genome.fa.s25.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  137  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47023452--47023625	39	4.4	39	89	5	248	26	23	27	22	1.99
47023601--47023649	24	2.0	24	96	0	89	30	26	20	22	1.98
47023562--47023688	63	2.0	63	98	0	245	27	24	25	22	2.00
47023625--47023893	39	6.8	39	93	2	434	25	22	27	24	2.00
47023523--47023727	102	2.0	102	99	0	401	26	23	26	22	2.00
47023454--47023805	180	2.0	181	93	5	606	26	23	27	22	2.00
47034516--47034560	17	2.6	17	92	0	72	8	37	40	13	1.76
47041702--47041733	12	2.6	13	90	9	50	50	25	6	18	1.70
47048841--47048872	12	2.6	13	90	9	50	50	25	6	18	1.70
47062423--47062460	20	1.9	20	88	0	58	36	2	10	50	1.51
47063731--47063842	59	1.9	59	98	0	215	24	25	24	25	2.00
47074000--47074214	46	4.6	45	72	10	146	28	20	27	23	1.99
47074000--47074261	47	5.6	46	74	10	194	28	19	27	24	1.98
47076019--47076367	170	2.0	171	83	2	434	31	14	22	32	1.93
47077795--47077979	79	2.3	81	83	7	227	24	22	27	25	2.00
47077795--47077979	40	4.7	40	85	6	216	24	22	27	25	2.00
47077848--47078012	79	2.1	79	83	6	201	26	20	27	26	1.99
47096418--47096468	16	3.2	16	80	5	59	47	13	23	15	1.82
47096684--47096803	29	4.2	29	84	1	152	25	14	30	30	1.94
47100937--47100971	16	2.2	16	89	0	52	48	17	22	11	1.79
47101180--47101303	29	4.3	29	83	3	162	25	13	30	30	1.94
47103078--47103167	45	2.0	45	93	0	153	61	2	22	14	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47104737--47104920	40	4.7	40	81	11	195	25	27	21	25	2.00
47104737--47104920	79	2.3	81	81	11	213	25	27	21	25	2.00
47107180--47107281	37	2.8	37	92	1	161	24	31	19	24	1.98
47107461--47108400	89	10.6	89	99	0	1817	34	24	5	35	1.79
47108351--47108448	48	2.0	48	96	0	178	32	29	4	33	1.76
47111403--47111487	44	1.9	44	83	4	109	20	20	23	36	1.95
47111414--47111560	42	3.4	43	77	12	126	23	17	25	34	1.96
47120139--47120167	4	7.2	4	100	0	58	75	0	24	0	0.80
47127399--47127433	18	1.9	18	100	0	70	22	2	5	68	1.24
47129635--47129670	17	2.1	17	100	0	72	30	5	22	41	1.76
47129880--47129975	48	2.0	48	97	0	183	27	5	29	38	1.78
47130920--47130966	25	2.0	24	84	15	64	31	29	14	23	1.95
47131471--47131534	31	2.1	31	96	0	119	31	23	18	26	1.98
47133477--47133515	18	2.2	18	86	13	55	56	30	5	7	1.49
47147437--47147508	27	2.7	26	82	8	90	36	11	23	29	1.89
47160168--47160253	45	1.9	45	82	0	109	43	11	20	24	1.85
47160390--47160480	27	3.4	27	69	6	85	35	16	27	20	1.94
47163223--47163295	26	2.8	25	81	6	92	31	12	12	43	1.79
47170438--47170549	31	3.6	31	82	2	136	44	5	17	32	1.72
47170433--47170549	62	1.9	62	83	3	155	43	5	18	31	1.74
47171146--47171354	105	2.0	105	94	0	364	30	17	15	36	1.91
47172756--47172782	13	2.1	13	100	0	54	14	37	33	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47181832--47181873	21	2.1	20	82	8	50	40	21	7	30	1.80
47183753--47183789	18	2.1	18	100	0	74	43	16	10	29	1.82
47199382--47199532	76	2.0	76	96	0	275	29	12	21	37	1.90
47202565--47202749	48	3.9	47	69	16	148	28	19	23	28	1.98
47227995--47228676	341	2.0	340	99	0	1346	40	20	12	26	1.87
47251542--47251603	22	2.6	24	77	7	65	27	4	22	45	1.73
47257217--47257281	32	2.1	31	91	2	103	38	15	0	46	1.46
47265607--47265668	18	3.6	18	79	12	67	48	3	0	48	1.17
47265619--47265675	18	3.2	18	78	14	64	43	1	0	54	1.10
47265595--47265684	35	2.4	37	78	16	96	45	2	0	52	1.13
47265673--47265708	16	2.2	17	90	5	56	47	0	0	52	1.00
47265674--47265732	20	3.2	18	80	17	59	44	1	0	54	1.10
47266754--47266799	19	2.3	21	92	7	78	58	0	2	39	1.10
47272084--47272158	33	2.2	35	92	4	127	48	0	6	45	1.29
47272632--47272692	29	2.1	29	82	8	72	45	0	11	42	1.40
47272656--47272787	34	3.9	33	79	11	133	41	0	13	44	1.44
47272875--47273115	124	1.9	123	81	5	288	36	16	15	31	1.90
47276157--47276213	25	2.3	23	81	18	71	50	3	1	43	1.29
47276656--47276698	17	2.4	18	92	3	70	41	11	27	18	1.85
47282885--47282944	10	6.0	10	84	11	70	66	1	8	23	1.28
47284737--47284796	10	6.0	10	84	11	70	66	1	8	23	1.28
47287040--47287450	47	8.7	47	97	0	750	32	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47287569--47287647	37	2.1	37	90	0	122	24	18	31	25	1.98
47288456--47288492	19	1.9	19	89	10	58	0	16	0	83	0.64
47288515--47288696	96	1.9	97	87	1	267	32	26	13	26	1.93
47289494--47289541	15	3.1	15	83	13	62	77	0	2	20	0.88
47293196--47293249	10	5.7	9	82	12	56	70	1	5	22	1.18
47296879--47296957	39	2.0	39	100	0	158	34	17	17	30	1.94
47299194--47299243	25	2.0	25	96	0	91	50	24	8	18	1.73
47304648--47304729	41	2.0	41	85	0	110	37	30	18	13	1.89
47304669--47304816	38	3.8	38	75	6	129	36	30	18	14	1.91
47316240--47316334	40	2.4	40	77	10	115	35	35	12	15	1.86
47320807--47320910	38	2.8	38	83	4	122	33	27	21	17	1.95
47320821--47320923	38	2.7	38	81	0	116	33	28	21	16	1.95
47322277--47322328	3	17.3	3	87	0	77	1	0	32	65	1.04
47325083--47325133	25	2.0	25	96	0	93	25	11	13	49	1.76
47325040--47325176	68	2.0	68	97	0	256	21	12	16	49	1.78
47325108--47325196	43	2.1	43	95	0	160	21	12	16	49	1.78
47326457--47326783	27	12.1	27	77	4	284	34	21	18	24	1.96
47326457--47326783	54	6.1	54	83	3	347	34	21	18	24	1.96
47326457--47326783	81	4.0	81	79	2	345	34	21	18	24	1.96
47326920--47326999	27	3.0	25	80	8	79	22	21	22	33	1.97
47326920--47326989	27	2.6	27	82	8	81	22	21	22	32	1.98
47327187--47327252	33	2.0	33	84	0	87	28	22	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47330449--47330489	21	2.0	21	85	9	57	24	0	4	70	1.06
47347952--47347996	14	3.4	14	81	12	58	31	11	22	35	1.89
47352575--47352618	14	3.3	13	84	12	54	31	11	22	34	1.90
47355189--47355225	12	3.2	12	92	3	58	35	0	16	48	1.46
47355189--47355225	18	2.1	17	90	5	56	35	0	16	48	1.46
47356105--47356158	16	3.5	15	78	9	56	68	1	1	27	1.10
47356105--47356153	21	2.3	20	76	10	53	69	2	2	26	1.10
47360046--47360092	21	2.2	21	80	0	58	17	10	19	53	1.72
47360194--47360238	20	2.2	20	84	7	56	42	11	20	26	1.85
47364750--47364796	21	2.2	21	80	0	58	17	10	19	53	1.72
47364898--47364942	20	2.2	20	84	7	56	42	11	20	26	1.85
47370076--47370180	43	2.5	42	76	1	111	34	15	20	29	1.94
47380751--47380780	16	1.9	16	93	6	53	50	20	0	30	1.49
47391476--47391580	39	2.6	39	86	5	122	24	22	27	24	2.00
47391436--47391580	40	3.7	40	81	12	165	24	23	27	24	2.00
47391437--47391599	40	4.1	39	79	10	100	25	23	28	23	2.00
47391436--47391586	79	1.9	80	82	6	191	25	23	27	23	2.00
47398613--47398739	54	2.3	55	85	9	179	24	28	30	16	1.96
47400498--47400823	163	2.0	163	92	0	535	24	29	17	28	1.97
47400882--47401104	119	1.9	119	86	3	324	28	10	7	53	1.62
47418129--47418165	18	2.1	18	100	0	74	37	10	32	18	1.86
47420040--47420076	16	2.4	16	86	4	58	29	5	21	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47424003--47424063	30	2.0	30	87	0	86	31	24	6	37	1.81
47431139--47431224	45	1.9	45	83	4	111	23	20	22	33	1.97
47431139--47431230	22	4.1	22	72	13	80	22	20	21	34	1.96
47445372--47445433	31	2.0	32	87	3	90	24	24	17	33	1.96
47450057--47450106	25	2.0	25	96	0	91	38	4	18	40	1.69
47450280--47450330	26	2.0	26	88	0	75	45	15	17	21	1.86
47454509--47454608	44	2.3	43	82	5	121	33	24	15	28	1.95
47461215--47461274	29	2.1	29	84	6	77	50	11	6	31	1.65
47462573--47462601	14	2.0	15	93	6	51	20	20	27	31	1.98
47463614--47463696	41	2.0	41	90	0	130	40	12	14	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297