Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  135  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46294596--46294719
66
1.9
66
91
0
203
27
24
16
31
1.97
46294898--46295126
71
3.2
72
83
6
286
34
18
15
31
1.93
46294893--46295110
75
3.0
72
85
4
287
31
19
16
32
1.94
46295039--46295290
85
2.9
86
79
9
266
40
20
12
26
1.88
46299191--46299284
48
2.0
48
83
8
120
20
11
26
41
1.86
46301351--46301394
15
2.9
15
96
3
79
34
11
6
47
1.66
46301475--46301553
39
2.0
39
95
0
140
45
5
22
26
1.73
46308438--46308477
19
2.1
19
100
0
80
50
10
10
30
1.69
46311093--46311477
192
2.0
192
96
0
707
25
29
17
27
1.98
46314794--46314944
28
5.4
28
92
1
223
33
28
11
25
1.92
46321032--46321227
40
4.9
40
82
7
254
25
28
22
23
1.99
46321040--46321223
80
2.3
80
91
1
289
25
28
23
22
1.99
46321842--46321934
38
2.4
38
96
0
168
33
27
12
25
1.93
46332723--46332763
21
2.0
21
85
0
55
82
2
4
9
0.89
46332721--46332762
14
2.9
14
77
19
50
83
2
4
9
0.88
46333661--46334172
202
2.5
203
90
3
758
31
18
22
27
1.97
46334557--46334595
20
1.9
21
89
5
62
38
38
10
12
1.78
46335734--46335785
26
2.1
25
85
7
70
46
5
0
48
1.26
46335798--46335844
14
3.4
14
77
11
51
29
6
0
63
1.19
46335823--46335898
11
6.5
11
70
19
55
30
2
2
64
1.21
46335830--46335898
25
2.8
24
85
10
79
28
2
2
65
1.22
46335914--46335970
28
2.0
29
86
3
80
31
7
3
57
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46343566--46343618
27
2.0
27
85
7
72
35
22
13
28
1.92
46346176--46346254
28
2.8
29
84
1
88
26
11
34
27
1.91
46346212--46346318
29
3.7
28
77
13
94
28
11
31
28
1.91
46348726--46348792
33
2.0
33
94
0
116
31
8
29
29
1.88
46349123--46349199
34
2.3
34
80
8
86
32
23
22
22
1.98
46365148--46365231
34
2.5
34
80
5
91
33
19
20
27
1.96
46379735--46379819
31
2.9
31
80
14
92
49
11
5
32
1.63
46379759--46379828
31
2.3
30
83
14
90
52
11
4
31
1.56
46383980--46384178
43
4.7
43
77
4
165
31
18
22
27
1.97
46384091--46385038
317
3.0
315
93
1
1591
33
14
21
30
1.93
46385963--46386012
20
2.5
20
93
0
82
20
34
34
12
1.89
46386329--46386362
17
2.0
17
94
0
59
58
11
8
20
1.59
46390153--46390336
79
2.3
81
82
11
222
25
27
22
25
2.00
46390153--46390336
40
4.6
41
83
12
199
25
27
22
25
2.00
46391431--46391478
20
2.4
21
80
16
57
58
16
2
22
1.49
46394999--46395268
40
6.8
40
87
5
354
25
27
21
25
1.99
46396346--46396372
14
1.9
14
100
0
54
0
7
3
88
0.61
46396917--46396964
20
2.4
21
80
16
57
58
16
2
22
1.49
46402448--46402531
42
2.0
41
93
2
141
25
23
14
35
1.92
46406685--46406745
30
2.0
30
87
0
86
37
29
9
22
1.87
46410576--46410745
40
4.3
40
87
2
191
25
21
27
25
2.00
46416879--46417027
40
3.7
40
90
0
226
31
20
26
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46416880--46417027
80
1.9
80
94
0
260
31
20
27
21
1.98
46421365--46421424
16
3.7
16
73
8
50
81
5
8
5
0.97
46421402--46421428
6
4.5
6
100
0
54
85
0
0
14
0.61
46424118--46424205
30
2.9
31
72
9
92
48
6
12
31
1.67
46437355--46437396
7
6.3
7
86
5
52
40
11
0
47
1.40
46437359--46437396
19
2.0
20
89
5
60
39
10
0
50
1.37
46437979--46438016
16
2.4
16
86
4
51
44
2
0
52
1.14
46438533--46438718
100
1.9
100
91
0
309
29
20
9
40
1.84
46455368--46456221
46
18.6
46
98
0
1665
28
23
28
19
1.99
46459818--46459875
27
2.1
27
80
0
62
32
22
13
31
1.93
46459836--46459934
27
3.7
27
81
0
117
30
20
16
33
1.94
46460966--46461067
43
2.3
43
79
1
105
30
16
18
34
1.93
46471043--46471088
20
2.3
20
81
3
58
28
19
26
26
1.99
46471081--46471215
60
2.2
60
84
8
168
27
18
25
28
1.98
46476790--46477087
40
7.5
40
85
6
392
23
22
27
26
1.99
46476789--46477054
120
2.2
120
100
0
532
22
22
27
26
1.99
46485199--46485375
40
4.5
39
85
4
221
24
22
27
25
2.00
46486758--46486811
25
2.2
25
96
3
101
35
31
3
29
1.75
46494305--46494347
18
2.4
18
85
11
54
18
23
39
18
1.92
46494798--46495052
126
2.0
126
89
0
393
24
18
17
39
1.92
46499202--46499288
32
2.8
31
89
5
140
26
26
14
32
1.95
46499482--46499601
25
4.9
24
85
8
143
24
23
25
27
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46499648--46499695
11
4.6
11
80
12
57
33
18
12
35
1.89
46499732--46499780
25
2.0
25
87
0
71
26
14
22
36
1.92
46504398--46504580
40
4.6
39
81
6
170
24
20
27
26
1.99
46504434--46504615
79
2.3
80
79
3
190
26
20
27
25
1.99
46510490--46510598
25
4.4
24
86
7
139
26
23
22
27
1.99
46510644--46510686
19
2.2
20
87
4
61
34
18
11
34
1.87
46517925--46518132
46
4.5
45
76
7
177
28
19
28
23
1.98
46518154--46518282
49
2.6
50
85
3
172
24
17
31
27
1.97
46522720--46522757
8
4.8
8
83
9
51
57
0
2
39
1.12
46522719--46522765
24
2.0
24
83
8
60
59
0
4
36
1.17
46522757--46522798
19
2.2
20
91
8
70
78
0
11
9
0.96
46522756--46522867
11
10.4
10
67
22
50
72
2
20
4
1.15
46529365--46529542
27
6.6
27
84
3
205
29
28
15
26
1.96
46529386--46529541
82
1.9
81
88
3
233
29
28
15
26
1.96
46537428--46537605
27
6.6
27
84
3
205
29
28
15
26
1.96
46537449--46537604
82
1.9
81
88
3
233
29
28
15
26
1.96
46539988--46540047
18
3.4
18
77
9
79
45
16
0
38
1.48
46539980--46540051
34
2.1
34
97
2
137
43
13
0
43
1.44
46540240--46540269
13
2.2
14
94
5
53
36
36
3
23
1.71
46540245--46540283
13
3.0
13
88
0
51
33
41
0
25
1.56
46540388--46540433
16
2.8
17
77
12
51
39
23
0
36
1.55
46542953--46543036
39
2.2
39
95
0
150
21
23
26
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46545176--46545209
17
2.0
17
88
11
52
61
5
0
32
1.20
46549057--46549232
48
3.7
47
81
7
171
26
16
31
25
1.96
46550327--46550366
21
2.0
21
85
5
55
17
37
22
22
1.94
46550890--46550933
20
2.3
19
84
11
54
45
2
2
50
1.27
46560259--46560481
3
74.3
3
86
7
310
30
2
2
65
1.19
46560584--46560640
28
2.0
29
83
10
73
26
8
0
64
1.22
46568029--46568070
20
2.1
20
95
0
75
28
16
9
45
1.79
46572727--46573176
177
2.6
176
86
1
616
29
20
23
27
1.99
46584223--46584489
3
89.3
3
83
9
323
29
2
3
65
1.21
46584548--46584604
28
2.0
29
83
10
73
26
8
0
64
1.22
46589382--46589406
12
2.1
12
100
0
50
16
8
36
40
1.77
46589837--46589956
42
2.8
44
77
7
138
20
22
22
35
1.96
46590317--46590411
43
2.2
43
83
5
111
25
24
22
28
1.99
46592260--46592431
46
3.7
46
96
0
308
21
21
27
29
1.99
46595377--46595454
30
2.6
29
77
16
79
14
17
12
55
1.70
46595386--46595456
15
4.7
15
76
11
74
12
19
11
56
1.66
46597868--46597977
56
2.0
56
98
0
211
26
24
27
21
1.99
46612925--46612984
10
6.0
10
84
11
79
21
8
1
68
1.25
46613701--46613734
17
1.9
18
94
5
61
26
8
5
58
1.51
46619343--46619404
5
12.4
5
76
21
51
24
0
0
75
0.80
46619345--46619408
8
7.8
8
78
13
67
25
0
0
75
0.81
46619343--46619408
13
4.8
13
83
10
87
24
0
0
75
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46619353--46619407
3
19.7
3
79
20
66
27
0
0
72
0.85
46622751--46622810
10
6.0
10
84
11
79
21
8
1
68
1.25
46622836--46622977
71
2.0
73
92
2
243
26
18
16
38
1.92
46623597--46623631
18
2.0
18
94
5
63
28
11
5
54
1.59
46646923--46646968
19
2.3
21
82
10
62
45
13
0
41
1.43
46647668--46647701
3
11.3
3
93
0
50
61
0
5
32
1.20
46647653--46647700
18
2.7
18
90
6
71
56
0
8
35
1.30
46647875--46647955
40
2.0
40
100
0
162
44
4
17
33
1.70
46648559--46648622
30
2.1
30
100
0
128
28
23
15
32
1.95
46648842--46648984
27
5.3
27
80
9
150
27
21
17
32
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297