	95	4	57	21	21	12	43	1.86
42439339--42439446	26	4.2	26	92	0	180	37	24	6	32	1.81
42447358--42447471	57	2.0	57	100	0	228	28	26	21	24	1.99
42447669--42447815	73	2.0	73	98	0	285	43	17	17	21	1.88
42448906--42449068	82	2.0	82	97	0	308	32	13	26	27	1.94
42458134--42458190	26	2.2	26	81	6	62	66	1	3	28	1.18
42459570--42459598	14	2.1	14	100	0	58	55	0	0	44	0.99
42459637--42459677	16	2.3	19	80	20	52	56	0	12	31	1.36
42459639--42459676	18	2.2	18	86	13	53	55	0	13	31	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42459682--42459756	23	3.2	23	67	14	62	50	1	14	33	1.51
42461125--42461271	61	2.4	60	80	8	156	39	7	10	42	1.67
42466835--42466918	44	2.0	41	84	11	107	61	1	4	32	1.24
42466911--42467011	46	2.2	46	87	8	143	40	2	9	46	1.52
42467127--42467159	12	2.8	12	95	4	59	72	6	6	15	1.24
42467108--42467181	26	2.8	26	84	10	80	67	2	9	20	1.31
42467145--42467271	39	3.2	41	80	15	135	66	0	11	22	1.24
42467108--42467261	64	2.4	65	92	3	249	66	1	10	21	1.29
42467125--42467245	14	9.2	14	73	23	102	68	1	9	19	1.26
42467246--42467306	16	3.9	16	74	8	63	63	0	11	24	1.27
42467168--42467297	25	5.2	26	79	15	107	64	0	10	24	1.25
42469765--42469843	14	5.6	14	76	8	72	22	8	0	68	1.17
42469791--42469844	21	2.4	23	82	11	60	20	9	0	70	1.14
42469762--42469928	58	3.0	57	84	11	204	23	10	0	65	1.27
42469809--42469911	14	7.2	14	70	23	81	22	9	0	67	1.19
42469789--42469928	53	2.5	55	86	11	187	23	10	0	65	1.29
42470381--42470476	6	17.3	6	77	13	55	19	20	0	59	1.38
42470381--42470478	11	8.9	11	78	5	83	20	21	0	58	1.40
42470368--42470416	16	3.3	15	83	13	57	14	12	0	73	1.10
42470376--42470453	16	4.8	16	84	6	77	20	16	0	62	1.32
42470439--42470477	12	3.4	12	93	6	64	17	28	0	53	1.44
42470392--42470478	16	5.3	17	78	13	69	21	21	0	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42470469--42470520	22	2.3	23	84	12	65	26	9	0	63	1.25
42470469--42470576	21	5.0	22	69	12	71	27	8	0	63	1.23
42470463--42470642	47	3.9	46	74	12	154	26	11	1	61	1.37
42470634--42470843	76	2.7	74	82	7	251	28	13	2	55	1.51
42470669--42470796	28	5.0	25	72	18	102	25	14	0	59	1.41
42473854--42474100	102	2.4	103	82	7	313	28	21	17	32	1.96
42473818--42474030	52	4.2	51	69	17	156	28	23	17	30	1.97
42474945--42475041	51	1.9	51	85	8	135	26	17	18	37	1.93
42482654--42482811	27	5.6	27	73	15	115	32	3	2	61	1.27
42482687--42482810	12	10.5	12	68	19	82	31	4	1	62	1.23
42486364--42486489	38	3.3	38	92	2	189	20	23	26	29	1.99
42486482--42486765	43	6.6	43	99	0	559	9	25	34	29	1.88
42499437--42499475	19	2.0	20	85	14	55	23	28	12	35	1.91
42503780--42503836	6	8.8	6	74	14	51	12	8	3	75	1.16
42508341--42508479	23	6.0	23	86	0	197	48	4	24	23	1.69
42508341--42508476	46	3.0	46	94	0	227	47	4	24	23	1.69
42512893--42513032	23	6.1	23	86	0	199	48	4	24	22	1.68
42512893--42513029	46	3.0	46	94	0	229	48	4	24	23	1.69
42513863--42513895	16	2.0	17	88	5	50	36	0	6	57	1.23
42513906--42513962	6	8.8	6	74	14	51	12	8	3	75	1.16
42518232--42518270	20	1.9	21	84	5	53	53	5	23	17	1.63
42524898--42524935	17	2.2	17	86	9	51	2	2	15	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42526232--42526261	6	5.0	6	100	0	60	33	0	0	66	0.92
42530138--42530204	34	2.0	34	88	5	100	32	22	23	20	1.98
42530944--42531000	25	2.3	25	90	0	69	38	17	14	29	1.89
42536340--42536417	39	2.0	39	97	0	147	17	10	26	44	1.81
42540890--42541291	170	2.4	167	81	5	479	34	11	19	33	1.89
42541282--42542092	3	270.3	3	100	0	1622	66	0	0	33	0.92
42560649--42560775	45	2.9	45	82	8	138	23	28	22	25	1.99
42561169--42561248	38	2.1	38	88	0	115	36	25	17	21	1.95
42566227--42566331	54	1.9	54	88	0	156	28	14	36	20	1.92
42566279--42566385	42	2.5	42	80	3	108	27	10	41	21	1.85
42566500--42566606	42	2.5	42	91	5	164	30	9	34	25	1.87
42574322--42574416	1	95.0	1	68	0	55	10	5	0	84	0.77
42574321--42574417	6	16.2	6	97	0	149	12	5	0	82	0.82
42576952--42577025	27	2.7	27	89	4	96	28	24	13	33	1.93
42576963--42577040	27	2.9	27	90	3	104	26	24	10	38	1.87
42579664--42579743	39	2.1	39	97	0	151	35	25	11	28	1.90
42580651--42580686	17	2.1	17	100	0	72	33	25	11	30	1.90
42602501--42602535	18	1.9	18	88	0	52	34	0	2	62	1.10
42604047--42604087	21	2.0	21	90	0	64	34	0	4	60	1.18
42606157--42606194	8	5.0	8	81	12	53	39	0	2	57	1.12
42606230--42606280	17	3.0	17	77	8	59	50	1	5	41	1.37
42614918--42615011	40	2.4	38	81	11	118	38	38	10	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42614936--42615013	40	2.0	40	92	5	131	39	34	11	14	1.82
42623150--42623189	21	1.9	21	94	0	71	20	15	27	37	1.92
42631059--42631116	9	6.4	9	85	0	80	43	22	8	25	1.82
42631059--42631108	18	2.8	18	93	0	91	42	22	10	26	1.84
42633614--42633649	12	3.0	12	95	0	63	27	25	5	41	1.77
42641947--42642760	72	11.1	72	88	3	1142	30	16	21	31	1.95
42641940--42642749	369	2.2	365	95	1	1431	30	16	21	31	1.95
42644089--42644139	23	2.2	23	96	0	93	39	5	3	50	1.45
42645857--42646024	62	2.8	61	70	12	148	48	3	1	46	1.27
42647846--42647910	33	2.0	33	96	0	121	20	24	35	20	1.96
42650929--42650970	19	2.2	20	86	4	59	57	7	4	30	1.47
42651204--42651265	25	2.5	25	89	2	99	56	4	4	33	1.42
42652809--42652971	82	2.0	80	90	5	238	39	10	15	34	1.81
42653400--42653442	20	2.2	20	100	0	86	53	0	9	37	1.33
42664511--42664578	21	3.3	20	74	8	57	29	11	4	54	1.56
42665012--42665069	21	2.7	22	78	5	64	20	6	6	65	1.40
42665146--42665179	18	1.9	18	88	5	52	32	5	0	61	1.20
42665362--42665397	3	12.0	3	87	0	54	30	2	0	66	1.06
42669393--42669492	49	2.0	49	98	0	191	35	22	10	33	1.87
42670607--42670631	12	2.1	12	100	0	50	64	0	0	36	0.94
42672776--42672833	30	1.9	30	89	6	91	43	27	8	20	1.81
42672737--42672894	87	1.8	84	89	4	244	38	21	11	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42673167--42673356	72	2.6	72	83	4	247	36	25	13	25	1.92
42673287--42673812	116	4.5	116	99	0	1016	38	23	13	24	1.91
42682105--42682140	12	3.0	12	83	0	54	44	2	22	30	1.67
42685277--42685345	19	3.6	19	70	14	61	56	2	7	33	1.42
42685963--42686008	18	2.6	18	75	0	56	6	0	32	60	1.22
42693276--42693316	11	3.7	11	80	0	55	19	14	9	56	1.66
42693345--42693375	12	2.7	11	90	9	53	29	0	0	70	0.87
42693357--42693414	30	1.9	30	85	0	80	29	8	8	53	1.61
42695490--42695523	3	11.3	3	100	0	68	67	0	0	32	0.91
42697965--42697989	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297