genome.fa.s25.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  103  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37030377--37030430	23	2.5	22	87	6	74	59	7	1	31	1.36
37030380--37030448	3	22.3	3	76	5	66	62	5	1	30	1.27
37030913--37030950	11	3.2	12	88	11	60	47	0	52	0	1.00
37031818--37031842	7	3.6	7	100	0	50	64	0	0	36	0.94
37031825--37031882	22	2.6	22	77	0	71	62	5	0	32	1.18
37031816--37031871	29	1.9	29	85	0	76	67	5	0	26	1.11
37031818--37031871	14	3.8	14	75	4	54	66	5	0	27	1.13
37034482--37034518	8	4.5	8	89	3	56	40	2	2	54	1.29
37036475--37036504	15	1.9	16	93	6	53	53	3	6	36	1.44
37054402--37054469	34	2.0	34	97	0	127	51	17	2	27	1.60
37054499--37054557	21	2.8	21	78	2	55	42	38	1	16	1.59
37054491--37054531	14	2.9	15	85	7	59	34	43	2	19	1.64
37054523--37054630	22	5.0	21	69	16	69	45	29	0	24	1.59
37054591--37054635	14	3.2	14	80	0	54	48	26	0	24	1.51
37054729--37054776	7	6.7	7	83	4	51	39	35	2	22	1.66
37054782--37054829	21	2.2	21	88	7	69	43	37	0	18	1.51
37054807--37054854	25	1.9	25	87	8	71	39	41	0	18	1.51
37054835--37054869	15	2.4	15	90	4	54	45	34	0	20	1.51
37054837--37054920	22	3.9	21	73	6	69	46	29	1	22	1.60
37054943--37055038	44	2.2	44	90	0	147	42	9	2	45	1.48
37057702--37057860	47	3.4	47	91	0	246	32	7	30	28	1.85
37058683--37058782	50	2.0	50	98	0	191	20	17	24	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37060035--37060245	115	1.8	112	83	8	271	30	4	12	52	1.59
37071520--37071627	53	2.0	53	94	3	191	37	12	12	38	1.80
37071734--37072871	90	12.7	90	92	1	1723	30	14	27	27	1.95
37074015--37074044	13	2.2	14	94	5	53	40	0	3	56	1.16
37076781--37076963	79	2.3	81	82	7	214	25	27	22	24	2.00
37076760--37076963	40	5.1	40	81	8	220	25	27	22	25	2.00
37079578--37079708	67	2.0	67	86	8	187	34	16	23	25	1.95
37082310--37083220	40	22.8	40	97	0	1635	22	22	27	27	1.99
37084933--37084987	24	2.3	25	75	9	60	32	0	3	63	1.12
37093566--37093590	7	3.6	7	100	0	50	44	0	28	28	1.55
37096585--37096634	26	1.9	26	95	0	91	32	8	18	42	1.79
37103614--37103786	46	3.7	46	80	13	219	21	21	28	28	1.98
37103611--37103781	93	1.8	93	96	0	315	21	21	29	28	1.98
37111198--37111372	46	3.8	46	96	0	314	20	21	29	29	1.98
37113314--37113490	49	3.7	47	76	11	162	24	16	32	25	1.96
37113130--37113493	140	2.6	138	80	8	376	26	17	30	25	1.97
37118514--37118561	15	3.2	15	77	11	53	54	4	0	41	1.20
37123969--37124019	22	2.4	21	72	18	52	64	0	0	35	0.94
37129172--37129251	37	2.2	37	97	0	151	40	6	12	41	1.68
37133908--37134138	40	5.8	40	88	1	304	22	27	24	25	2.00
37139123--37139199	25	3.1	25	98	0	145	28	20	24	25	1.99
37143014--37143178	56	2.9	56	90	1	242	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37143463--37143494	15	2.1	15	100	0	64	37	0	21	40	1.54
37146338--37146369	16	1.9	17	93	6	57	43	15	9	31	1.78
37148937--37149006	23	3.2	23	61	19	58	27	11	28	32	1.91
37148937--37149018	43	1.9	43	100	0	164	28	12	28	31	1.92
37150093--37150137	17	2.6	17	89	0	72	11	28	31	28	1.91
37150723--37150761	13	3.0	12	82	17	51	20	17	15	46	1.84
37153626--37153751	58	2.2	60	81	4	150	19	19	23	37	1.94
37163420--37163738	48	6.7	46	80	6	271	29	19	27	23	1.98
37163417--37163689	96	2.8	96	85	3	354	28	19	28	23	1.98
37163407--37163722	144	2.2	144	85	2	411	28	18	28	24	1.98
37163420--37163722	96	3.2	96	82	5	344	29	19	28	23	1.98
37165311--37165406	6	15.8	6	76	14	90	46	15	18	18	1.84
37165320--37165418	31	3.2	31	91	1	146	46	16	19	18	1.84
37165566--37165667	27	3.8	26	83	5	105	38	20	21	19	1.94
37165826--37165887	22	2.8	23	82	7	74	33	22	22	20	1.97
37166317--37166484	27	6.3	27	81	8	157	25	19	20	34	1.96
37166534--37166760	27	8.4	27	81	5	91	34	7	17	40	1.79
37166577--37167646	27	39.6	27	94	0	1852	31	9	20	38	1.85
37169586--37169682	6	15.8	6	74	16	83	46	15	18	19	1.84
37169595--37169705	31	3.5	31	92	1	159	46	15	18	19	1.84
37169842--37169916	27	2.8	27	87	0	96	37	20	24	18	1.94
37170565--37170731	27	6.2	27	77	10	137	26	20	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37170582--37170731	54	2.8	55	79	8	157	25	19	20	35	1.95
37170713--37170785	27	2.7	26	72	8	74	31	9	24	34	1.88
37170767--37171186	27	15.6	26	82	4	392	32	8	20	38	1.83
37170770--37171186	81	5.2	81	86	2	471	32	8	20	39	1.83
37170824--37171186	27	13.5	27	85	0	440	32	8	19	39	1.81
37174316--37174389	37	2.0	37	82	15	91	25	8	24	41	1.82
37181518--37181668	76	2.0	78	82	2	189	21	20	23	33	1.97
37181518--37181668	38	3.9	38	84	1	167	21	20	23	33	1.97
37183242--37183451	43	4.9	43	89	0	312	12	23	32	31	1.92
37187858--37188046	38	4.9	38	87	6	229	21	22	26	29	1.99
37192718--37192775	28	2.0	28	87	9	82	18	20	43	17	1.89
37199911--37199956	22	2.0	23	87	4	67	39	19	4	36	1.72
37202191--37202731	267	2.0	268	94	0	958	43	25	4	26	1.73
37202781--37203063	142	2.0	142	95	0	503	37	16	16	29	1.91
37203256--37203310	28	2.0	28	88	0	83	29	27	14	29	1.95
37207844--37207923	34	2.4	34	91	0	124	26	27	25	21	1.99
37214888--37215009	61	2.0	61	100	0	244	31	19	21	27	1.97
37215135--37215396	39	6.6	39	87	6	320	24	27	22	25	2.00
37215135--37215393	118	2.2	119	83	10	327	24	27	21	25	1.99
37216404--37216807	204	2.0	201	98	1	781	25	19	16	38	1.92
37223876--37224144	46	5.8	45	72	11	213	21	19	29	29	1.97
37223928--37224090	47	3.5	47	73	11	181	20	19	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37223872--37224136	93	2.8	93	91	0	422	21	19	30	29	1.97
37226469--37226496	13	2.2	13	100	0	56	57	0	21	21	1.41
37230060--37230244	40	4.7	40	83	6	216	25	28	22	23	2.00
37230060--37230244	79	2.3	80	80	8	198	25	28	22	23	2.00
37232882--37233147	46	5.7	46	72	16	226	23	18	28	30	1.98
37232875--37233139	93	2.8	93	90	1	424	23	19	28	29	1.98
37232931--37233093	47	3.5	47	72	11	172	23	18	28	30	1.98
37236086--37236139	28	1.9	28	96	0	99	35	29	9	25	1.87
37244972--37245050	28	2.8	28	90	0	113	29	24	11	35	1.90
37248725--37248868	39	3.7	39	94	0	252	27	28	22	21	1.99
37262037--37262098	27	2.3	27	91	0	97	40	17	14	27	1.89
37266032--37266243	46	4.6	45	77	11	173	27	18	29	23	1.98
37266075--37266297	92	2.4	94	79	13	237	28	18	29	23	1.98
37269714--37269749	18	1.9	19	94	5	65	55	2	0	41	1.14
37270264--37270296	17	1.9	17	88	11	50	57	9	0	33	1.30
37272303--37273371	27	39.9	27	79	14	1103	26	22	10	40	1.86
37272301--37273372	54	20.0	53	90	3	1286	26	22	10	40	1.86
37273389--37273574	81	2.3	81	87	1	257	36	17	19	26	1.94
37273381--37273576	27	7.3	27	86	0	230	35	17	19	27	1.94
37274452--37274504	27	2.0	27	96	0	97	26	20	20	32	1.98
37274451--37274511	27	2.3	27	88	0	95	29	18	19	32	1.95
37274516--37275062	27	20.3	27	83	5	633	40	9	22	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37284512--37284619	54	2.0	55	96	1	200	45	14	19	20	1.85
37284952--37285137	40	4.7	40	84	5	209	26	26	21	25	2.00
37297024--37297097	29	2.6	29	86	4	96	27	16	31	25	1.96
37299537--37299597	21	3.0	21	92	2	88	21	27	36	14	1.93
37326521--37326599	29	2.7	29	84	5	97	29	32	15	22	1.95
37330672--37330851	27	6.6	28	79	12	135	38	20	10	31	1.86
37330662--37330851	81	2.3	81	82	6	233	37	21	10	31	1.86
37330662--37330851	54	3.5	53	79	9	204	37	21	10	31	1.86
37331221--37331280	22	2.7	22	78	0	66	21	25	21	31	1.98
37336404--37336491	43	2.0	43	86	0	122	37	11	17	34	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297