genome.fa.s25.2.7.7.80.10.50.1000.287.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  287  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97727838--97728093	79	3.3	79	82	9	224	26	21	27	24	1.99
97729555--97729615	30	2.0	30	96	0	113	45	6	11	36	1.66
97751125--97751234	56	2.0	56	92	0	184	30	16	15	37	1.90
97751128--97751248	56	2.2	56	84	0	152	33	17	15	33	1.91
97755727--97755794	34	2.0	34	97	0	127	17	22	19	41	1.91
97761392--97761563	93	1.8	93	96	0	317	27	29	21	20	1.98
97761385--97761560	46	3.8	46	79	12	216	28	29	21	20	1.98
97769945--97769973	14	2.1	14	100	0	58	27	0	20	51	1.47
97777279--97777327	25	1.9	26	95	4	91	28	6	24	40	1.79
97778200--97778248	24	2.0	24	81	14	57	42	10	14	32	1.79
97790019--97790058	18	2.2	19	90	4	64	35	7	15	42	1.75
97798401--97798661	44	5.9	44	77	2	218	39	17	24	18	1.92
97798619--97798713	28	3.4	27	91	2	136	35	13	27	23	1.92
97798573--97798758	101	1.8	101	83	4	250	37	16	27	18	1.92
97802623--97802807	49	3.8	50	85	5	209	24	15	31	27	1.96
97806541--97806579	17	2.2	17	86	4	51	10	25	48	15	1.76
97814651--97814689	18	2.2	18	90	0	60	20	5	12	61	1.50
97816055--97816106	27	2.0	26	82	10	63	34	1	17	46	1.59
97830160--97830275	53	2.2	52	92	1	187	29	11	12	47	1.75
97831061--97831095	16	2.2	16	94	0	61	34	25	22	17	1.96
97831061--97831103	16	2.7	16	85	0	50	37	23	23	16	1.94
97831166--97831288	28	4.4	28	84	2	138	42	17	22	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97831364--97831407	16	2.8	16	89	0	61	34	18	22	25	1.96
97833570--97833652	37	2.1	41	82	10	102	42	2	2	53	1.27
97833548--97833623	11	6.8	11	72	26	54	43	1	1	53	1.17
97833717--97833754	20	2.0	20	94	5	69	47	0	2	50	1.15
97834053--97834082	15	2.0	15	100	0	60	26	0	20	53	1.46
97846949--97847000	25	2.1	25	82	7	61	48	0	7	44	1.31
97848743--97848838	28	3.4	28	76	9	97	39	19	25	15	1.91
97848765--97848839	28	2.7	28	87	0	105	40	20	21	18	1.92
97848817--97848932	46	2.6	46	87	2	155	43	19	22	14	1.88
97848871--97848903	17	1.9	17	93	0	57	33	18	33	15	1.92
97848887--97848955	28	2.4	29	85	2	95	39	20	26	14	1.91
97859032--97859135	45	2.3	44	83	3	127	34	17	30	17	1.93
97859096--97859178	28	3.0	28	85	0	112	36	20	27	15	1.93
97860162--97860206	18	2.5	19	85	7	58	33	0	2	64	1.06
97867916--97868010	40	2.3	40	87	7	129	38	22	22	16	1.93
97869212--97869242	15	2.1	15	94	5	55	45	38	3	12	1.59
97869310--97869356	14	3.4	14	96	0	85	25	34	0	40	1.56
97873613--97873698	43	2.0	43	90	0	136	22	18	32	26	1.97
97874982--97875091	12	8.0	12	66	28	51	13	21	23	40	1.89
97874929--97875102	57	3.1	57	80	3	181	12	20	22	43	1.86
97874928--97875104	29	6.2	29	81	5	191	12	20	23	44	1.85
97877223--97877290	16	4.2	16	90	0	109	26	2	33	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97877526--97877560	18	2.0	17	88	5	52	54	0	0	45	0.99
97877420--97877729	157	2.0	157	96	0	575	44	2	4	48	1.38
97877663--97877704	15	2.7	16	82	14	52	52	2	0	45	1.13
97877672--97877713	15	2.9	15	82	10	52	52	0	0	47	1.00
97877481--97877732	82	3.2	82	65	23	219	47	3	3	46	1.34
97877484--97877814	157	2.1	154	79	7	346	47	3	3	45	1.39
97889472--97889499	7	4.0	7	100	0	56	71	28	0	0	0.86
97892784--97892948	89	1.9	89	93	0	285	37	8	23	30	1.84
97893444--97893519	29	2.7	29	91	2	118	14	21	21	43	1.87
97893896--97893924	8	3.6	8	100	0	58	37	27	10	24	1.88
97897616--97897643	14	2.0	14	100	0	56	42	0	0	57	0.99
97898232--97898261	4	7.5	4	92	0	51	26	26	0	46	1.53
97898227--97898261	12	2.8	12	91	4	52	28	28	0	42	1.56
97900682--97900795	35	3.3	35	83	2	140	14	12	30	42	1.82
97901444--97901476	15	2.3	14	94	5	57	57	0	24	18	1.40
97901740--97901773	17	2.1	16	88	5	50	29	14	29	26	1.95
97903507--97903775	48	5.6	48	85	1	324	20	28	21	28	1.98
97904107--97904164	30	1.9	31	85	3	82	31	20	6	41	1.79
97911225--97911498	48	5.7	48	74	7	218	22	27	20	29	1.98
97911226--97911510	96	3.0	97	81	6	296	23	27	19	29	1.98
97911225--97911498	144	1.9	144	81	3	336	22	27	20	29	1.98
97919334--97919392	23	2.5	23	80	2	73	35	18	20	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97922321--97922390	22	3.2	22	65	15	63	30	15	20	34	1.93
97922303--97922391	44	2.0	44	100	0	178	31	13	21	33	1.92
97922305--97922375	22	3.2	23	65	15	67	32	12	21	33	1.91
97922584--97922677	39	2.4	38	82	5	109	14	9	39	36	1.79
97939084--97939141	28	2.0	28	87	9	82	15	37	22	24	1.93
97944299--97944474	37	4.8	37	96	0	298	39	13	21	26	1.90
97944437--97944560	46	2.8	46	91	3	200	33	16	22	27	1.96
97951997--97952172	37	4.8	37	96	0	298	39	13	21	26	1.90
97952135--97952258	46	2.8	46	91	3	200	33	16	22	27	1.96
97958343--97958477	50	2.7	50	90	0	216	20	28	22	28	1.99
97958446--97958616	46	3.7	47	83	10	196	24	32	18	24	1.97
97958456--97958669	93	2.3	92	81	7	240	25	30	17	26	1.97
97958774--97959159	192	2.0	192	95	0	700	32	15	13	38	1.85
97959793--97960074	141	2.0	141	100	0	564	28	21	12	38	1.89
97962217--97962338	58	2.1	59	96	1	228	28	20	12	38	1.89
97975629--97975738	26	4.2	26	97	0	184	33	5	24	36	1.79
97986392--97986419	14	2.0	14	100	0	56	35	14	14	35	1.86
97989422--97989772	175	2.0	175	94	0	621	32	19	8	39	1.82
97990145--97990348	61	3.4	61	85	3	256	32	20	14	32	1.93
97991740--97991790	23	2.2	23	100	0	102	39	15	23	21	1.92
98001665--98001716	21	2.5	21	93	0	86	42	9	23	25	1.84
98008418--98008447	9	3.4	9	95	4	53	50	13	10	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98011508--98011568	20	3.0	20	65	9	52	21	21	16	40	1.91
98013386--98013415	13	2.3	13	100	0	60	40	46	6	6	1.56
98022775--98022875	39	2.6	39	87	0	139	38	22	24	13	1.91
98024954--98025503	275	2.0	275	98	0	1064	35	12	22	30	1.91
98028131--98028189	30	2.0	30	86	0	82	32	15	25	27	1.95
98028529--98028839	94	3.3	90	82	8	290	29	20	27	21	1.98
98028524--98028839	140	2.2	140	89	6	478	29	20	28	21	1.98
98033702--98034219	259	2.0	259	100	0	1036	37	8	19	35	1.82
98034486--98034708	47	4.8	46	79	5	220	28	18	29	23	1.98
98034485--98034653	46	3.6	46	80	6	144	28	18	29	23	1.98
98034484--98034708	93	2.4	93	80	5	258	28	18	29	24	1.98
98040575--98040669	38	2.5	39	87	1	138	49	0	3	47	1.17
98041038--98041071	15	2.3	15	89	0	50	17	41	5	35	1.74
98041604--98041645	14	2.8	15	82	10	50	45	0	0	54	0.99
98041606--98041668	29	2.1	30	91	2	101	44	0	1	53	1.10
98044734--98044799	33	2.0	33	100	0	132	12	21	18	48	1.80
98046296--98046536	43	5.6	43	74	2	196	20	15	23	40	1.91
98047147--98047171	13	1.9	13	100	0	50	52	16	16	16	1.76
98047654--98047812	84	1.9	84	84	0	210	18	34	25	22	1.96
98050977--98051046	2	35.0	2	100	0	140	0	0	50	50	1.00
98051507--98051564	29	2.0	29	89	0	89	27	29	27	15	1.96
98055716--98056000	95	3.0	95	96	0	525	36	11	17	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98065033--98065074	21	2.0	21	85	4	57	4	26	0	69	1.08
98069975--98070022	25	1.9	25	91	0	78	31	22	16	29	1.96
98085853--98085896	21	2.1	21	95	0	79	54	20	0	25	1.45
98089398--98089561	74	2.2	74	81	2	195	51	15	6	26	1.68
98089740--98089811	33	2.2	33	89	0	108	30	12	38	18	1.87
98091832--98092159	103	3.3	102	83	12	421	53	13	0	32	1.43
98091870--98092246	92	4.1	90	83	12	457	52	13	0	33	1.43
98091897--98092048	47	3.4	43	68	15	119	51	9	0	38	1.35
98092155--98092388	95	2.5	93	84	5	296	55	14	0	29	1.43
98091833--98092295	195	2.4	190	88	5	670	53	13	0	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297