genome.fa.s25.2.7.7.80.10.50.1000.265.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  265  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90369599--90369661	27	2.3	26	76	10	63	38	0	11	50	1.38
90371482--90371564	40	2.1	39	86	2	112	27	16	27	27	1.97
90371575--90371675	28	3.6	28	84	0	121	30	11	30	26	1.92
90373736--90373786	27	1.9	26	84	4	66	25	23	11	39	1.89
90377492--90377544	29	1.9	27	85	11	72	64	1	9	24	1.34
90377802--90377865	25	2.6	25	75	7	60	56	3	7	32	1.44
90384662--90384708	15	3.2	15	71	17	53	53	14	8	23	1.69
90384663--90384731	29	2.3	29	85	5	84	53	15	11	18	1.72
90393490--90393667	27	6.6	27	83	3	205	26	15	28	29	1.96
90393491--90393646	82	1.9	81	88	3	233	26	15	28	29	1.96
90393487--90393667	82	2.2	81	83	2	229	27	15	27	29	1.96
90408250--90408360	54	2.1	54	89	0	168	34	18	17	30	1.93
90423302--90423356	27	2.0	27	100	0	110	41	7	18	32	1.78
90428783--90428816	13	2.5	13	90	9	50	35	2	14	47	1.60
90430042--90430167	40	3.2	40	89	1	182	23	23	27	24	2.00
90438686--90438732	21	2.2	22	92	3	78	21	19	38	21	1.94
90446377--90446553	40	4.4	40	82	7	209	23	22	27	26	1.99
90446377--90446553	80	2.2	80	87	5	243	23	22	27	26	1.99
90451334--90451470	46	3.0	46	90	0	211	26	31	8	33	1.87
90451444--90451627	47	4.1	47	79	13	154	27	28	10	34	1.89
90451504--90451627	38	3.0	40	86	12	162	28	26	10	34	1.89
90451547--90451624	25	3.2	25	66	29	69	30	28	8	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90454898--90455054	28	5.5	28	74	6	127	29	28	19	21	1.98
90454925--90455026	29	3.6	29	77	7	109	29	30	17	22	1.97
90454900--90455058	57	2.8	57	88	2	221	30	28	19	21	1.98
90455086--90455220	40	3.4	40	91	0	225	26	25	20	26	1.99
90455348--90455405	29	2.0	29	96	0	107	32	20	6	39	1.79
90456750--90457006	46	5.6	46	86	0	370	21	34	12	31	1.91
90456754--90457006	92	2.8	92	96	0	461	21	34	13	31	1.91
90457016--90457118	47	2.5	38	74	24	116	27	28	11	33	1.91
90457033--90457163	47	2.8	47	96	0	235	25	29	10	34	1.90
90459769--90459810	19	2.2	19	87	8	59	33	11	2	52	1.51
90460202--90460338	60	2.3	60	83	8	163	24	26	20	28	1.99
90464789--90465002	47	4.6	47	92	0	347	31	12	29	26	1.92
90468749--90468786	19	2.0	19	85	10	51	28	7	23	39	1.83
90470267--90470309	22	2.0	22	86	8	63	53	4	0	41	1.21
90472085--90472256	61	2.8	61	98	0	326	30	26	11	32	1.91
90475734--90475804	29	2.4	31	79	9	85	29	14	9	46	1.76
90478067--90478127	30	2.0	30	87	0	86	40	4	24	29	1.76
90478862--90479032	67	2.6	64	76	8	184	28	17	30	23	1.97
90481862--90481886	11	2.3	11	100	0	50	56	0	16	28	1.41
90483980--90484100	6	19.7	6	69	14	77	48	13	19	19	1.80
90483980--90484100	37	3.4	37	75	13	137	48	13	19	19	1.80
90483992--90484100	31	3.3	31	77	14	119	47	13	19	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90484241--90484304	33	2.0	32	84	3	83	37	20	21	20	1.94
90484607--90484935	27	12.2	27	91	0	462	40	8	22	28	1.83
90484915--90485061	54	2.7	52	78	10	143	34	8	19	38	1.82
90484930--90485082	27	5.7	27	81	1	146	32	9	20	37	1.84
90485024--90485098	27	2.8	27	81	2	71	38	9	14	37	1.79
90486899--90486970	35	2.1	35	97	0	135	30	26	16	26	1.97
90492478--90492524	23	2.0	23	100	0	94	42	23	8	25	1.82
90495141--90495480	43	8.0	44	80	8	355	31	27	15	25	1.96
90495141--90495480	129	2.7	129	86	1	443	31	27	15	25	1.96
90500615--90500670	27	2.1	27	96	0	103	37	19	16	26	1.92
90506601--90506641	20	2.0	20	100	0	82	43	4	24	26	1.74
90512553--90512700	67	2.2	66	80	8	165	31	16	29	21	1.96
90512575--90512758	67	2.8	65	77	10	198	29	16	30	22	1.96
90517431--90517515	37	2.3	37	85	0	107	30	18	23	27	1.98
90517497--90517596	48	2.1	48	82	0	119	26	17	27	30	1.97
90519657--90519773	42	2.8	40	76	7	110	29	15	25	29	1.96
90531114--90531251	44	3.2	41	81	9	143	24	17	25	32	1.97
90531574--90531625	26	2.0	26	100	0	104	30	7	15	46	1.74
90531825--90531877	23	2.3	23	74	6	54	16	3	28	50	1.62
90534848--90534891	22	2.0	22	95	0	79	22	15	18	43	1.88
90535074--90535297	53	4.2	54	74	6	197	19	23	16	40	1.91
90542144--90542418	137	2.0	137	94	0	487	32	18	18	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90553973--90554166	53	3.6	54	75	6	160	20	23	17	38	1.93
90556628--90556740	43	2.6	43	85	0	154	14	25	38	22	1.91
90559614--90559647	16	2.0	17	88	11	52	47	5	5	41	1.52
90562113--90562166	22	2.5	22	87	0	81	16	31	33	18	1.93
90563722--90563815	47	2.0	48	87	2	136	27	31	18	22	1.97
90568810--90569037	40	5.7	40	87	5	336	26	27	20	25	1.99
90572169--90572319	28	5.4	28	91	1	214	25	12	28	33	1.92
90576019--90576194	40	4.4	40	80	6	207	24	21	27	26	1.99
90576019--90576194	79	2.2	79	84	5	230	24	21	27	26	1.99
90576422--90576463	22	1.9	22	85	9	59	33	9	14	42	1.78
90586554--90586607	24	2.2	24	84	12	67	29	37	16	16	1.91
90590199--90590307	37	2.9	37	94	0	182	27	31	18	22	1.97
90590454--90591418	48	20.1	48	99	0	1894	31	26	6	35	1.81
90600244--90600520	137	2.0	137	99	0	545	31	20	11	36	1.89
90605592--90605675	39	2.2	39	91	0	141	11	25	7	55	1.61
90605672--90605716	22	2.0	22	100	0	90	13	22	4	60	1.51
90609279--90609327	21	2.3	23	82	10	59	34	10	26	28	1.89
90626234--90626411	27	6.6	27	83	3	178	29	28	15	26	1.96
90626255--90626410	82	1.9	81	86	3	224	28	28	16	26	1.97
90626234--90626410	54	3.3	54	81	6	196	29	28	15	26	1.96
90634478--90634684	64	3.2	64	80	8	222	32	16	28	22	1.96
90634478--90634630	66	2.3	65	84	6	182	33	16	28	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90636872--90637038	46	3.6	46	83	4	167	28	19	28	24	1.98
90636963--90637183	95	2.3	95	80	14	242	25	19	28	25	1.99
90644993--90645205	46	4.6	45	78	12	177	29	18	28	23	1.98
90646207--90646291	41	2.1	41	88	0	125	20	18	40	21	1.92
90651623--90652630	144	7.0	144	100	0	2016	36	12	25	25	1.91
90655095--90655130	17	2.1	17	100	0	72	27	16	36	19	1.93
90659009--90659103	40	2.4	40	85	0	118	24	17	24	33	1.96
90659090--90659162	28	2.6	28	88	0	110	23	13	35	27	1.92
90666566--90666660	40	2.4	40	82	3	102	22	16	27	33	1.95
90666649--90666719	28	2.5	28	90	0	115	26	15	30	26	1.96
90671311--90671423	27	4.2	26	84	8	136	37	23	23	16	1.94
90671311--90671423	55	2.1	54	86	5	156	37	23	23	16	1.94
90674129--90674179	21	2.4	22	80	9	70	35	5	35	23	1.79
90674553--90674586	17	2.0	17	94	0	59	20	17	8	52	1.71
90686146--90686329	40	4.6	41	81	12	208	25	22	27	25	2.00
90686146--90686329	79	2.3	81	82	11	222	25	22	27	25	2.00
90686198--90686362	79	2.1	79	82	8	194	26	21	27	24	1.99
90707986--90708102	41	2.9	41	89	2	184	29	22	20	28	1.98
90709569--90709704	68	2.0	68	98	0	263	44	18	8	28	1.80
90715029--90715165	69	2.0	69	100	0	274	35	26	16	21	1.94
90727963--90728070	52	2.1	52	100	0	216	34	25	11	29	1.90
90738304--90738657	179	2.0	179	97	0	663	35	23	9	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90742819--90743051	96	2.4	96	92	0	376	25	14	28	30	1.95
90742819--90743073	48	5.3	48	84	2	307	25	14	28	30	1.95
90744646--90744818	46	3.7	46	79	13	219	21	20	27	29	1.98
90744643--90744813	93	1.8	93	97	0	324	21	21	28	28	1.98
90747459--90747488	14	2.2	13	94	5	51	53	13	0	33	1.40
90761978--90762087	55	2.0	55	91	3	177	21	17	32	28	1.96
90781098--90781139	15	2.8	16	82	10	52	80	7	4	7	1.00
90784425--90784650	44	4.8	46	78	12	219	28	17	30	23	1.97
90785615--90785679	19	3.5	19	79	12	80	46	13	21	18	1.84
90785631--90785710	6	13.0	6	72	15	65	47	16	17	18	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297