genome.fa.s25.2.7.7.80.10.50.1000.274.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  274  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93464958--93465331	182	2.1	182	97	0	703	31	21	16	30	1.95
93468563--93468623	30	2.1	29	96	3	113	36	22	16	24	1.94
93470811--93471065	55	4.8	53	77	9	229	35	16	25	21	1.95
93470818--93471018	108	1.8	110	90	4	327	33	17	25	22	1.96
93471257--93471287	16	1.9	16	93	0	53	41	0	22	35	1.54
93473111--93473246	62	2.2	61	81	3	166	19	25	27	27	1.99
93473661--93473720	6	9.8	6	75	21	54	76	1	20	1	0.96
93473661--93473705	13	3.6	13	77	20	51	77	0	20	2	0.87
93473641--93473714	24	3.1	24	80	7	80	75	2	18	2	1.04
93473678--93473720	17	2.4	17	84	11	50	79	2	18	0	0.85
93475269--93475375	43	2.5	43	85	0	160	28	18	27	26	1.98
93475619--93475722	46	2.3	46	93	1	174	30	5	20	43	1.75
93479205--93479238	8	4.1	8	85	7	50	35	0	2	61	1.11
93479205--93479253	17	2.9	18	80	17	52	38	0	4	57	1.18
93480645--93480721	38	2.0	38	97	0	145	33	10	22	33	1.88
93483958--93484081	56	2.2	57	82	7	155	33	20	16	28	1.95
93491082--93491146	27	2.6	25	86	11	96	10	36	0	49	1.38
93505550--93506359	26	31.2	26	100	0	1620	30	7	26	34	1.85
93507137--93507278	43	3.3	43	90	2	214	28	29	16	24	1.97
93511599--93511703	49	2.1	50	92	3	185	31	6	24	37	1.81
93511808--93512050	40	6.4	40	83	11	330	25	19	27	27	1.99
93511935--93511989	28	2.0	28	100	0	110	21	21	32	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93511895--93512026	68	1.9	68	96	0	246	25	20	28	26	1.99
93511855--93512050	108	1.8	108	94	0	347	25	19	28	27	1.99
93511963--93512070	40	2.7	40	88	4	139	25	21	25	26	1.99
93512078--93512209	57	2.3	57	83	3	160	21	18	30	29	1.97
93513869--93514059	96	2.0	95	96	1	355	30	11	23	34	1.90
93517582--93517612	15	2.0	16	93	6	55	38	6	3	51	1.44
93520529--93520553	7	3.6	7	100	0	50	60	0	0	40	0.97
93520552--93520600	14	3.4	14	85	2	62	22	0	2	75	0.90
93520561--93520601	7	5.9	7	88	0	55	19	0	0	80	0.71
93521818--93522038	41	5.4	42	83	5	249	23	23	20	33	1.97
93521818--93522004	83	2.3	82	87	1	259	24	22	20	32	1.98
93522957--93523032	26	2.8	26	86	4	89	34	19	13	32	1.90
93523155--93523213	27	2.2	26	81	3	64	20	22	18	38	1.93
93523166--93523222	27	2.1	27	87	6	80	17	19	22	40	1.91
93529473--93529528	26	2.2	26	100	0	112	30	7	26	35	1.83
93530972--93531047	26	2.8	26	88	4	98	34	21	13	31	1.91
93531151--93531265	27	4.2	28	81	12	150	19	23	22	34	1.96
93531151--93531283	27	4.9	26	81	12	135	20	24	21	34	1.96
93531164--93531283	55	2.2	55	97	2	226	21	24	19	35	1.96
93535715--93535825	56	2.0	54	82	3	132	33	11	19	35	1.88
93542849--93543019	86	2.0	86	96	0	315	38	22	5	32	1.78
93547087--93547197	27	4.1	27	84	8	138	37	23	24	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93548616--93548662	24	2.0	24	91	0	76	23	38	2	36	1.67
93560461--93560905	40	11.1	40	94	1	682	24	22	26	26	2.00
93568750--93568967	40	5.5	40	92	3	302	23	23	28	24	2.00
93571338--93571405	32	2.1	32	97	0	127	33	29	4	32	1.77
93571484--93571583	28	3.5	28	73	1	92	29	27	16	28	1.97
93571467--93571610	57	2.5	55	81	5	162	27	30	16	25	1.97
93576320--93576465	72	2.0	72	97	0	274	42	9	20	27	1.83
93577227--93577410	49	3.7	49	76	5	208	28	17	25	28	1.98
93577222--93577405	100	1.8	100	89	0	287	26	17	26	29	1.98
93580393--93580447	15	3.7	15	75	20	62	12	14	10	61	1.56
93583133--93583320	49	3.8	49	80	2	232	28	18	25	28	1.98
93583132--93583315	100	1.8	100	91	0	305	27	18	25	28	1.98
93589564--93589674	54	2.0	55	87	1	161	25	21	15	37	1.92
93589867--93589950	44	1.9	44	83	9	109	26	22	11	39	1.89
93605611--93605787	40	4.4	40	79	9	166	25	20	25	28	1.99
93613918--93613947	15	2.0	15	100	0	60	53	6	13	26	1.64
93616226--93616359	40	3.4	41	69	13	118	29	16	23	30	1.96
93621291--93621354	32	2.0	32	96	0	119	39	21	21	17	1.93
93621557--93621598	17	2.5	17	88	0	66	26	4	7	61	1.42
93625206--93625236	7	4.4	7	95	0	53	67	0	0	32	0.91
93627099--93627177	37	2.1	37	83	4	97	26	27	18	26	1.98
93627297--93627411	47	2.4	47	86	0	158	27	31	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93627382--93627444	33	1.9	33	93	0	108	30	25	9	34	1.88
93627415--93627621	47	4.3	47	88	3	324	29	29	9	31	1.88
93627412--93627618	97	2.2	94	94	2	360	28	29	9	32	1.89
93633550--93633884	47	7.1	47	91	2	510	32	9	30	27	1.89
93634003--93634338	37	9.1	37	98	0	645	24	18	34	22	1.96
93634290--93634392	54	1.9	54	91	0	170	21	21	31	26	1.98
93641120--93641292	90	1.9	90	79	2	195	26	22	20	30	1.99
93648726--93648759	17	1.9	18	88	5	52	38	5	5	50	1.51
93656920--93657207	50	5.8	50	86	2	334	22	27	19	30	1.98
93661312--93661375	31	2.0	32	85	8	87	45	0	7	46	1.32
93661994--93662041	15	3.3	15	82	2	62	37	2	12	47	1.53
93669923--93669954	13	2.5	13	100	0	64	6	9	50	34	1.60
93672850--93672900	6	8.3	6	77	12	50	72	0	0	27	0.85
93672861--93672900	20	2.0	20	95	0	71	72	0	0	27	0.85
93675047--93675078	16	2.0	16	100	0	64	50	31	6	12	1.65
93676475--93676621	29	5.2	29	86	4	158	27	14	31	26	1.95
93680973--93681119	29	5.2	29	82	5	142	29	13	31	25	1.94
93697057--93697081	6	4.2	6	100	0	50	32	0	68	0	0.90
93699496--93699606	42	2.6	42	80	5	127	28	16	23	31	1.96
93713535--93713598	31	2.1	31	87	0	92	25	21	15	37	1.93
93713810--93713932	24	5.2	24	93	3	214	28	21	21	29	1.98
93713812--93713931	23	5.1	23	93	3	204	29	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93713812--93713933	47	2.6	47	97	0	226	28	20	22	28	1.98
93713978--93714047	20	3.5	20	92	1	115	32	20	11	35	1.88
93714084--93714131	25	2.0	24	83	4	60	25	18	25	31	1.98
93723674--93723776	52	2.0	50	96	3	188	28	9	36	25	1.87
93724941--93725158	40	5.5	40	89	2	289	23	23	27	25	2.00
93733846--93733906	30	2.0	30	87	0	86	29	24	8	37	1.84
93735603--93735672	28	2.5	28	88	4	97	34	25	14	25	1.94
93748719--93748778	27	2.3	26	82	2	66	35	18	23	23	1.96
93755870--93755927	25	2.3	24	80	8	71	37	1	1	58	1.18
93757666--93757741	37	2.1	37	100	0	152	42	5	11	40	1.64
93758795--93758834	18	2.2	18	90	0	62	52	2	0	45	1.14
93759818--93759942	39	3.2	39	91	0	187	28	29	19	22	1.98
93765790--93765853	31	2.1	31	90	0	101	25	23	15	35	1.94
93766067--93766233	24	7.1	24	90	2	250	28	20	21	28	1.98
93766067--93766234	47	3.6	47	88	3	257	28	20	21	29	1.98
93766067--93766232	23	7.1	23	90	2	242	28	21	21	28	1.98
93766283--93766349	20	3.3	20	91	0	107	34	19	11	34	1.88
93766386--93766433	25	1.9	25	87	8	71	22	16	25	35	1.95
93773361--93773424	31	2.1	31	90	0	101	25	23	15	35	1.94
93773639--93773805	23	7.1	23	89	2	244	28	20	22	28	1.98
93773639--93773806	47	3.6	46	87	4	255	28	20	22	29	1.98
93773854--93773929	20	3.9	20	87	3	102	35	21	10	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93773854--93773910	11	5.5	11	68	16	50	33	19	12	35	1.89
93773958--93774005	25	1.9	25	86	0	69	25	16	25	33	1.96
93774262--93774302	17	2.4	17	100	0	82	19	31	31	17	1.95
93777020--93777135	39	3.0	39	92	0	178	28	28	19	23	1.98
93781097--93781187	44	2.1	44	100	0	182	40	8	12	38	1.73
93800231--93800255	12	2.1	12	100	0	50	40	24	8	28	1.83
93805974--93806033	30	2.0	30	83	0	75	33	23	5	38	1.76
93806848--93806893	20	2.3	20	96	0	83	10	23	43	21	1.84
93808509--93808618	50	2.2	48	80	9	123	30	19	18	31	1.95
93808525--93808630	50	2.1	50	87	0	149	32	19	17	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297