genome.fa.s25.2.7.7.80.10.50.1000.219.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  219  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74418557--74418628	37	1.9	37	94	5	128	34	11	9	44	1.73
74420759--74420929	93	1.8	93	94	0	306	28	28	21	21	1.99
74420754--74420926	46	3.7	46	80	10	217	28	27	21	21	1.99
74423939--74423989	25	2.0	25	81	7	59	27	31	7	33	1.85
74424169--74424557	40	9.7	40	88	0	562	26	26	21	25	1.99
74426012--74426341	47	7.0	47	95	0	561	30	30	8	31	1.87
74428584--74428620	18	2.1	19	90	10	60	29	8	27	35	1.85
74432615--74432701	44	2.0	44	84	4	113	28	10	26	34	1.89
74435518--74435785	48	5.6	48	82	5	278	24	27	19	29	1.98
74435518--74435785	94	2.8	93	81	7	274	24	27	19	29	1.98
74435518--74435782	142	1.9	143	83	2	354	24	27	18	29	1.98
74435562--74435794	94	2.5	95	83	5	287	25	27	18	28	1.98
74439812--74439880	30	2.3	30	87	0	93	21	21	33	23	1.97
74442254--74442290	18	2.1	19	90	10	60	29	10	27	32	1.90
74450336--74450488	43	3.6	43	90	0	227	22	30	20	26	1.98
74460247--74460291	20	2.3	20	88	3	65	28	15	26	28	1.96
74460312--74460456	61	2.4	61	82	8	161	25	18	26	28	1.98
74462569--74462608	17	2.4	18	80	16	50	32	0	10	57	1.32
74468993--74469121	37	3.5	37	81	5	120	16	13	28	41	1.85
74481899--74481937	19	2.1	19	95	0	69	35	5	33	25	1.78
74487443--74487649	109	1.9	109	86	4	292	29	15	21	33	1.94
74492550--74492629	18	4.7	16	73	13	61	61	1	5	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74492600--74492739	50	2.9	48	79	13	135	64	0	5	30	1.20
74494697--74494842	75	1.9	75	98	0	283	26	4	22	45	1.72
74497899--74498053	42	3.7	42	81	3	168	30	16	23	29	1.96
74497890--74498053	85	1.9	84	82	3	204	31	15	22	29	1.95
74499505--74499648	40	3.6	40	91	2	229	27	25	23	23	2.00
74508170--74508630	231	2.0	231	97	0	877	36	19	15	29	1.93
74508797--74509115	47	6.8	47	100	0	638	27	30	19	22	1.98
74514101--74514142	21	2.0	21	95	0	75	26	30	23	19	1.98
74516284--74516577	155	1.9	155	100	0	588	31	26	19	22	1.98
74517938--74517967	15	1.9	16	93	6	53	33	0	26	40	1.57
74522190--74522219	12	2.5	12	88	0	51	26	43	20	10	1.83
74527279--74527387	43	2.5	43	88	4	148	30	21	24	23	1.99
74527313--74527454	42	3.3	41	76	15	112	29	28	19	22	1.98
74527377--74527458	42	2.0	42	87	4	121	26	32	17	23	1.96
74529218--74529260	19	2.3	19	88	8	61	55	6	0	37	1.27
74531922--74531952	16	1.9	16	100	0	62	25	0	6	67	1.14
74532011--74532073	7	8.7	7	89	6	99	25	0	0	74	0.82
74532011--74532073	15	4.4	14	90	6	99	25	0	0	74	0.82
74532017--74532099	29	2.6	32	81	18	102	27	1	1	69	1.03
74532528--74532590	30	2.1	31	81	3	74	38	4	9	47	1.57
74532650--74532798	49	3.0	49	98	0	280	48	4	8	38	1.55
74533393--74533487	40	2.4	40	85	3	129	29	23	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74533498--74533604	40	2.6	40	76	7	108	21	24	18	35	1.96
74533518--74533621	41	2.6	41	80	6	104	23	25	18	32	1.97
74533376--74533633	132	1.9	132	81	3	304	22	23	18	34	1.96
74534597--74534860	45	5.9	45	94	0	429	39	15	19	25	1.91
74551186--74551219	15	2.5	13	90	9	50	55	0	0	44	0.99
74553672--74553722	19	2.9	17	80	11	57	37	7	17	37	1.79
74553694--74553751	22	2.7	21	84	7	71	34	1	18	44	1.60
74558793--74558843	19	2.9	17	83	11	66	37	9	17	35	1.83
74558815--74558872	22	2.7	21	86	7	80	34	3	18	43	1.68
74559965--74560847	80	11.0	80	99	0	1723	42	12	21	23	1.87
74560997--74561050	27	2.0	27	85	0	72	38	7	14	38	1.75
74561297--74561542	49	5.0	49	78	6	253	26	17	25	30	1.97
74561299--74561528	100	2.3	98	84	5	275	26	17	25	30	1.97
74564082--74564158	38	2.0	38	97	0	145	25	9	16	48	1.76
74566751--74566909	80	2.0	80	91	0	255	44	11	18	24	1.84
74567061--74567114	27	2.0	27	85	0	72	38	7	14	38	1.75
74567360--74567590	49	4.7	49	80	4	275	25	16	26	30	1.97
74567362--74567604	100	2.5	99	82	4	303	26	17	25	30	1.97
74570130--74570178	25	2.0	25	84	8	64	22	26	2	48	1.61
74570885--74570979	37	2.6	36	88	1	127	52	9	8	29	1.63
74572200--74572228	15	2.0	15	93	6	51	68	0	0	31	0.89
74573155--74573215	29	2.1	29	81	6	70	22	1	13	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74579774--74580205	217	2.0	217	99	0	846	30	34	12	22	1.91
74583633--74583661	5	5.8	5	100	0	58	41	0	0	58	0.98
74585735--74585816	25	3.3	24	80	13	103	23	23	21	31	1.98
74586842--74586899	29	2.0	29	96	0	107	25	10	34	29	1.89
74591685--74591845	22	7.3	22	77	8	130	21	21	21	34	1.97
74591674--74591867	44	4.5	44	75	8	184	21	23	21	34	1.97
74591673--74591842	88	1.9	88	85	7	238	22	20	21	34	1.97
74591674--74591845	66	2.6	66	75	7	170	22	21	20	34	1.96
74603585--74603682	52	1.9	51	95	2	178	29	29	13	27	1.94
74604187--74604227	21	1.9	22	85	14	59	36	21	0	41	1.54
74604856--74604997	49	2.9	47	81	8	160	23	22	25	28	2.00
74607612--74607879	47	5.8	45	75	12	175	28	18	29	23	1.98
74607609--74607881	46	5.9	45	76	10	201	28	18	29	23	1.98
74608961--74608999	21	1.9	21	89	5	62	12	38	28	20	1.89
74611342--74611375	16	2.0	16	88	11	50	38	0	2	58	1.13
74612855--74613115	138	1.9	138	84	3	346	28	10	7	53	1.62
74619399--74619432	17	2.0	17	88	0	50	35	0	0	64	0.94
74619501--74619584	38	2.1	41	82	10	104	52	5	4	36	1.47
74622847--74622889	22	2.0	21	90	0	59	18	39	0	39	1.51
74624443--74624484	22	1.9	22	90	0	66	61	9	9	19	1.53
74626642--74626669	6	4.7	6	100	0	56	28	0	35	35	1.58
74627006--74627047	20	2.2	19	87	12	59	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74626990--74627044	18	3.0	18	77	15	58	47	1	0	50	1.11
74633155--74633191	19	1.9	19	100	0	74	18	16	16	48	1.81
74635806--74635877	25	2.9	25	89	0	99	33	20	29	16	1.95
74638414--74638512	38	2.6	37	79	4	108	37	3	10	49	1.52
74640419--74640600	93	2.0	93	91	0	292	29	20	21	29	1.98
74643268--74643308	20	2.0	20	90	0	64	43	17	26	12	1.84
74648656--74648838	79	2.3	81	84	7	232	24	22	27	25	2.00
74648657--74648840	40	4.6	40	83	9	216	23	22	28	25	2.00
74648709--74648873	79	2.1	79	84	6	210	25	21	27	25	1.99
74659850--74659969	50	2.3	52	85	2	163	39	12	15	33	1.84
74659989--74660064	39	1.9	39	89	0	116	47	11	7	32	1.69
74665459--74665594	47	3.0	43	77	14	132	29	27	19	22	1.98
74666004--74666063	30	2.0	30	86	0	84	33	25	5	36	1.78
74670517--74670569	27	2.0	27	88	0	79	32	16	16	33	1.92
74670779--74670823	22	2.0	22	83	8	56	24	4	46	24	1.71
74672239--74672370	42	3.1	42	74	6	131	23	14	25	37	1.92
74672251--74672370	43	2.8	41	71	12	107	24	15	25	35	1.94
74676614--74676653	18	2.2	18	95	0	71	60	0	7	32	1.25
74676771--74676806	18	2.0	18	94	0	63	44	13	11	30	1.79
74677090--74677226	47	2.9	47	94	0	238	35	15	11	37	1.84
74677658--74677719	20	3.1	19	78	15	63	62	1	20	14	1.39
74683170--74683251	42	2.0	42	82	4	103	26	26	30	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74684148--74684201	25	2.2	25	82	0	63	5	22	18	53	1.65
74684211--74684261	20	2.5	20	78	9	59	3	21	15	58	1.53
74684169--74684243	30	2.5	29	75	12	71	5	22	18	53	1.65
74685681--74685745	32	2.0	32	96	0	121	46	16	3	33	1.63
74688458--74688484	13	2.1	13	100	0	54	14	44	7	33	1.73
74699480--74699528	25	2.0	25	92	8	82	46	8	20	24	1.77
74702591--74702650	27	2.3	26	85	2	75	35	20	23	21	1.96
74702618--74702759	67	2.1	70	85	5	191	30	22	27	19	1.98
74704372--74704541	46	3.7	45	77	10	182	22	21	27	28	1.99
74704369--74704539	93	1.8	93	92	0	288	22	21	28	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297