genome.fa.s25.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  96  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34649700--34649744	24	1.9	23	86	4	63	77	0	4	17	0.92
34649701--34649749	16	2.9	17	78	9	55	79	0	4	16	0.88
34651882--34651986	55	1.9	54	90	1	165	14	19	34	32	1.91
34658688--34658715	11	2.5	11	100	0	56	0	35	17	46	1.49
34667774--34667815	14	3.1	13	78	21	50	35	9	2	52	1.47
34668914--34668974	28	2.2	28	93	0	104	32	4	11	50	1.60
34672604--34672646	21	2.0	21	90	0	68	23	37	6	32	1.82
34673745--34673779	16	2.2	16	89	0	52	77	0	20	2	0.90
34678290--34678329	18	2.2	18	90	0	62	25	30	32	12	1.92
34684269--34684317	23	2.1	23	85	7	64	44	4	6	44	1.47
34686141--34686403	91	2.9	88	82	5	276	27	13	26	32	1.94
34687512--34687548	18	1.9	18	89	10	56	54	35	5	5	1.47
34698202--34698285	23	3.6	23	73	1	78	33	16	20	29	1.95
34706153--34706365	46	4.6	46	74	11	159	24	26	18	30	1.98
34706059--34706370	138	2.2	139	81	5	353	24	27	18	29	1.98
34716340--34716541	111	1.8	109	86	6	291	54	4	29	10	1.55
34718301--34718329	15	1.9	15	100	0	58	27	6	10	55	1.59
34727842--34727875	17	2.0	18	88	11	54	41	11	0	47	1.40
34735844--34736012	43	4.0	42	77	7	162	25	18	27	28	1.98
34743150--34743337	42	4.4	43	76	11	172	27	19	24	29	1.98
34743117--34743316	85	2.4	85	89	1	305	26	19	26	29	1.98
34743117--34743347	85	2.7	85	86	4	272	27	19	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34746566--34746662	41	2.3	43	81	10	128	23	17	27	30	1.97
34750221--34750299	37	2.1	37	90	0	122	25	31	18	24	1.98
34750418--34750828	47	8.7	47	97	0	750	29	30	8	32	1.86
34754463--34754641	40	4.5	40	92	0	277	26	27	21	23	1.99
34754755--34754826	36	2.0	36	97	0	135	43	22	4	30	1.72
34755762--34755866	55	1.9	55	92	0	174	20	25	16	37	1.93
34756572--34756663	43	2.1	44	93	4	168	26	27	18	28	1.98
34756659--34756790	40	3.3	40	86	2	176	26	28	21	23	1.99
34756775--34756852	40	1.9	41	82	10	97	28	28	20	23	1.99
34757058--34757116	28	2.1	28	100	0	118	15	23	10	50	1.74
34760811--34761007	40	4.9	40	84	2	200	25	27	22	23	2.00
34760811--34761007	80	2.5	81	81	5	222	25	27	22	23	2.00
34761311--34761391	29	2.8	29	86	5	110	25	33	14	25	1.95
34771863--34772137	49	5.7	49	81	8	294	31	26	16	25	1.96
34784721--34784841	39	3.1	38	80	7	93	44	9	9	35	1.71
34784750--34784841	39	2.4	38	89	3	139	44	9	8	36	1.68
34785732--34785875	38	3.8	38	79	1	164	16	18	26	38	1.91
34785732--34785875	76	1.9	76	85	5	202	16	18	26	38	1.91
34786570--34787005	238	1.8	238	86	2	624	23	21	28	25	1.99
34789199--34789244	16	2.7	18	77	16	53	78	10	4	6	1.08
34794537--34794626	41	2.2	41	89	0	135	30	31	13	25	1.94
34802291--34802449	27	5.9	27	81	11	175	33	20	25	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34802309--34802452	54	2.7	54	91	4	229	34	22	25	18	1.96
34806442--34806511	27	2.6	27	95	2	113	31	28	12	27	1.93
34806442--34806539	28	3.5	28	90	2	135	31	28	13	26	1.94
34812056--34812128	24	2.8	28	74	20	84	35	15	23	26	1.94
34812152--34812350	51	3.9	51	88	1	283	33	15	23	28	1.94
34813632--34814007	48	7.9	48	75	10	276	27	19	28	23	1.98
34813595--34814000	46	8.6	49	76	12	286	28	19	28	23	1.98
34818699--34818779	25	3.2	25	81	6	101	34	19	23	22	1.96
34819658--34819689	12	2.6	13	90	9	50	50	25	6	18	1.70
34825116--34825314	100	2.0	100	91	0	326	32	10	21	36	1.86
34850888--34850951	31	2.1	31	87	0	92	25	21	15	37	1.93
34851144--34851979	24	35.0	24	98	1	1610	28	20	20	29	1.98
34852033--34852075	20	2.2	20	100	0	86	32	18	11	37	1.87
34852112--34852159	25	1.9	25	86	0	69	25	16	25	33	1.96
34859609--34859672	31	2.1	31	87	0	92	25	21	15	37	1.93
34859865--34860700	24	35.0	24	98	1	1610	28	20	20	29	1.98
34860754--34860796	20	2.2	20	100	0	86	32	18	11	37	1.87
34860833--34860880	25	1.9	25	82	0	60	25	14	25	35	1.94
34863142--34863313	93	1.8	93	94	0	308	29	29	20	21	1.98
34863135--34863310	46	3.8	46	77	12	207	30	28	19	21	1.98
34864415--34864507	47	2.0	47	97	0	177	29	22	9	38	1.86
34868326--34868425	48	2.1	48	90	0	155	26	23	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34870814--34870985	93	1.8	93	96	0	317	28	29	21	20	1.98
34870807--34870982	46	3.8	45	80	12	214	29	28	21	20	1.98
34871337--34871445	54	2.0	54	98	0	209	30	18	10	41	1.83
34875784--34875885	44	2.4	43	82	8	118	34	23	19	22	1.97
34875728--34875885	43	3.7	42	77	8	122	31	22	19	26	1.98
34878214--34878476	40	6.6	40	88	3	325	24	20	27	26	1.99
34878253--34878511	80	3.3	80	85	3	256	25	20	27	25	1.99
34886156--34886378	40	5.6	40	86	3	236	24	20	28	26	1.99
34886231--34886413	79	2.3	80	81	1	217	25	20	28	25	1.99
34893907--34894065	43	3.7	43	80	9	157	31	25	17	25	1.97
34900372--34900785	48	8.8	48	89	3	617	26	18	26	28	1.98
34900740--34900828	42	2.1	42	84	12	112	26	15	26	30	1.96
34901279--34901336	20	2.9	20	81	0	71	36	34	12	17	1.87
34908727--34908904	27	6.6	27	83	3	178	30	28	14	26	1.95
34908748--34908903	82	1.9	81	86	3	224	30	28	14	26	1.95
34916360--34916472	57	2.0	57	98	0	217	32	21	23	22	1.98
34916981--34917130	27	5.5	27	80	4	140	28	28	16	27	1.97
34921313--34921392	37	2.2	37	90	2	126	40	13	16	30	1.87
34921791--34921836	23	2.0	23	95	0	83	28	13	10	47	1.76
34938381--34938443	31	2.0	31	96	0	117	22	23	15	38	1.93
34938655--34938831	49	3.6	48	78	6	180	23	27	20	28	1.99
34938895--34939017	46	2.7	45	82	7	142	25	28	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34947768--34947919	27	5.6	27	92	3	223	30	29	13	25	1.94
34947768--34947926	55	2.9	55	91	0	255	31	29	13	25	1.94
34951026--34951145	60	2.0	60	98	0	231	37	0	17	45	1.49
34951526--34951655	66	1.9	68	84	7	174	33	15	30	20	1.93
34963060--34963183	50	2.5	48	85	3	149	29	26	16	26	1.97
34966537--34966656	46	2.6	46	84	6	145	23	25	20	30	1.98
34970423--34970477	27	2.1	26	83	6	67	29	23	0	47	1.52
34972273--34972345	31	2.4	31	83	0	92	39	6	9	43	1.64
34973106--34973134	3	9.7	3	100	0	58	65	0	0	34	0.93
34975780--34975817	19	2.0	19	100	0	76	31	10	21	36	1.87
34976025--34976085	27	2.2	29	79	8	72	55	6	3	34	1.42
34980765--34980799	15	2.3	15	95	0	61	17	17	17	48	1.81
34981702--34981731	14	2.1	15	93	6	53	26	13	6	53	1.64
34996021--34996077	29	2.0	28	89	3	87	19	22	26	31	1.98
35007918--35008119	63	3.0	64	83	13	280	29	18	20	30	1.97
35009008--35009186	27	6.6	27	83	5	191	29	27	15	27	1.96
35009034--35009184	82	1.9	81	87	4	223	28	27	15	27	1.96
35009736--35009760	13	1.9	13	100	0	50	32	16	20	32	1.94
35011246--35011305	21	2.9	21	97	0	111	46	0	8	45	1.33
35013171--35013203	16	2.1	16	94	0	57	57	15	12	15	1.65
35013578--35013759	84	2.2	84	91	0	292	31	22	14	31	1.94
35014091--35014121	15	2.1	15	93	0	53	41	45	0	12	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35014107--35014238	49	3.0	42	78	14	138	45	32	2	19	1.63
35014088--35014214	49	2.6	48	86	7	166	45	34	2	17	1.61
35014107--35014198	21	4.4	21	70	12	64	44	34	3	17	1.65
35014125--35014233	49	2.2	49	88	3	157	46	32	1	19	1.60
35014099--35014246	42	3.5	42	75	10	124	44	33	2	19	1.62
35015283--35015372	27	3.2	27	85	7	119	32	23	24	20	1.98
35015478--35015541	28	2.3	28	91	5	103	29	7	29	32	1.86
35023176--35023254	27	2.9	27	86	7	106	32	20	24	22	1.97
35023369--35023460	28	3.3	28	93	3	150	31	7	28	32	1.85
35025552--35025605	22	2.5	21	82	14	58	27	0	24	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297