Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  129  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44604232--44604262
15
2.1
15
100
0
62
29
12
25
32
1.93
44604534--44604591
22
2.6
21
78
8
62
46
3
1
48
1.29
44604576--44604637
31
2.1
28
88
8
88
61
3
0
35
1.12
44604660--44604722
28
2.3
26
84
10
81
50
1
0
47
1.10
44604699--44604788
35
2.6
34
83
11
112
58
0
1
40
1.05
44604755--44604801
23
2.0
24
91
4
78
55
0
0
44
0.99
44604848--44605062
21
10.8
21
67
18
61
53
2
2
41
1.28
44604906--44604987
21
3.9
21
83
6
94
54
0
2
42
1.13
44604923--44604987
21
3.2
20
87
10
96
58
0
1
40
1.07
44604590--44605070
236
2.0
237
88
6
726
53
2
2
41
1.27
44605074--44605115
20
2.1
20
86
8
59
76
0
2
21
0.90
44605092--44605162
26
2.6
26
82
12
81
78
4
5
11
1.05
44605080--44605157
10
8.0
9
71
20
50
78
3
5
12
1.06
44605106--44605146
21
1.9
21
85
5
55
80
7
4
7
1.02
44605561--44605617
15
3.5
15
71
17
51
45
0
3
50
1.18
44605593--44605657
25
2.6
26
81
16
75
52
0
0
47
1.00
44607503--44607575
24
3.0
24
89
0
119
12
46
4
36
1.61
44630814--44630852
20
2.0
20
84
0
51
53
0
2
43
1.14
44633375--44633412
19
2.1
19
90
5
60
44
13
0
42
1.43
44635714--44635775
30
2.1
30
93
0
106
33
1
6
58
1.34
44638331--44638506
46
3.8
46
79
12
216
20
21
29
28
1.98
44638328--44638499
93
1.8
93
96
0
317
20
21
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44645902--44646077
46
3.8
46
77
12
198
22
21
27
29
1.99
44645899--44646069
93
1.8
93
93
0
297
22
21
26
28
1.99
44648770--44648815
3
15.3
3
95
0
83
69
0
30
0
0.89
44649122--44649161
18
2.2
19
95
4
73
30
25
17
27
1.97
44649997--44650060
16
4.2
16
70
27
50
68
1
4
25
1.17
44653832--44653856
6
4.2
6
100
0
50
16
16
0
68
1.22
44655028--44655070
19
2.2
20
87
4
61
41
9
20
27
1.83
44656788--44656843
3
18.7
3
75
14
53
64
1
3
30
1.21
44656788--44656861
31
2.5
28
77
14
78
64
1
4
29
1.20
44658408--44658453
24
1.9
24
86
8
67
56
39
0
4
1.19
44663175--44663307
47
2.8
46
80
14
155
56
5
8
30
1.51
44663445--44663484
11
3.6
11
93
0
71
37
0
17
45
1.49
44663447--44663509
22
2.9
22
81
9
76
41
1
17
39
1.59
44663445--44663492
11
4.4
11
79
10
53
39
0
16
43
1.48
44665065--44665103
20
2.0
20
84
0
51
53
0
2
43
1.14
44668228--44668272
20
2.2
20
92
0
72
24
11
11
53
1.68
44673637--44673668
17
1.9
16
93
6
55
37
6
0
56
1.25
44673953--44673995
20
2.2
20
86
0
59
55
0
2
41
1.12
44676216--44676265
26
1.9
27
84
8
68
24
16
22
38
1.93
44677789--44677819
15
2.1
15
100
0
62
32
41
0
25
1.56
44678750--44678776
9
3.0
9
100
0
54
66
11
11
11
1.45
44682253--44682296
3
14.7
3
100
0
88
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44683570--44683624
27
2.0
27
82
6
67
43
1
1
52
1.22
44685620--44685728
48
2.3
48
95
0
191
27
15
13
43
1.85
44694995--44695079
6
14.2
6
78
0
62
22
7
15
55
1.64
44695004--44695079
24
3.2
25
77
7
77
23
6
14
55
1.63
44695114--44695238
48
2.6
48
88
0
169
26
13
14
45
1.82
44696149--44696195
21
2.2
21
85
7
60
36
38
14
10
1.81
44696654--44696703
23
2.2
23
88
0
73
32
16
14
38
1.88
44697347--44697390
23
1.9
23
90
0
70
0
40
0
59
0.98
44697347--44697387
20
2.0
20
85
0
55
0
41
0
58
0.98
44697375--44697404
9
3.4
9
90
9
53
0
20
0
80
0.72
44698224--44698255
17
1.9
16
93
6
55
37
6
0
56
1.25
44698540--44698582
20
2.2
20
86
0
59
55
0
2
41
1.12
44704415--44704836
210
2.0
210
87
0
601
30
25
13
30
1.94
44706464--44706488
3
8.3
3
100
0
50
68
0
0
32
0.90
44706603--44706629
5
5.4
5
100
0
54
22
18
40
18
1.91
44707414--44707492
38
2.1
38
97
0
149
40
10
26
22
1.86
44709986--44710023
17
2.2
17
90
0
58
34
2
2
60
1.24
44711539--44711576
17
2.2
17
90
0
58
34
2
2
60
1.24
44716107--44716169
25
2.6
25
79
2
74
50
20
1
26
1.57
44718002--44718142
70
2.0
70
98
0
273
28
8
12
51
1.68
44719606--44720466
286
3.0
286
99
0
1713
37
14
21
26
1.91
44720915--44720956
13
3.2
13
83
12
59
52
9
16
21
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44725535--44725970
114
3.8
113
80
5
441
25
19
21
33
1.96
44730540--44730791
93
2.7
93
85
2
321
41
15
13
30
1.84
44732936--44732994
28
2.1
28
96
0
109
32
16
20
30
1.95
44733089--44733333
38
6.9
38
78
15
263
39
18
2
40
1.63
44733058--44733293
68
3.5
68
100
0
472
40
19
1
38
1.62
44733089--44733333
106
2.3
106
78
14
247
39
18
2
40
1.63
44733649--44733709
30
2.0
30
96
0
113
44
18
3
34
1.66
44739211--44739267
30
1.9
30
82
7
71
38
15
8
36
1.79
44752113--44752148
5
7.0
5
96
3
63
41
0
0
58
0.98
44752073--44752148
15
4.6
16
72
22
68
43
0
3
52
1.19
44752154--44752183
16
1.9
15
93
6
51
73
0
20
6
1.05
44753228--44753312
21
4.0
22
83
9
113
16
22
24
36
1.94
44753228--44753312
44
2.0
41
86
6
116
16
22
24
36
1.94
44754014--44754064
17
3.0
17
97
0
93
39
11
13
35
1.82
44755183--44755333
42
3.6
42
83
4
196
29
25
17
28
1.97
44756051--44756076
11
2.4
11
100
0
52
65
19
7
7
1.43
44756986--44757024
18
2.2
17
86
13
53
33
0
20
46
1.51
44757250--44757302
23
2.3
23
83
6
72
22
16
24
35
1.95
44759843--44760044
71
2.8
71
82
1
226
31
23
17
27
1.97
44764595--44764652
28
2.0
30
83
12
77
65
0
24
10
1.23
44779670--44779737
23
3.1
23
72
20
63
63
13
0
23
1.30
44786372--44786443
36
2.0
36
97
0
135
26
11
19
43
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44786486--44786523
6
6.5
6
93
3
51
44
0
21
34
1.52
44786613--44786716
51
2.0
51
98
0
199
27
10
11
50
1.72
44792587--44792637
3
17.3
3
75
4
50
33
1
3
60
1.26
44792761--44792787
3
9.0
3
100
0
54
33
0
0
66
0.92
44814593--44815177
296
2.0
296
99
0
1152
32
17
19
29
1.95
44815093--44815413
132
2.4
132
91
0
507
26
15
26
31
1.96
44815250--44815485
88
2.7
88
81
5
237
27
14
27
30
1.95
44815101--44815441
44
7.8
43
71
8
213
26
14
26
31
1.95
44815118--44815506
44
8.8
44
70
9
195
27
15
26
30
1.96
44815093--44815466
132
2.8
130
84
6
450
26
15
25
31
1.96
44815283--44815506
88
2.5
87
80
7
256
28
14
25
30
1.95
44819772--44819829
30
1.9
30
89
0
89
27
13
22
36
1.92
44824715--44824755
15
2.8
15
88
3
57
75
4
7
12
1.16
44825485--44825559
26
2.9
26
80
13
75
41
36
5
17
1.72
44825755--44825806
28
1.9
26
84
7
68
73
9
13
3
1.23
44826817--44826912
47
2.0
47
89
0
147
34
6
9
50
1.60
44829393--44829423
16
1.9
16
100
0
62
58
6
0
35
1.24
44830857--44830898
16
2.5
17
80
7
50
71
16
9
2
1.23
44831920--44832214
126
2.4
126
88
1
441
33
18
21
27
1.96
44832754--44832784
14
2.2
14
94
0
53
29
51
6
12
1.65
44835404--44835500
34
2.7
36
87
7
128
48
6
3
42
1.44
44835919--44835961
18
2.4
18
88
0
59
44
9
30
16
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44836586--44836610
7
3.6
7
100
0
50
60
12
0
28
1.32
44837567--44837629
28
2.2
29
81
13
69
63
1
3
31
1.19
44837831--44837873
22
2.0
22
81
9
52
51
0
27
20
1.48
44838468--44838578
54
2.1
52
83
9
136
33
7
10
48
1.65
44841875--44841899
7
3.6
7
100
0
50
16
0
40
44
1.47
44842755--44842793
20
1.9
20
89
5
60
79
0
7
12
0.93
44842735--44842799
15
4.4
14
72
18
51
75
4
4
15
1.13
44844385--44844448
16
3.8
16
78
12
65
73
1
7
17
1.14
44844385--44844457
25
3.1
25
72
22
68
72
1
8
17
1.16
44846362--44846487
50
2.5
50
84
0
162
20
27
23
27
1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297