genome.fa.s25.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  91  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32779899--32780904	85	11.8	85	81	5	1086	18	33	30	17	1.94
32780494--32780989	43	11.6	42	76	12	227	17	31	31	19	1.95
32779944--32781055	85	13.0	85	79	6	622	17	32	31	17	1.94
32786630--32786889	129	2.0	129	98	0	502	30	11	21	36	1.89
32794042--32794146	47	2.2	47	93	3	176	35	6	30	27	1.83
32801370--32801417	25	1.9	25	86	0	69	31	22	16	29	1.96
32801453--32801499	20	2.3	20	92	7	78	36	10	19	34	1.86
32801549--32801696	26	5.8	26	89	1	212	27	22	22	27	2.00
32803779--32804015	101	2.4	99	85	4	298	27	13	25	33	1.94
32808949--32809018	21	3.2	21	62	18	52	35	25	15	22	1.94
32816375--32816399	13	1.9	13	100	0	50	24	12	8	56	1.62
32817289--32817379	45	2.0	45	89	0	137	38	24	13	24	1.91
32817308--32817383	21	3.5	21	65	16	55	40	26	11	21	1.87
32819183--32819273	45	2.0	45	89	0	137	38	24	12	25	1.90
32828775--32828879	43	2.4	43	93	0	183	30	14	21	33	1.93
32830804--32830854	18	2.9	17	74	25	61	31	0	29	39	1.57
32830983--32831159	41	4.4	41	87	4	225	27	21	18	32	1.96
32831526--32831594	7	9.3	7	74	16	50	46	33	1	18	1.58
32831525--32831571	22	2.1	22	84	7	60	44	34	0	21	1.52
32832182--32832428	41	6.2	41	78	5	218	23	18	21	37	1.94
32832191--32832427	118	2.0	118	81	2	280	23	17	21	37	1.94
32833760--32833912	42	3.6	43	73	15	138	32	26	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836472--32836560	25	3.6	25	69	11	74	40	19	22	17	1.91
32838771--32838964	65	3.0	65	100	0	388	49	3	15	31	1.60
32851405--32851443	21	1.9	21	89	5	62	69	0	12	17	1.19
32852064--32852102	6	6.2	6	82	11	51	76	5	0	17	0.96
32852124--32852209	9	9.6	9	87	7	95	27	8	19	44	1.79
32864424--32864482	30	2.0	29	86	3	82	32	25	6	35	1.82
32866720--32867087	27	13.7	27	79	5	127	34	20	9	35	1.85
32866760--32866934	81	2.2	81	78	6	183	29	23	9	37	1.86
32866820--32866998	27	6.6	27	87	1	225	28	20	8	41	1.82
32867192--32867269	27	2.9	27	77	11	88	35	21	20	21	1.96
32868261--32868352	42	2.2	42	92	0	148	29	14	21	34	1.93
32868376--32868454	31	2.5	31	91	0	131	30	17	25	26	1.97
32871941--32871980	16	2.6	16	92	4	64	67	2	10	20	1.31
32880825--32881069	48	5.1	48	83	2	276	26	17	29	26	1.97
32880837--32881103	48	5.6	47	83	2	264	27	17	28	26	1.98
32880837--32881085	96	2.6	96	82	3	304	27	17	28	26	1.97
32884197--32884249	27	2.0	27	85	3	72	28	11	20	39	1.87
32893846--32893895	25	2.0	25	100	0	100	32	8	24	36	1.84
32902559--32902743	41	4.5	41	80	2	210	22	28	14	34	1.94
32903210--32903250	13	3.4	13	80	19	61	34	0	14	51	1.43
32905685--32905854	67	2.6	63	74	8	162	30	16	29	23	1.96
32908888--32908957	27	2.6	27	95	2	113	31	28	12	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32908888--32908982	28	3.4	28	89	2	129	32	28	12	26	1.93
32917726--32918123	27	14.7	27	75	6	180	36	20	9	33	1.85
32918924--32919009	20	4.3	20	92	2	138	40	10	18	30	1.84
32919060--32919195	26	5.3	26	89	3	199	27	21	22	27	1.99
32919328--32919419	42	2.2	42	92	0	148	31	14	19	34	1.91
32919443--32919550	31	3.5	31	83	5	132	29	19	25	25	1.98
32921502--32921649	48	3.1	47	88	3	215	30	22	8	38	1.83
32923099--32923142	23	1.9	23	85	0	61	45	11	6	36	1.67
32923259--32923284	12	2.2	12	100	0	52	42	7	15	34	1.75
32924061--32924177	40	3.0	40	92	1	173	27	29	23	20	1.99
32926997--32927295	40	7.2	40	76	16	121	26	19	27	26	1.99
32926983--32927248	131	2.0	131	98	0	514	25	19	27	26	1.99
32927110--32927377	40	6.7	40	86	3	308	24	19	28	27	1.99
32929399--32929546	48	3.1	48	92	0	242	29	24	8	37	1.84
32933225--32933322	42	2.3	43	83	1	126	27	16	21	34	1.95
32933165--32933335	43	4.0	43	71	14	136	25	16	25	33	1.96
32935014--32935181	43	4.0	43	74	9	148	25	16	28	30	1.96
32935615--32935652	14	2.7	14	91	0	58	39	5	15	39	1.70
32941044--32941092	6	8.2	6	86	0	71	34	0	65	0	0.93
32942968--32943035	34	2.0	33	86	11	93	32	16	22	29	1.95
32944814--32944878	28	2.3	28	86	5	87	32	29	6	32	1.82
32944984--32945046	28	2.2	29	88	8	94	22	22	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32944994--32945057	28	2.2	28	86	2	83	25	25	18	31	1.98
32945430--32945468	19	2.1	19	85	0	51	15	5	7	71	1.26
32952015--32952062	25	1.9	25	86	0	69	33	25	16	25	1.96
32952099--32952165	20	3.3	20	89	0	107	34	11	22	31	1.90
32952216--32952310	23	4.1	23	93	5	165	28	20	21	30	1.98
32952525--32952588	31	2.1	31	87	0	92	39	14	21	25	1.91
32955743--32955830	27	3.3	27	85	1	106	34	17	22	26	1.96
32973495--32973598	27	3.9	27	83	2	129	30	16	22	30	1.95
32973721--32973791	27	2.7	26	74	8	63	15	19	19	45	1.86
32973930--32974016	33	2.6	33	87	0	111	26	22	20	29	1.99
32976115--32976210	48	2.0	48	95	0	174	46	10	14	28	1.77
32977175--32977218	21	2.1	21	95	0	79	31	0	29	38	1.58
32977179--32977228	21	2.4	21	86	6	66	32	0	30	38	1.58
32980503--32980578	37	2.1	37	94	0	134	30	21	9	39	1.84
32982306--32982489	40	4.7	40	78	11	168	26	22	26	24	2.00
32982358--32982522	79	2.1	79	81	8	185	27	21	26	24	1.99
32985498--32985619	49	2.6	47	82	5	138	27	30	16	25	1.97
32985494--32985766	47	5.7	47	75	12	220	24	29	18	26	1.98
32986235--32986363	65	2.0	65	96	0	240	42	15	5	36	1.70
32988751--32988956	27	7.6	27	90	2	270	24	21	17	35	1.95
32995318--32996082	99	7.8	99	98	0	1448	27	29	16	26	1.97
32996638--32996784	73	2.0	73	98	0	285	38	14	6	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33004437--33004522	44	2.0	43	83	2	109	37	16	19	26	1.93
33005321--33005352	14	2.1	16	88	11	50	75	0	6	18	1.01
33033037--33033214	27	6.6	27	84	3	205	29	28	15	26	1.96
33033058--33033213	82	1.9	81	88	3	233	29	28	15	26	1.96
33035845--33035984	43	3.3	43	84	5	153	22	26	20	30	1.98
33035879--33035991	43	2.7	43	90	1	165	22	27	22	28	1.99
33038283--33038360	20	3.8	20	73	9	59	50	20	15	14	1.78
33041298--33041367	23	3.0	23	87	0	95	32	4	24	38	1.75
33046350--33046603	46	5.5	46	77	11	204	27	17	31	24	1.97
33056339--33056396	30	1.9	30	89	0	89	32	12	25	29	1.92
33058270--33058442	93	1.9	93	91	0	283	28	30	20	21	1.98
33058263--33058438	46	3.8	46	78	10	178	29	29	19	21	1.98
33058314--33058457	46	3.1	46	72	14	134	29	29	19	21	1.98
33060601--33060751	44	3.5	43	76	11	148	27	24	19	28	1.98
33067818--33067979	43	3.8	42	78	11	157	29	25	17	27	1.98
33067818--33067976	44	3.7	43	77	12	157	29	25	17	27	1.98
33069273--33069403	46	2.8	46	79	10	124	28	22	29	20	1.98
33071336--33071539	75	2.7	76	84	4	261	43	8	3	43	1.54
33072382--33072451	32	2.3	32	78	9	85	7	20	5	67	1.36
33074258--33074332	37	2.0	37	87	5	107	26	30	18	24	1.98
33074452--33074755	47	6.4	47	92	0	473	27	30	8	32	1.87
33074721--33074788	33	2.1	33	100	0	136	26	27	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33074626--33074882	128	2.0	127	98	0	496	28	29	9	31	1.88
33074754--33074882	47	2.7	47	95	0	240	28	29	9	32	1.88
33074673--33074835	80	2.0	81	93	1	283	28	29	9	32	1.89
33078440--33078691	40	6.3	40	88	4	348	28	26	19	24	1.99
33078429--33078691	80	3.3	80	92	1	411	27	26	20	25	1.99
33079362--33079625	40	6.7	40	89	5	360	25	21	27	25	1.99
33079362--33079658	119	2.5	118	81	9	338	26	21	27	25	1.99
33083479--33083519	19	2.2	19	100	0	82	29	9	36	24	1.87
33086926--33087042	58	2.0	58	96	0	216	22	13	23	40	1.90
33087117--33088081	39	24.6	39	96	1	1699	25	23	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297