genome.fa.s25.2.7.7.80.10.50.1000.286.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  286  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97304415--97304610	81	2.4	81	80	6	218	41	9	19	28	1.83
97304407--97304610	54	3.8	54	80	6	225	41	9	19	29	1.84
97305472--97305658	46	4.0	46	78	5	169	23	26	19	31	1.98
97324107--97324388	50	5.6	50	77	5	264	31	25	15	26	1.96
97333682--97334179	43	11.6	43	84	3	554	20	18	23	37	1.94
97336153--97336323	93	1.8	93	96	0	315	28	29	21	21	1.98
97336145--97336320	46	3.8	46	80	12	225	28	28	21	21	1.98
97338712--97338800	30	3.0	30	79	11	94	56	15	17	10	1.67
97338712--97338794	15	5.6	14	73	10	58	55	16	18	9	1.68
97338723--97338800	15	5.2	15	75	9	70	55	15	17	11	1.69
97348726--97348866	9	14.8	9	68	16	61	58	2	4	35	1.30
97348638--97348740	50	2.1	49	80	10	111	60	1	2	34	1.23
97348727--97348772	20	2.3	20	84	0	56	65	4	2	28	1.23
97348726--97348801	29	2.6	31	77	8	79	63	2	5	28	1.30
97348710--97348832	49	2.6	48	78	14	139	56	2	4	35	1.34
97348796--97348868	28	2.7	28	79	8	71	54	1	2	41	1.23
97348823--97348872	19	2.7	19	84	12	68	60	0	0	40	0.97
97356301--97356345	23	2.0	22	91	4	72	8	8	42	40	1.67
97362437--97362512	37	2.1	37	97	0	143	42	21	18	18	1.90
97366364--97366519	42	3.7	42	83	3	197	27	24	17	30	1.98
97366364--97366519	85	1.8	84	86	4	224	27	24	17	30	1.98
97367468--97367531	31	2.1	31	100	0	128	32	17	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97371409--97371458	25	2.0	25	100	0	100	32	4	12	52	1.57
97371691--97371731	20	2.0	20	90	0	64	7	21	21	48	1.74
97372813--97372876	32	2.0	32	93	0	110	32	28	15	23	1.95
97377752--97377788	19	1.9	19	88	0	56	43	2	16	37	1.62
97379234--97379290	15	3.9	15	83	2	71	40	0	8	50	1.33
97380334--97380390	15	3.9	15	83	2	71	40	0	8	50	1.33
97381021--97381062	20	2.2	20	87	12	61	50	0	21	28	1.49
97381583--97381612	14	2.1	15	93	6	53	36	0	13	50	1.42
97391119--97391321	56	3.6	55	81	10	216	24	13	16	45	1.84
97391124--97391277	52	2.9	52	83	7	175	24	15	16	43	1.87
97391796--97392018	89	2.5	89	86	4	299	23	4	12	59	1.52
97391796--97392039	88	2.7	89	85	3	269	25	4	11	59	1.51
97393344--97393386	20	2.2	20	83	8	52	20	11	4	62	1.46
97393365--97393425	32	1.9	32	93	0	104	21	16	8	54	1.68
97393623--97393656	17	2.0	17	100	0	68	29	11	5	52	1.61
97393686--97393724	16	2.4	16	86	4	51	15	12	5	66	1.41
97393700--97393758	23	2.6	21	77	15	64	16	13	1	67	1.30
97393430--97393806	120	3.2	118	78	13	386	25	11	2	59	1.47
97393778--97393917	39	3.3	39	69	21	111	22	12	2	62	1.40
97393830--97393863	17	2.0	17	94	0	59	29	14	2	52	1.56
97394054--97394097	17	2.6	17	81	0	61	31	4	0	63	1.14
97394038--97394102	28	2.3	28	91	2	103	30	6	0	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97394060--97394114	28	2.0	28	88	0	83	34	9	1	54	1.43
97394308--97394358	6	8.7	6	78	8	52	37	15	1	45	1.58
97394292--97394338	23	2.0	23	84	8	60	40	12	2	44	1.54
97397337--97397547	111	1.8	111	84	7	280	36	17	17	28	1.92
97397453--97397552	50	2.0	52	86	7	143	39	19	19	23	1.93
97409408--97409450	17	2.6	17	81	3	52	41	20	4	32	1.73
97409669--97409726	30	2.0	29	82	3	71	31	20	8	39	1.83
97415138--97415198	30	2.0	30	87	0	86	29	24	8	37	1.84
97430749--97431064	48	6.6	48	89	0	445	27	17	28	26	1.98
97430700--97431064	96	3.8	96	86	3	459	26	17	28	26	1.98
97434495--97434529	14	2.5	14	95	0	61	45	0	17	37	1.48
97438618--97438932	48	6.6	48	86	6	374	25	18	29	26	1.98
97438618--97438879	94	2.7	95	88	5	361	25	18	29	27	1.98
97438618--97438932	94	3.3	94	80	11	347	25	18	29	26	1.98
97438660--97438927	142	1.9	142	89	3	414	25	18	28	27	1.98
97444363--97444500	70	2.0	70	94	0	240	44	14	12	28	1.81
97475390--97475715	47	6.9	45	75	13	232	23	30	20	25	1.98
97475390--97475706	141	2.2	140	81	8	340	23	30	20	25	1.99
97475392--97475724	94	3.5	94	78	11	331	23	30	20	25	1.98
97476412--97476436	12	2.1	12	100	0	50	60	16	8	16	1.58
97487197--97487226	14	2.1	15	93	6	53	23	0	20	56	1.42
97489721--97489941	46	4.8	46	98	0	415	30	28	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97499029--97499185	43	3.6	42	79	7	156	30	23	19	26	1.98
97499029--97499190	86	1.9	85	82	3	200	31	22	19	26	1.98
97505927--97506049	43	2.9	43	74	12	110	33	24	16	26	1.96
97505915--97506028	43	2.7	43	78	5	115	32	23	16	27	1.96
97509046--97509121	24	3.2	24	86	0	116	18	38	27	15	1.91
97529720--97529751	9	3.8	9	84	16	50	56	37	0	6	1.25
97529720--97529751	16	2.0	16	100	0	64	56	37	0	6	1.25
97531228--97531361	29	4.7	28	81	9	155	26	15	32	25	1.95
97531228--97531361	57	2.4	56	85	7	164	26	15	32	25	1.95
97532868--97533052	40	4.7	39	87	4	246	24	28	23	23	2.00
97532861--97533055	79	2.5	80	86	2	268	24	27	23	24	2.00
97535502--97535712	40	5.3	40	89	4	239	23	20	27	28	1.99
97562116--97562168	26	2.0	26	96	0	97	11	35	11	41	1.77
97566136--97566172	18	2.1	18	90	5	58	67	0	0	32	0.91
97566424--97566481	22	2.7	21	76	10	53	41	18	3	36	1.68
97566460--97566496	19	1.9	19	100	0	74	35	16	10	37	1.83
97566463--97566504	19	2.3	19	88	8	61	38	11	14	35	1.83
97566615--97566654	21	2.0	20	85	5	53	10	2	15	72	1.21
97567136--97567178	16	2.7	16	85	0	68	58	20	13	6	1.59
97567390--97567552	29	5.7	29	84	2	197	26	13	32	26	1.94
97567397--97567558	58	2.8	57	83	5	218	25	13	35	25	1.93
97569850--97569961	56	2.0	56	92	0	188	33	19	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97570676--97570850	46	3.8	46	80	8	178	30	21	27	21	1.98
97570722--97570899	47	3.8	48	80	8	154	30	21	27	20	1.98
97570675--97570876	93	2.2	93	81	3	228	31	20	26	21	1.98
97583085--97583109	13	1.9	13	100	0	50	40	24	4	32	1.73
97587065--97587290	80	2.8	78	81	10	260	26	26	21	26	1.99
97587065--97587290	120	1.9	120	82	9	291	26	26	21	26	1.99
97587065--97587290	40	5.7	39	83	7	235	26	26	21	26	1.99
97592250--97592472	39	5.7	40	85	8	266	25	22	27	24	2.00
97592250--97592472	79	2.8	81	84	9	282	25	22	27	24	2.00
97592250--97592505	79	3.3	79	81	10	217	26	21	27	24	1.99
97615222--97615306	44	1.9	44	97	0	161	31	16	22	29	1.96
97620035--97620096	29	2.2	28	91	8	108	61	6	4	27	1.41
97629453--97629489	17	2.2	17	100	0	74	35	18	16	29	1.93
97629534--97629621	46	1.9	46	92	0	149	28	20	6	44	1.77
97629580--97629716	54	2.5	56	85	5	181	23	24	13	38	1.90
97630970--97631007	20	1.9	20	94	0	67	34	28	10	26	1.90
97632362--97632414	27	2.0	27	100	0	106	49	15	15	20	1.80
97633042--97633254	105	2.0	105	95	1	383	30	18	16	33	1.93
97651677--97651805	46	2.8	45	78	8	134	22	29	19	28	1.98
97683735--97683798	25	2.6	25	92	2	103	20	23	20	35	1.96
97704819--97704896	24	3.2	24	80	5	77	23	23	19	34	1.96
97705080--97705165	20	4.4	20	77	5	95	31	4	19	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97707069--97707132	25	2.6	25	84	0	74	45	18	14	21	1.85
97708596--97708649	12	4.0	13	76	13	56	59	3	1	35	1.26
97708758--97708794	18	1.9	18	89	10	56	40	5	0	54	1.24
97709900--97710014	43	2.7	42	78	2	131	31	18	20	29	1.96
97711471--97711552	41	2.0	41	92	0	137	51	13	9	25	1.71
97720121--97720191	27	2.6	27	70	16	74	43	16	16	22	1.87
97720196--97720254	22	2.7	22	83	0	73	35	23	23	16	1.95
97724208--97724356	42	3.5	42	77	4	138	30	22	16	30	1.96
97727838--97728060	39	5.7	40	86	7	273	25	22	27	24	2.00
97727838--97728060	79	2.8	81	85	8	282	25	22	27	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297