Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  127  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44295921--44296003
17
4.6
17
71
14
67
61
1
2
34
1.17
44295942--44296000
10
6.0
10
77
15
61
67
1
3
27
1.16
44295914--44296003
27
3.3
27
74
10
83
61
1
2
35
1.16
44295914--44296020
27
3.9
26
73
12
81
62
0
2
33
1.16
44295960--44296020
9
6.9
9
72
10
54
68
1
3
26
1.14
44296259--44296298
19
2.0
20
86
13
57
32
2
5
60
1.32
44296293--44296337
18
2.4
21
75
24
55
44
6
0
48
1.29
44296348--44296404
19
3.0
19
87
12
82
38
1
0
59
1.08
44300551--44300597
21
2.2
22
92
3
78
21
38
19
21
1.94
44303837--44304290
251
1.8
249
84
5
630
44
11
9
34
1.74
44304726--44304752
4
6.8
4
100
0
54
74
0
0
25
0.83
44304967--44305095
60
2.1
61
94
2
224
41
10
6
41
1.63
44321482--44321727
61
4.0
61
93
1
370
39
12
6
41
1.69
44321847--44321880
16
2.1
16
88
5
50
20
67
0
8
1.16
44321847--44321880
17
2.1
16
88
5
50
20
67
0
8
1.16
44326231--44326275
19
2.4
19
92
0
72
37
2
11
48
1.51
44328233--44328331
49
2.0
49
94
0
171
28
20
5
46
1.71
44328534--44328984
225
2.0
225
100
0
902
43
6
19
31
1.76
44338155--44338406
3
84.3
3
64
18
55
30
9
1
59
1.36
44338151--44338218
34
2.1
32
83
8
84
27
2
0
69
1.03
44338156--44338239
27
3.2
26
78
6
80
23
5
0
70
1.09
44338155--44338225
12
6.1
12
79
12
85
26
2
0
70
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44338166--44338239
33
2.2
33
83
7
87
24
6
0
68
1.13
44338368--44338431
23
2.8
22
77
13
67
34
6
4
54
1.46
44338478--44338552
22
3.5
21
80
9
80
30
8
2
58
1.41
44338481--44338626
3
47.0
3
69
16
59
28
6
2
63
1.31
44339832--44339903
25
2.9
25
77
4
74
31
18
26
23
1.97
44339804--44339903
50
2.0
49
81
9
114
32
17
25
26
1.97
44339857--44339959
50
2.1
50
81
7
120
33
15
29
22
1.95
44342881--44342921
21
2.0
21
85
0
55
14
29
36
19
1.92
44343637--44343712
21
3.6
21
72
11
59
64
1
13
21
1.35
44343684--44343799
26
4.5
26
72
13
107
61
0
13
24
1.38
44343720--44343811
20
4.1
21
66
23
53
61
1
13
23
1.38
44343710--44343968
47
5.4
46
78
9
279
59
1
13
25
1.44
44343700--44343964
97
2.8
94
86
5
370
59
1
13
25
1.43
44344277--44344306
11
2.8
11
95
5
53
63
0
10
26
1.26
44344357--44344420
20
3.3
18
74
18
58
65
0
9
25
1.22
44344385--44344461
30
2.6
30
88
8
106
58
1
12
27
1.43
44344434--44344488
23
2.7
19
83
11
56
52
0
16
30
1.44
44344482--44344532
23
2.3
22
80
12
59
54
0
15
29
1.41
44344561--44344615
23
2.5
22
80
13
69
61
0
9
29
1.26
44344603--44344668
5
12.6
5
80
6
53
57
1
24
16
1.48
44344915--44344954
21
2.0
21
90
5
64
60
0
15
25
1.35
44344995--44345044
19
2.6
20
81
15
61
70
0
4
26
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44345045--44345110
5
11.6
5
80
17
60
57
0
16
25
1.39
44344991--44345254
81
3.2
80
73
17
220
62
0
12
23
1.35
44345045--44345103
17
3.6
17
73
19
63
55
0
16
27
1.41
44345047--44345110
23
2.7
23
88
11
94
56
0
17
26
1.41
44345045--44345110
12
5.8
10
77
22
60
57
0
16
25
1.39
44345074--44345142
23
3.0
23
79
12
63
55
0
15
28
1.41
44345138--44345179
18
2.3
18
91
0
66
69
4
11
14
1.34
44346827--44346909
40
2.1
40
86
2
114
32
14
1
51
1.50
44347700--44347730
14
2.2
14
94
0
53
38
9
19
32
1.84
44348141--44348239
27
3.6
27
70
20
96
13
14
21
51
1.75
44350311--44350368
26
2.2
26
96
0
107
34
12
10
43
1.76
44350690--44350766
14
5.0
15
71
20
52
42
15
9
32
1.78
44350706--44350745
20
2.0
20
90
0
62
50
12
10
27
1.72
44350694--44350760
34
1.9
35
90
3
109
46
13
8
31
1.74
44350729--44350768
14
2.9
14
84
0
53
42
17
7
32
1.77
44352203--44352291
9
9.6
9
69
21
51
66
1
2
30
1.11
44352221--44352279
9
6.8
8
79
12
55
67
1
3
27
1.16
44352221--44352279
17
3.4
17
72
19
50
67
1
3
27
1.16
44352236--44352299
19
3.3
18
77
12
65
64
1
1
32
1.13
44352202--44352299
10
10.4
10
75
14
77
64
1
2
32
1.12
44352611--44352810
92
2.2
91
83
7
244
33
9
19
38
1.83
44353426--44353459
17
2.0
17
94
0
59
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44359039--44359354
158
2.0
158
100
0
632
35
8
18
37
1.82
44362767--44362814
19
2.6
19
90
3
71
41
0
8
50
1.33
44363847--44364104
129
2.0
129
97
0
489
38
13
25
22
1.91
44367994--44368033
11
3.6
11
82
0
53
20
10
10
60
1.57
44368895--44369000
43
2.5
43
79
10
101
29
13
20
36
1.91
44371595--44371630
17
2.1
17
94
0
63
11
16
36
36
1.84
44373160--44373198
17
2.4
16
79
8
51
53
0
15
30
1.42
44375388--44375527
46
3.0
46
97
0
271
24
24
14
37
1.92
44375499--44375556
29
2.0
29
96
0
107
24
22
17
36
1.95
44375453--44375602
75
2.0
75
93
0
255
24
24
15
36
1.93
44375528--44375738
46
4.4
46
88
7
278
23
24
15
36
1.93
44375407--44375648
121
2.0
121
96
0
448
23
23
15
36
1.93
44383099--44383124
12
2.2
12
100
0
52
7
15
30
46
1.74
44383149--44383298
41
3.7
42
89
3
200
35
23
22
18
1.96
44383180--44383316
41
3.4
41
86
5
181
35
23
21
18
1.96
44383833--44383876
7
6.3
7
86
0
61
15
0
52
31
1.44
44385077--44385348
138
2.0
138
94
1
474
26
9
14
48
1.75
44386390--44386500
43
2.6
43
95
0
195
24
19
34
21
1.97
44386691--44386895
102
2.0
102
99
0
401
35
5
20
38
1.77
44390373--44390420
19
2.6
19
86
3
71
35
2
14
47
1.56
44399069--44399094
11
2.4
11
100
0
52
46
19
7
26
1.77
44398799--44399499
351
2.0
347
95
1
1028
32
18
11
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44401974--44402173
88
2.3
86
87
5
287
38
19
8
34
1.82
44402353--44402410
28
2.1
28
86
0
80
65
0
5
29
1.14
44402361--44402443
38
2.2
36
81
16
98
65
1
7
26
1.26
44402631--44402680
19
2.7
18
84
6
64
30
0
4
66
1.10
44402780--44403032
90
2.8
88
78
10
271
34
12
17
35
1.87
44404724--44404756
16
1.9
18
88
11
52
57
0
0
42
0.98
44404708--44404824
51
2.4
48
80
8
121
50
0
0
47
1.12
44404747--44404800
25
2.0
28
83
16
71
50
1
1
46
1.23
44404795--44404820
10
2.6
10
100
0
52
42
0
0
57
0.98
44416873--44416958
19
4.5
20
71
17
60
33
2
0
63
1.07
44420538--44420704
55
3.0
55
94
3
298
21
11
3
63
1.42
44422064--44422112
17
2.9
17
93
0
89
40
4
12
42
1.61
44423841--44423874
18
1.9
18
94
5
61
55
5
11
26
1.58
44424584--44424630
10
4.7
10
79
10
60
65
2
10
21
1.33
44424584--44424643
20
3.0
20
82
4
68
63
1
13
21
1.38
44425051--44425091
5
8.2
5
91
0
64
2
2
19
75
1.03
44425051--44425091
20
2.0
20
95
0
73
2
2
19
75
1.03
44425064--44425101
15
2.5
15
87
8
51
2
5
21
71
1.19
44425899--44425938
21
1.9
21
94
0
71
40
5
0
55
1.22
44425898--44425949
21
2.4
22
83
6
70
42
3
0
53
1.19
44426393--44426486
5
19.8
5
73
14
58
14
3
4
77
1.04
44426409--44426487
28
2.9
27
79
9
88
15
2
3
78
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44426398--44426486
14
6.3
13
75
19
65
15
3
4
76
1.08
44426443--44426486
9
4.9
9
86
8
63
18
0
2
79
0.83
44426565--44426611
12
3.8
12
78
15
51
42
0
0
57
0.98
44426546--44426592
19
2.4
19
89
10
69
38
2
0
59
1.09
44426562--44426599
7
5.7
7
81
12
53
44
0
0
55
0.99
44426562--44426611
26
1.9
26
92
8
84
44
0
0
56
0.99
44426585--44426657
19
3.7
19
71
10
58
47
1
2
47
1.24
44426561--44426618
26
2.2
26
84
6
82
43
3
1
51
1.28
44426615--44426715
21
4.8
21
81
11
100
60
0
0
38
1.04
44426647--44426693
12
4.1
12
91
8
80
65
0
0
34
0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297