genome.fa.s25.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  276  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94051094--94051284	41	4.6	41	89	0	265	25	18	27	28	1.98
94051814--94051847	7	4.9	7	92	0	59	14	0	26	58	1.36
94051970--94052008	14	2.8	14	92	0	60	12	0	30	56	1.37
94052176--94052227	20	2.6	20	68	0	50	23	0	30	46	1.53
94052176--94052227	13	3.9	13	73	12	52	23	0	30	46	1.53
94054594--94054645	24	2.2	24	89	0	77	55	9	1	32	1.43
94056564--94056616	24	2.2	24	89	0	79	56	9	1	32	1.42
94056944--94057003	10	6.0	10	76	5	59	41	1	0	56	1.09
94056942--94056993	21	2.6	21	79	14	65	40	1	0	57	1.10
94056944--94057038	21	4.8	18	72	13	64	37	2	1	58	1.17
94056933--94057000	21	3.3	21	75	17	63	42	1	1	54	1.18
94056954--94057038	20	4.3	19	72	12	64	37	2	1	58	1.18
94057705--94057741	19	1.9	19	94	0	65	51	0	0	48	1.00
94058543--94058589	24	2.0	24	87	8	69	31	4	6	57	1.43
94060049--94060154	28	3.7	27	73	19	81	26	28	18	26	1.98
94060042--94060162	60	2.0	61	87	6	174	28	26	18	26	1.98
94060042--94060190	60	2.5	60	83	7	160	28	25	18	27	1.98
94076692--94076760	34	2.1	33	88	2	102	27	20	24	27	1.99
94080756--94080815	30	2.0	31	86	3	86	30	10	18	41	1.83
94089300--94089418	47	2.5	46	81	9	125	27	15	31	25	1.96
94090627--94090667	22	1.9	22	90	5	66	12	43	26	17	1.84
94092179--94092219	21	1.9	22	90	5	66	39	9	12	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94098627--94098651	9	2.8	9	100	0	50	44	12	32	12	1.78
94101101--94101192	37	2.5	37	83	3	114	21	19	18	40	1.92
94101231--94101278	11	4.4	11	76	10	53	2	27	12	58	1.46
94102676--94102758	41	2.0	41	95	0	148	27	15	20	36	1.93
94103781--94103866	26	3.2	26	88	6	136	39	12	2	45	1.55
94106630--94106671	16	2.7	16	81	3	50	21	0	2	76	0.90
94109336--94109648	156	2.0	156	98	0	599	29	12	29	28	1.93
94123005--94123055	26	2.0	26	96	0	93	35	11	25	27	1.91
94123149--94123219	28	2.5	28	83	0	70	25	19	19	35	1.96
94123461--94123511	25	2.1	25	82	10	61	41	1	11	45	1.52
94124314--94124345	16	2.0	16	93	0	55	46	12	9	31	1.73
94130723--94130748	12	2.2	12	100	0	52	0	7	0	92	0.39
94130819--94130844	2	13.0	2	100	0	52	50	0	0	50	1.00
94135714--94135753	19	2.0	20	85	4	55	35	0	5	60	1.19
94135707--94135787	22	3.5	22	73	18	65	38	0	2	59	1.11
94136420--94136452	6	5.7	6	89	3	50	72	12	0	15	1.12
94145545--94145600	28	2.0	28	96	0	103	53	5	23	17	1.64
94154850--94154917	31	2.2	31	89	2	102	48	16	4	30	1.65
94155807--94155864	27	2.1	27	100	0	116	20	31	39	8	1.83
94155956--94155997	22	1.9	22	85	9	59	69	0	26	4	1.08
94155999--94156154	78	2.0	77	98	1	303	35	0	13	50	1.42
94162459--94162892	145	3.0	145	88	6	684	28	5	6	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94162749--94162789	15	2.8	15	82	14	50	29	2	2	65	1.18
94162459--94162892	142	3.0	144	88	7	675	28	5	6	58	1.47
94162826--94162957	65	2.0	65	91	1	212	29	6	9	55	1.55
94162951--94162984	13	2.7	13	90	4	52	14	0	5	79	0.91
94162688--94163091	207	1.9	208	86	5	577	28	5	8	57	1.51
94163112--94163140	14	2.1	14	100	0	58	44	0	0	55	0.99
94163779--94163821	22	2.0	22	86	9	61	16	20	46	16	1.84
94163773--94163822	22	2.5	20	78	15	57	18	22	44	16	1.87
94165389--94165740	177	2.0	177	89	0	533	35	17	18	28	1.93
94174170--94174272	52	1.9	54	81	11	124	29	6	3	60	1.40
94183729--94183773	22	2.0	24	91	8	76	0	13	17	68	1.20
94185112--94185183	5	14.8	5	74	21	64	38	0	4	56	1.18
94185141--94185183	19	2.3	19	92	8	70	41	0	0	58	0.98
94185188--94185227	18	2.2	19	90	4	64	80	2	15	2	0.93
94186098--94186231	44	3.0	45	83	4	162	35	13	23	27	1.93
94191569--94191663	44	2.2	44	84	3	120	31	18	18	30	1.96
94193111--94193150	15	2.7	15	88	7	55	35	0	2	62	1.09
94194951--94194982	11	2.9	11	95	0	55	43	21	0	34	1.53
94195147--94195248	48	2.1	47	82	8	118	31	9	8	50	1.66
94196842--94196879	18	2.1	18	95	0	67	23	21	10	44	1.83
94199955--94200138	43	4.3	43	83	2	199	29	26	17	26	1.98
94204838--94204877	13	3.1	13	82	10	55	20	0	2	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94204840--94204884	19	2.3	19	88	3	72	17	0	4	77	0.92
94204840--94204884	6	7.0	6	85	10	54	17	0	4	77	0.92
94204840--94204884	13	3.5	12	82	11	54	17	0	4	77	0.92
94205268--94205321	22	2.5	22	82	11	67	50	20	1	27	1.59
94205454--94205508	22	2.6	22	77	5	60	38	32	1	27	1.67
94205538--94205573	15	2.5	15	90	4	56	44	27	0	27	1.55
94205788--94205835	23	2.1	22	85	11	62	27	0	22	50	1.50
94205877--94206012	41	3.3	40	90	4	193	20	22	22	34	1.97
94205877--94206042	41	4.1	41	86	5	160	21	22	21	34	1.96
94208729--94209111	126	3.0	126	92	0	624	27	19	18	34	1.95
94211258--94211282	10	2.5	10	100	0	50	64	8	20	8	1.46
94220404--94220574	48	3.5	48	87	3	218	25	17	30	26	1.97
94224096--94224254	51	3.1	51	84	0	201	17	23	16	41	1.90
94226430--94226550	46	2.7	46	81	8	124	21	30	21	26	1.98
94232149--94232174	13	2.0	13	100	0	52	30	0	0	69	0.89
94232385--94232429	3	15.0	3	100	0	90	66	0	0	33	0.92
94232796--94232837	11	3.6	11	81	12	57	38	0	2	59	1.10
94232928--94233033	53	2.0	53	96	0	194	28	22	7	41	1.81
94240528--94240559	15	2.1	15	94	0	55	40	3	6	50	1.43
94243106--94243130	5	5.0	5	100	0	50	20	0	0	80	0.72
94247738--94247912	46	3.8	46	85	1	215	20	25	14	39	1.91
94247738--94247912	93	1.9	93	85	2	244	20	25	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94250063--94250114	11	4.7	11	76	9	52	63	3	0	32	1.12
94252469--94252558	33	2.7	33	86	6	112	48	6	30	14	1.69
94262149--94262183	18	2.0	18	88	5	54	20	28	40	11	1.87
94270131--94270168	10	3.8	10	83	13	51	21	18	31	28	1.97
94270132--94270169	20	1.9	20	94	0	67	18	18	34	28	1.95
94271616--94271642	12	2.2	12	100	0	54	77	7	0	14	0.97
94271623--94271669	19	2.3	20	85	10	60	85	2	6	6	0.82
94271635--94271675	10	4.1	10	84	12	57	85	0	12	2	0.70
94271635--94271675	20	2.1	19	90	4	64	85	0	12	2	0.70
94272719--94272765	15	3.1	15	84	9	60	70	0	17	12	1.17
94272793--94272853	12	5.3	12	71	11	56	59	1	24	14	1.45
94272795--94272844	21	2.3	22	89	6	84	60	0	26	14	1.34
94277963--94278015	27	1.9	28	85	11	74	35	11	15	37	1.83
94282783--94282850	28	2.4	27	83	9	84	63	2	10	23	1.40
94283130--94283172	21	2.0	21	95	0	77	27	0	37	34	1.57
94283153--94283185	16	2.1	16	94	0	57	33	0	36	30	1.58
94283164--94283258	45	2.1	44	88	1	136	34	5	27	32	1.79
94288102--94288185	35	2.4	36	84	7	120	41	2	14	41	1.58
94288071--94288201	35	3.9	34	75	8	101	41	1	12	44	1.51
94288283--94288928	126	5.1	126	86	3	847	38	16	16	28	1.90
94300238--94300262	2	12.5	2	100	0	50	0	52	0	48	1.00
94308994--94309059	27	2.4	28	94	5	125	54	7	15	22	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94309049--94309551	126	4.0	126	87	0	731	37	14	17	30	1.89
94309049--94309551	252	2.0	251	91	1	810	37	14	17	30	1.89
94311956--94312087	39	3.4	39	92	4	205	28	19	26	25	1.99
94311956--94312137	78	2.3	78	82	9	203	27	20	25	25	1.99
94312376--94312544	39	4.3	39	90	1	248	20	23	27	27	1.99
94314378--94314562	40	4.7	40	84	6	225	25	27	22	23	2.00
94314378--94314562	79	2.3	82	83	7	229	25	27	22	23	2.00
94326393--94326526	47	2.8	49	83	5	191	21	29	20	28	1.98
94328923--94329024	50	2.1	49	92	5	170	25	22	20	31	1.98
94329714--94329758	23	2.0	23	86	0	63	44	13	0	42	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297