Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  128  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44426626--44426693
11
6.0
11
77
19
77
61
0
1
36
1.05
44426629--44426716
11
8.0
11
72
22
53
61
0
1
37
1.04
44426629--44426727
12
8.7
12
68
29
58
60
0
1
38
1.04
44426615--44426748
34
4.1
32
75
11
119
59
1
0
38
1.12
44426626--44426719
43
2.1
42
84
13
118
60
0
1
38
1.04
44426792--44426827
14
2.6
13
91
8
54
77
0
2
19
0.88
44426793--44426828
18
1.9
19
94
5
65
77
0
2
19
0.88
44426826--44426876
25
2.1
23
82
13
59
74
7
11
5
1.21
44428540--44428573
17
2.0
17
88
0
50
44
8
8
38
1.67
44429061--44429142
41
2.0
42
85
2
112
35
1
0
63
1.02
44429346--44429449
52
2.0
52
98
0
199
31
9
18
40
1.83
44431883--44431945
30
2.1
30
90
0
99
55
14
4
25
1.58
44433570--44433594
8
3.1
8
100
0
50
12
12
0
76
1.04
44434055--44434106
24
2.2
24
89
0
77
55
9
1
32
1.43
44436292--44436350
3
19.7
3
89
0
91
32
3
1
62
1.21
44436422--44436473
23
2.3
23
82
0
59
28
7
5
57
1.50
44436584--44436621
20
1.9
20
84
10
51
18
7
5
68
1.34
44437648--44437691
24
2.0
24
82
13
58
68
4
4
22
1.27
44438176--44438238
10
6.4
10
77
14
60
3
9
20
66
1.34
44438176--44438229
24
2.2
25
80
3
65
1
11
20
66
1.32
44438189--44438238
20
2.5
20
87
9
68
4
6
20
70
1.25
44438882--44438965
39
2.2
39
93
0
141
40
20
25
14
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44441881--44441931
21
2.5
20
84
9
66
41
1
0
56
1.10
44442923--44442980
29
2.0
28
86
3
80
60
12
0
27
1.32
44443606--44443668
27
2.5
25
76
16
67
55
3
4
36
1.37
44445325--44445375
23
2.1
23
85
7
66
43
0
1
54
1.11
44445349--44445458
19
5.8
19
72
20
97
42
2
0
54
1.14
44445335--44445460
34
3.5
35
75
22
109
42
2
0
54
1.13
44445419--44445487
13
6.0
12
70
26
60
43
0
1
55
1.08
44445400--44445484
24
4.1
20
81
15
100
45
1
1
51
1.16
44445439--44445487
13
3.9
13
81
10
66
40
0
2
57
1.10
44445362--44445487
24
5.6
25
73
21
86
41
2
0
55
1.18
44445472--44445509
20
2.0
19
90
10
60
47
0
0
52
1.00
44445415--44445510
44
2.2
44
78
17
112
47
0
1
51
1.07
44445477--44445532
20
2.8
20
86
5
69
55
1
1
41
1.21
44445477--44445523
22
2.2
20
85
7
58
57
0
2
40
1.11
44445537--44445579
9
4.4
9
81
16
50
53
2
0
44
1.13
44445608--44445647
14
2.9
14
88
7
55
75
2
2
20
1.04
44445608--44445657
19
2.7
19
87
9
68
76
2
4
18
1.04
44445645--44445721
23
3.3
23
73
12
77
77
1
12
7
1.03
44445668--44445718
18
2.8
19
80
16
63
74
1
15
7
1.13
44446712--44446736
9
2.8
9
100
0
50
12
0
8
80
0.92
44446780--44446836
21
2.6
21
83
8
69
42
0
0
57
0.98
44446780--44446851
24
3.1
23
78
15
69
41
0
1
56
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44446851--44446911
22
2.7
22
85
10
70
40
1
0
57
1.08
44447054--44447083
13
2.4
13
94
5
53
43
0
0
56
0.99
44447159--44447202
20
2.2
20
84
8
54
45
2
4
47
1.35
44447192--44447233
22
2.0
22
95
4
77
57
0
0
42
0.99
44447174--44447234
20
3.0
20
81
13
70
52
0
1
45
1.10
44447198--44447294
34
2.8
33
91
8
167
58
0
0
41
0.98
44447225--44447271
22
2.1
22
84
7
60
55
0
0
44
0.99
44447306--44447332
13
2.1
13
100
0
54
40
14
0
44
1.46
44447344--44447379
4
8.5
4
88
11
54
77
0
0
22
0.76
44447334--44447379
17
2.8
17
87
9
60
73
0
0
26
0.83
44447334--44447383
21
2.4
22
86
10
77
74
0
0
26
0.83
44447347--44447415
8
8.5
8
73
7
59
76
1
1
20
0.94
44447401--44447466
21
3.3
21
79
8
84
77
1
4
16
1.01
44447613--44447651
13
3.5
11
89
10
53
48
0
0
51
1.00
44447630--44447711
29
2.8
31
79
18
88
50
0
1
48
1.08
44447666--44447742
20
3.8
20
74
5
82
51
0
0
48
1.00
44447667--44447742
21
3.8
20
72
6
64
52
0
0
47
1.00
44447681--44447748
33
2.0
36
85
8
97
55
0
0
44
0.99
44447727--44447781
23
2.4
23
75
6
58
47
5
0
47
1.25
44447842--44447886
19
2.4
18
85
7
63
77
2
11
8
1.07
44447823--44447895
37
1.9
39
83
10
98
73
2
9
13
1.18
44462771--44462811
7
5.9
7
100
0
82
41
29
14
14
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44465698--44465762
32
2.0
32
96
0
121
49
15
13
21
1.79
44468350--44468551
105
1.9
105
84
2
271
28
24
14
32
1.95
44474956--44475007
23
2.3
23
86
0
68
30
17
32
19
1.95
44485401--44485432
1
32.0
1
100
0
64
100
0
0
0
0.00
44485905--44485992
29
3.0
29
94
0
158
27
31
7
32
1.86
44487258--44487295
20
1.9
20
88
0
58
31
2
10
55
1.48
44488233--44488330
45
2.2
45
85
3
135
26
16
16
40
1.89
44490455--44491008
276
2.0
277
95
0
1002
26
20
19
33
1.97
44491981--44492018
20
1.9
20
89
10
60
10
7
7
73
1.24
44494087--44494130
22
2.0
23
90
4
72
50
2
0
47
1.13
44499608--44499674
35
1.9
35
82
11
84
37
2
1
58
1.23
44500073--44500119
23
2.0
24
84
12
62
40
4
4
51
1.41
44503453--44503494
16
2.6
16
80
0
57
50
0
0
50
1.00
44509024--44509060
18
2.1
18
89
0
56
51
13
8
27
1.69
44509571--44509608
18
2.1
18
85
9
51
36
2
0
60
1.11
44510040--44510210
85
2.0
85
97
0
324
26
26
11
35
1.90
44523693--44523739
16
2.9
16
74
20
53
17
21
0
61
1.34
44525490--44525581
46
2.0
46
95
0
166
31
19
10
38
1.86
44533078--44533110
6
5.5
6
92
0
57
12
0
3
84
0.72
44533850--44533903
23
2.4
22
81
9
63
55
1
1
40
1.21
44534472--44534516
23
2.0
23
81
0
54
35
6
0
57
1.25
44534606--44534654
26
2.0
26
88
8
75
30
0
6
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44534990--44535046
29
2.0
29
89
0
87
38
15
10
35
1.82
44536320--44536356
18
2.1
18
100
0
74
40
16
21
21
1.91
44537223--44537318
28
3.4
28
86
0
120
34
15
17
32
1.92
44537223--44537309
14
6.2
14
71
7
61
36
16
14
32
1.89
44537414--44537567
84
1.8
84
90
0
245
32
18
19
29
1.95
44537414--44537576
28
5.8
28
84
1
193
31
17
20
29
1.96
44540180--44540230
23
2.2
23
92
0
84
50
0
3
45
1.20
44543258--44543341
28
3.0
28
75
0
87
38
13
16
32
1.87
44543446--44543575
28
4.6
28
80
5
147
33
19
20
27
1.96
44551533--44551559
14
1.9
14
100
0
54
44
0
11
44
1.39
44557672--44557732
30
2.0
30
81
9
70
59
6
34
0
1.24
44562945--44562994
26
1.9
26
91
0
82
18
14
20
48
1.82
44567526--44567647
46
2.6
47
84
5
147
26
22
14
36
1.93
44572044--44572127
33
2.5
34
78
5
89
26
5
2
65
1.28
44572044--44572157
33
3.3
35
71
7
88
28
7
1
63
1.30
44572215--44572328
26
4.4
25
71
15
81
32
5
3
58
1.37
44572171--44572258
46
2.0
43
84
6
113
29
0
6
63
1.20
44572465--44572510
16
2.5
18
78
21
51
26
8
10
54
1.64
44577019--44577776
378
2.0
378
94
0
1329
25
23
17
33
1.96
44577621--44577825
105
2.0
105
84
3
270
27
25
13
33
1.94
44580381--44580438
21
2.9
21
75
17
52
43
5
12
39
1.64
44585783--44585869
21
4.0
23
80
10
92
37
25
21
14
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44587499--44587534
15
2.3
17
81
18
51
0
30
0
69
0.89
44590180--44590248
25
2.8
26
84
8
99
24
26
23
26
2.00
44590154--44590248
50
1.9
50
85
8
131
22
25
23
29
1.99
44590189--44590266
25
3.2
25
85
5
88
23
26
21
28
1.99
44592496--44592553
21
2.8
20
84
5
71
68
1
10
18
1.26
44592955--44593088
3
45.3
3
71
7
87
64
3
5
26
1.32
44592946--44593138
21
9.3
21
66
24
63
62
4
6
27
1.38
44593180--44593222
3
14.3
3
85
9
61
65
0
4
30
1.13
44594697--44594749
21
2.5
20
76
11
54
13
33
28
24
1.93
44597866--44598079
105
2.0
105
82
1
259
28
25
14
31
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297