Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  131  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45143814--45144045
27
8.6
27
83
2
259
43
20
15
19
1.87
45143820--45144045
82
2.8
80
86
4
292
44
21
15
19
1.87
45144561--45144882
109
3.0
108
84
4
427
35
16
16
31
1.92
45145012--45145043
4
7.8
4
96
3
55
75
3
0
21
0.95
45145827--45145864
17
2.3
16
90
4
58
84
2
7
5
0.86
45146698--45146932
46
5.1
46
90
4
375
31
26
14
26
1.95
45148299--45148331
14
2.3
15
89
5
50
24
33
15
27
1.95
45151861--45151903
21
2.0
22
86
4
61
27
2
11
58
1.46
45152306--45152363
14
4.4
13
77
16
57
46
10
1
41
1.48
45152332--45152374
13
3.3
12
87
9
50
51
6
0
41
1.29
45154066--45154109
17
2.4
17
85
11
52
29
0
2
68
1.02
45154083--45154117
17
2.1
17
94
0
61
20
0
8
71
1.11
45161050--45161199
42
3.5
42
78
13
137
32
28
16
22
1.96
45164141--45164171
8
3.9
8
91
0
53
58
0
0
41
0.98
45164138--45164172
16
2.2
16
100
0
70
54
0
0
45
0.99
45164138--45164181
16
3.0
15
87
9
56
56
2
0
40
1.11
45170061--45170094
11
3.1
11
86
0
50
55
2
23
17
1.55
45171411--45171825
144
2.9
144
100
0
830
40
4
11
43
1.60
45172593--45172737
41
3.5
41
92
0
236
29
20
26
23
1.98
45174061--45174101
15
2.7
16
85
11
59
24
7
2
65
1.30
45174233--45174257
12
2.1
12
100
0
50
24
8
0
68
1.16
45178512--45178575
23
2.6
25
83
14
80
46
6
3
43
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45178518--45178575
25
2.3
26
84
3
73
46
5
3
44
1.42
45179016--45179146
69
1.9
69
96
0
244
32
15
19
33
1.92
45178951--45179351
200
2.0
200
96
0
739
31
18
16
33
1.93
45179584--45179996
206
2.0
206
95
0
745
28
23
15
32
1.95
45185291--45185418
44
2.9
45
78
9
145
28
27
21
22
1.99
45185696--45185799
45
2.3
45
83
4
131
27
19
24
28
1.98
45185777--45186215
92
4.9
91
75
10
350
32
17
19
30
1.95
45185888--45186214
181
1.8
181
89
2
514
32
18
20
28
1.96
45186320--45186554
114
2.1
115
88
0
346
35
19
23
21
1.96
45187147--45187212
25
2.6
26
81
18
86
45
6
3
45
1.43
45187155--45187215
23
2.7
21
79
20
61
44
6
3
45
1.46
45194155--45194195
21
1.9
22
85
5
57
60
4
2
31
1.30
45195892--45195921
13
2.3
13
94
0
51
33
16
0
50
1.46
45197930--45197959
14
2.1
14
93
0
51
0
43
6
50
1.28
45198674--45198984
156
2.0
156
96
0
577
40
14
14
30
1.86
45199224--45199410
94
2.0
94
96
0
347
28
17
14
39
1.89
45199771--45199864
26
3.5
25
72
18
75
63
4
5
26
1.34
45201439--45201538
45
2.2
45
78
5
105
27
23
17
33
1.96
45201759--45202382
132
4.7
132
89
2
923
25
25
20
29
1.99
45201932--45202294
88
4.1
88
66
10
231
24
24
21
29
1.99
45202137--45202338
44
4.6
44
74
9
169
25
26
20
27
1.99
45202884--45203105
108
2.1
108
86
1
302
48
7
16
27
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45205602--45205637
3
12.0
3
93
0
63
33
2
0
63
1.08
45205757--45205818
20
2.7
23
76
18
67
40
4
1
53
1.32
45206158--45206452
111
2.7
110
86
4
427
30
16
19
33
1.94
45207811--45207849
16
2.4
17
83
12
55
35
5
2
56
1.35
45212588--45212648
3
19.3
3
80
9
68
63
0
6
29
1.19
45212540--45212646
24
4.4
25
72
18
70
63
3
5
27
1.34
45212590--45212673
21
3.9
21
82
4
87
59
0
10
29
1.31
45216457--45216528
37
2.0
37
89
5
112
25
22
16
36
1.94
45216492--45216760
46
5.6
46
89
6
331
28
21
14
35
1.93
45216634--45216760
52
2.6
45
77
16
130
27
22
14
35
1.93
45223790--45223832
21
2.0
22
90
4
70
58
9
2
30
1.42
45226112--45226260
76
2.0
76
100
0
298
34
11
10
43
1.74
45226240--45227034
396
2.0
396
98
0
1536
33
15
18
31
1.93
45230435--45230460
3
8.7
3
100
0
52
69
0
0
30
0.89
45231480--45231517
18
2.1
18
95
0
67
39
28
13
18
1.88
45245038--45245073
19
1.9
19
88
5
56
47
0
2
50
1.15
45246589--45246650
28
2.2
28
88
5
90
30
12
12
43
1.81
45246611--45246650
15
2.9
13
79
13
53
27
12
12
47
1.77
45247597--45247643
21
2.2
21
88
0
67
8
10
2
78
1.04
45247597--45247641
10
4.4
10
83
5
63
8
8
2
80
1.00
45247609--45247651
21
2.0
21
86
0
59
9
11
0
79
0.95
45248447--45248490
21
2.1
21
95
0
79
47
13
9
29
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45252840--45252877
18
2.1
18
100
0
76
18
0
15
65
1.27
45258572--45258610
16
2.4
16
91
0
60
48
5
17
28
1.68
45258631--45258659
10
2.9
10
100
0
58
51
0
27
20
1.47
45259149--45259235
45
1.9
45
88
0
129
19
32
10
37
1.86
45260284--45260340
28
2.0
28
93
0
96
42
5
15
36
1.70
45260761--45260821
26
2.5
24
77
20
63
9
14
1
73
1.16
45260761--45260824
24
2.5
27
79
18
75
9
15
1
73
1.16
45261078--45261118
21
2.0
21
90
0
64
31
2
2
63
1.20
45261199--45261235
6
6.2
6
87
12
58
86
0
13
0
0.57
45266021--45266109
47
2.0
44
84
8
117
47
2
7
42
1.45
45268299--45268356
26
2.2
26
96
0
107
34
6
24
34
1.82
45274350--45274452
44
2.3
43
80
9
111
31
20
14
33
1.93
45274905--45274938
14
2.4
14
95
0
59
58
5
17
17
1.57
45274923--45275224
71
4.2
72
81
5
374
33
19
16
30
1.94
45276040--45276121
42
2.0
42
87
4
121
12
23
14
50
1.76
45287325--45287392
27
2.5
29
69
23
67
48
8
7
35
1.62
45287718--45287776
26
2.4
23
76
17
64
59
5
1
33
1.29
45287820--45287908
35
2.6
35
81
8
96
65
3
2
29
1.21
45287824--45287883
26
2.4
25
81
13
61
63
5
1
30
1.25
45287838--45287898
16
3.6
16
77
12
59
63
3
3
29
1.26
45287833--45287927
37
2.5
35
78
10
91
64
4
3
28
1.28
45288245--45288277
17
1.9
17
88
11
50
81
6
12
0
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45289418--45289477
17
3.2
18
86
13
77
35
15
10
40
1.80
45289597--45289625
6
4.8
6
100
0
58
13
0
0
86
0.58
45293659--45293703
21
2.1
22
87
4
65
64
2
4
28
1.25
45304602--45304685
26
3.2
26
96
0
150
33
4
25
36
1.77
45319766--45319815
19
2.6
19
79
14
59
14
8
0
78
0.97
45320099--45320139
21
2.0
21
90
0
64
31
2
2
63
1.20
45321902--45321983
40
2.0
40
95
0
146
37
6
15
40
1.73
45324157--45324327
93
1.8
93
83
2
227
32
28
19
20
1.97
45334927--45335007
40
2.0
40
97
0
153
30
4
20
43
1.73
45335389--45335485
13
7.4
13
72
14
74
10
12
0
77
1.00
45335393--45335442
19
2.6
19
79
14
59
14
8
0
78
0.97
45335428--45335485
25
2.2
26
93
6
100
6
13
0
79
0.93
45335437--45335479
12
3.5
12
87
6
68
6
11
0
81
0.87
45349325--45349365
17
2.3
17
87
8
55
14
7
0
78
0.96
45358883--45358927
23
1.9
24
82
13
58
64
2
15
17
1.39
45362976--45363142
43
3.9
44
81
7
182
28
14
25
31
1.95
45364884--45364917
9
3.8
9
88
0
50
50
2
0
47
1.16
45371229--45371274
19
2.3
20
96
3
85
47
17
10
23
1.79
45371258--45371295
14
2.7
14
91
0
58
36
18
7
36
1.80
45386871--45386921
23
2.2
23
96
0
93
27
9
23
39
1.86
45392521--45392565
4
10.8
4
83
4
54
73
4
2
20
1.11
45392521--45392574
26
2.1
26
96
0
99
70
3
3
22
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45392610--45392876
3
88.0
3
69
10
105
61
3
7
26
1.39
45392718--45392762
22
2.2
20
84
8
54
64
2
8
24
1.34
45394258--45394283
12
2.2
12
100
0
52
7
15
30
46
1.74
45394338--45394547
41
5.1
41
89
0
287
31
24
21
21
1.98
45395579--45395617
19
2.1
19
90
4
62
46
2
2
48
1.29
45397528--45397567
19
2.0
20
90
4
64
17
15
20
47
1.83
45397866--45397978
57
2.0
56
92
0
181
41
7
19
30
1.80
45398368--45398448
42
1.9
42
100
0
162
49
7
8
34
1.62
45399016--45399044
15
1.9
15
100
0
58
24
6
20
48
1.74
45399694--45399733
21
1.9
21
94
0
71
30
10
12
47
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297