genome.fa.s25.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  188  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63613212--63613253	17	2.5	17	92	0	66	16	45	26	11	1.82
63623413--63623466	27	2.0	27	88	0	81	37	31	18	12	1.89
63629494--63629526	16	2.1	16	94	0	57	57	3	6	33	1.38
63630568--63630622	27	2.0	27	100	0	110	49	10	18	21	1.78
63631459--63631506	11	4.4	11	79	10	53	81	2	8	8	0.96
63631457--63631512	28	2.0	27	86	10	78	80	1	8	8	0.98
63642473--63642547	27	2.9	27	86	7	75	18	8	17	56	1.65
63642491--63642546	27	2.1	27	100	0	112	17	3	17	60	1.50
63652380--63652541	26	6.2	26	97	0	297	35	25	6	32	1.81
63655279--63655320	22	1.9	22	90	0	66	45	9	7	38	1.64
63657837--63657896	15	3.9	15	78	4	66	73	3	0	23	0.98
63658243--63658282	10	3.8	10	83	9	53	60	0	2	37	1.11
63658214--63658280	25	2.8	25	82	11	86	56	0	5	37	1.24
63663582--63663845	26	10.2	26	97	0	494	34	7	23	34	1.83
63667973--63668092	60	2.0	60	98	0	231	35	19	15	30	1.92
63670811--63670855	19	2.3	20	78	17	51	33	2	2	62	1.20
63671426--63671464	20	2.0	20	84	0	51	43	7	20	28	1.79
63675359--63675470	43	2.6	43	80	4	129	21	15	29	33	1.94
63682151--63682179	14	2.1	14	100	0	58	13	13	0	72	1.13
63690516--63690570	27	2.0	28	82	3	67	32	9	0	58	1.30
63690637--63690684	22	2.1	22	84	7	60	31	4	0	64	1.12
63690647--63690681	12	2.9	12	91	0	61	25	2	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63692497--63692551	27	2.0	28	82	3	67	32	9	0	58	1.30
63692618--63692665	22	2.1	22	84	7	60	31	4	0	64	1.12
63692628--63692662	12	2.9	12	91	0	61	25	2	0	71	1.00
63692976--63693018	22	2.0	22	90	0	68	20	2	2	74	1.04
63697961--63698024	31	2.1	31	96	0	119	54	3	23	18	1.58
63702145--63702329	40	4.7	40	81	6	198	24	28	22	24	2.00
63710226--63710409	40	4.6	40	79	10	198	25	28	22	23	1.99
63710226--63710410	79	2.3	81	80	8	209	25	28	22	23	1.99
63721197--63722063	207	4.3	207	91	2	1338	32	17	21	28	1.96
63721699--63722135	191	2.3	190	91	2	705	33	17	22	27	1.96
63723612--63723667	28	2.0	28	82	0	67	32	8	0	58	1.29
63723718--63723759	17	2.5	17	80	3	50	35	4	0	59	1.19
63723734--63723781	22	2.1	22	84	7	60	31	4	0	64	1.12
63723744--63723778	12	2.9	12	91	0	61	25	2	0	71	1.00
63724076--63724118	22	2.0	22	90	0	68	20	2	2	74	1.04
63724222--63724274	22	2.3	23	90	6	90	26	0	9	64	1.24
63731749--63731815	33	2.0	33	100	0	134	40	2	26	29	1.71
63737604--63737641	14	2.7	14	87	0	58	57	2	5	34	1.35
63737801--63737905	7	15.0	7	69	15	58	61	0	3	34	1.14
63737745--63737919	15	10.9	16	65	25	61	60	1	5	32	1.29
63737808--63737905	41	2.4	41	76	19	98	62	0	4	33	1.14
63748191--63748220	15	1.9	16	93	6	53	13	6	6	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63749191--63749249	18	3.2	18	75	13	57	79	3	3	13	0.98
63749308--63749367	22	2.7	22	77	10	59	76	1	10	11	1.09
63749440--63749468	14	2.0	15	93	6	51	79	0	0	20	0.74
63751222--63751258	18	2.1	18	94	0	65	13	21	13	51	1.75
63755905--63755953	16	2.8	18	87	12	84	73	0	0	26	0.83
63755886--63756038	20	7.4	20	66	15	71	69	1	2	25	1.11
63769628--63769657	15	2.0	15	93	0	51	20	43	13	23	1.86
63769740--63769776	16	2.3	16	100	0	74	56	5	10	27	1.55
63797408--63797663	127	2.0	127	99	0	503	31	13	25	30	1.93
63809026--63809165	75	1.9	75	89	3	219	32	18	19	30	1.96
63823656--63823685	15	1.9	16	93	6	53	76	0	0	23	0.78
63826527--63826568	22	1.9	22	85	9	59	59	2	2	35	1.23
63826531--63826634	10	11.1	9	70	21	54	60	4	0	33	1.24
63826549--63826626	28	2.8	28	79	15	88	61	6	0	32	1.21
63826572--63826635	18	3.6	18	72	17	53	62	4	0	32	1.16
63827737--63827783	23	2.0	24	87	4	69	31	12	12	42	1.81
63833876--63834051	49	3.6	48	79	7	167	28	22	29	19	1.98
63833876--63834103	98	2.3	98	84	5	275	28	22	28	20	1.99
63833927--63834103	49	3.6	47	75	11	144	27	23	28	20	1.99
63835570--63835630	26	2.3	26	80	5	79	42	8	13	36	1.74
63841213--63841250	16	2.4	16	86	4	60	65	5	28	0	1.14
63841951--63842076	63	2.0	63	93	0	216	29	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63849570--63849623	15	3.9	14	75	7	56	68	1	27	1	1.10
63855697--63855728	9	3.6	9	95	0	55	9	18	0	71	1.12
63867888--63867950	30	2.1	30	91	5	101	57	14	3	25	1.52
63869786--63870008	40	5.6	40	92	1	351	28	27	21	22	1.99
63873278--63873366	43	2.1	43	100	0	178	39	8	13	38	1.76
63873621--63873828	46	4.5	46	80	6	222	26	19	29	23	1.98
63873762--63873888	47	2.7	48	81	6	145	32	19	25	22	1.98
63873626--63873883	140	1.8	140	81	6	317	29	19	27	23	1.98
63875434--63875465	14	2.3	14	94	0	55	31	46	18	3	1.65
63875966--63876094	43	3.0	44	76	6	147	17	32	31	17	1.94
63878275--63878346	5	14.8	5	74	21	64	38	1	4	55	1.28
63878304--63878346	19	2.3	19	92	8	70	41	2	0	55	1.12
63878356--63878389	17	2.0	17	94	0	59	79	0	17	2	0.86
63878356--63878389	9	3.9	9	84	7	52	79	0	17	2	0.86
63878866--63878982	43	2.7	43	86	4	155	13	28	39	18	1.89
63886883--63887054	42	4.0	42	84	4	186	18	25	33	22	1.97
63886883--63887054	84	2.0	86	83	4	215	18	25	33	22	1.97
63887530--63887563	17	2.0	17	100	0	68	17	17	35	29	1.93
63898395--63898632	49	4.8	49	80	3	269	25	18	25	31	1.97
63900623--63900671	22	2.0	26	85	14	70	30	4	4	61	1.33
63906913--63907009	43	2.3	43	85	0	131	32	17	24	24	1.97
63907790--63907897	31	3.5	31	89	0	162	22	23	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63908104--63908210	49	2.2	49	86	6	146	24	23	24	28	2.00
63908117--63908210	25	3.8	25	94	1	163	24	23	26	25	2.00
63908257--63908294	11	3.6	11	79	13	53	31	18	13	36	1.89
63908341--63908388	25	1.9	25	86	0	69	29	16	22	31	1.96
63911439--63911611	46	3.8	45	77	15	192	20	21	28	29	1.98
63911436--63911606	93	1.8	93	93	0	297	20	21	29	28	1.98
63914001--63914070	35	2.0	35	97	0	131	28	21	22	27	1.99
63919985--63920198	47	4.6	47	90	0	320	32	8	30	28	1.87
63923516--63924417	46	19.6	46	96	2	1650	19	25	28	26	1.99
63930104--63930187	31	2.7	31	88	1	125	23	23	17	34	1.96
63930412--63930500	25	3.6	25	92	4	137	23	23	25	26	2.00
63930547--63930584	11	3.6	11	79	13	53	31	18	13	36	1.89
63930631--63930678	25	1.9	25	82	0	60	29	16	20	33	1.95
63932467--63932571	46	2.2	49	86	6	144	25	24	14	35	1.93
63936793--63936914	50	2.5	49	84	5	151	27	22	14	35	1.94
63950832--63951043	40	5.3	40	85	5	243	24	20	27	27	1.99
63954374--63954732	46	7.6	46	75	12	204	28	17	29	24	1.97
63954466--63954732	48	5.6	47	76	10	176	28	17	28	25	1.98
63954374--63954732	98	3.8	94	75	14	255	28	17	29	24	1.97
63955886--63955934	21	2.3	21	92	0	80	14	38	26	20	1.91
63958135--63958205	36	2.0	36	100	0	142	42	11	8	38	1.71
63958942--63958968	13	2.1	13	100	0	54	22	33	29	14	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63961419--63961473	27	2.0	27	100	0	110	30	10	29	29	1.91
63966844--63966928	30	2.8	30	90	0	125	31	7	25	35	1.83
63967259--63967390	46	2.8	46	85	6	151	31	18	29	20	1.97
63967268--63967434	46	3.6	45	81	8	140	28	17	30	23	1.97
63967399--63967582	48	3.8	48	78	5	190	27	14	29	28	1.95
63969972--63970104	28	5.2	27	62	27	76	22	18	29	29	1.98
63969924--63970148	49	4.5	49	84	3	263	24	18	28	29	1.98
63969917--63970155	99	2.4	100	83	3	295	23	19	28	28	1.98
63972845--63972988	77	1.9	75	80	11	168	34	23	20	22	1.97
63984973--63985047	28	2.6	28	83	6	89	28	14	26	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297