Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  150  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51636465--51636692
115
2.0
115
94
0
402
27
15
29
27
1.96
51642221--51642289
34
2.0
34
94
0
120
47
1
18
31
1.58
51647385--51647431
22
2.1
23
88
4
69
63
4
0
31
1.13
51649235--51649285
21
2.4
21
80
3
57
45
9
11
33
1.74
51655580--51655639
30
2.0
30
86
0
84
58
15
1
25
1.46
51655676--51655702
14
1.9
14
100
0
54
51
14
11
22
1.73
51664612--51664691
32
2.5
32
97
0
151
51
2
1
45
1.22
51665582--51665606
13
1.9
13
100
0
50
8
0
8
84
0.79
51670609--51670657
2
24.5
2
100
0
98
0
48
0
51
1.00
51671649--51671692
21
2.1
21
95
0
79
22
4
29
43
1.73
51675398--51675449
6
9.3
6
76
19
51
30
0
0
69
0.89
51686858--51687060
46
4.3
48
88
7
265
35
14
21
28
1.92
51686792--51687060
98
2.7
98
93
0
457
34
14
22
28
1.93
51687024--51687169
37
4.0
37
93
1
242
36
16
21
24
1.94
51696127--51696324
91
2.2
92
83
7
242
35
14
10
39
1.80
51696445--51696553
29
3.8
28
74
12
80
60
1
2
34
1.22
51696483--51696525
19
2.2
20
87
4
61
55
0
6
37
1.27
51696773--51696847
38
2.0
38
87
7
109
28
5
2
64
1.29
51696794--51696847
19
2.8
19
74
0
63
31
1
1
64
1.14
51696821--51696942
28
4.2
28
75
12
104
34
2
2
60
1.23
51696803--51696942
9
14.7
9
68
18
52
32
2
2
62
1.19
51714667--51714730
34
1.9
34
84
9
87
35
4
4
54
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51715634--51715718
43
2.0
43
97
0
161
25
11
20
42
1.86
51715647--51715735
43
2.1
43
80
0
97
32
13
12
41
1.82
51715725--51715753
14
2.1
14
100
0
58
44
13
6
34
1.71
51718914--51718969
24
2.3
23
80
14
60
42
5
1
50
1.35
51719234--51719262
14
2.1
14
100
0
58
48
0
0
51
1.00
51719937--51720030
47
2.0
47
100
0
188
29
27
4
38
1.76
51721242--51721358
51
2.3
51
85
2
146
23
23
18
35
1.96
51726536--51726657
37
3.0
37
68
26
95
30
15
24
29
1.96
51726594--51726664
37
1.9
37
94
0
124
28
14
28
29
1.95
51744479--51744512
17
2.0
17
94
0
59
44
0
0
55
0.99
51749388--51749446
23
2.5
22
72
20
57
62
6
5
25
1.41
51749635--51749664
6
5.0
6
95
0
51
20
16
46
16
1.84
51749854--51749930
30
2.6
30
91
0
118
11
18
37
32
1.87
51755799--51755846
20
2.3
21
82
13
64
39
0
0
60
0.97
51755911--51755963
26
2.1
25
85
3
70
37
5
1
54
1.35
51757838--51757867
14
2.1
14
93
0
51
50
16
0
33
1.46
51757836--51757866
16
1.9
16
100
0
62
51
16
0
32
1.44
51761756--51761866
47
2.4
47
83
6
145
26
16
22
35
1.95
51763194--51763235
12
3.1
14
80
13
52
52
0
0
47
1.00
51763197--51763235
13
3.1
12
82
13
51
53
0
0
46
1.00
51764724--51764938
108
2.0
109
90
2
344
36
14
14
34
1.87
51767716--51767751
10
3.5
10
96
3
63
36
0
0
63
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51770566--51770598
4
8.2
4
100
0
66
27
0
24
48
1.51
51773045--51773077
2
16.5
2
100
0
66
51
48
0
0
1.00
51773959--51774033
37
2.0
37
100
0
150
44
8
21
26
1.80
51774912--51774961
19
2.8
17
80
11
64
44
0
0
56
0.99
51775983--51776035
16
3.5
14
82
10
52
69
0
1
28
0.99
51775983--51776034
18
3.2
16
77
17
54
71
0
1
26
0.97
51777364--51777401
20
2.1
19
85
14
53
39
0
7
52
1.31
51784966--51785002
14
2.5
16
87
12
53
45
0
0
54
1.00
51785648--51785744
48
2.0
48
100
0
194
42
22
6
28
1.78
51794465--51794489
9
2.8
9
100
0
50
32
0
0
68
0.90
51795245--51795283
16
2.5
16
95
4
71
46
5
12
35
1.65
51803290--51803321
3
10.7
3
100
0
64
34
0
0
65
0.93
51803529--51803648
47
2.5
49
79
5
136
40
4
14
40
1.65
51807154--51807199
18
2.6
17
76
6
56
45
0
4
50
1.21
51807488--51807583
43
2.2
44
88
3
142
41
3
11
43
1.56
51819045--51819084
15
2.6
15
84
4
53
30
2
0
67
1.04
51823598--51823630
15
2.1
16
94
5
59
33
6
0
60
1.21
51824978--51825091
60
1.9
59
94
1
201
34
14
6
45
1.69
51830264--51830311
24
2.0
24
87
0
69
22
18
8
50
1.74
51837866--51837918
25
2.1
25
83
13
65
35
3
1
58
1.27
51837977--51838007
16
2.0
16
93
6
55
67
6
0
25
1.14
51841789--51841851
13
4.8
13
73
11
56
46
22
1
30
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51846825--51847039
107
2.0
107
97
0
403
43
14
9
31
1.78
51847278--51847305
3
9.3
3
100
0
56
67
0
0
32
0.91
51850363--51850505
67
2.1
69
80
7
159
56
2
3
37
1.28
51850444--51850503
21
3.2
17
74
21
57
63
0
1
35
1.05
51856103--51856150
5
9.6
5
82
17
64
39
0
0
60
0.97
51856102--51856143
13
3.3
13
93
6
77
38
0
0
61
0.96
51857870--51858008
45
2.9
49
78
11
144
19
20
18
41
1.91
51857893--51857997
45
2.3
45
90
0
156
19
20
19
41
1.90
51858171--51858470
18
16.3
18
73
8
192
36
11
14
38
1.82
51858430--51858469
17
2.3
17
86
4
53
35
10
17
37
1.83
51859107--51859241
59
2.3
60
76
12
145
22
16
18
42
1.89
51860898--51861076
3
58.3
3
76
9
94
31
9
1
56
1.41
51861255--51861296
22
1.9
22
85
9
59
23
9
7
59
1.53
51861251--51861320
25
2.6
27
75
6
72
24
8
4
62
1.42
51861273--51861355
40
2.1
40
84
8
107
26
9
1
62
1.33
51861401--51861537
3
43.0
3
76
16
93
33
1
4
60
1.25
51861554--51861620
7
9.3
7
74
11
55
29
1
2
65
1.16
51863084--51863191
26
4.2
26
93
0
189
32
7
24
36
1.83
51866672--51866710
20
2.0
20
84
0
51
30
5
2
61
1.31
51866728--51866850
26
4.8
26
82
4
144
30
3
5
60
1.35
51866728--51866845
53
2.3
50
82
8
148
30
3
5
60
1.37
51866795--51866888
49
1.9
49
80
8
111
29
5
3
61
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51866983--51867056
26
2.8
26
79
4
78
35
8
1
55
1.38
51868681--51868736
21
2.6
22
78
13
55
53
5
5
35
1.47
51868781--51868820
18
2.2
19
86
4
55
60
5
0
35
1.19
51868781--51868826
13
3.2
14
82
11
58
58
6
0
34
1.24
51868920--51868963
19
2.4
19
88
7
65
61
2
0
36
1.09
51869324--51869356
3
11.3
3
93
6
59
69
0
0
30
0.88
51869324--51869357
14
2.4
14
95
5
59
70
0
0
29
0.87
51869919--51869953
16
2.2
16
89
0
52
11
0
2
85
0.69
51871152--51871186
18
1.9
18
88
0
52
45
8
8
37
1.65
51873720--51873773
3
18.0
3
100
0
108
66
0
0
33
0.92
51875925--51876008
26
3.2
26
91
0
132
32
4
26
36
1.77
51877506--51877614
13
7.6
14
68
24
50
50
0
1
46
1.18
51877558--51877594
16
2.3
16
86
13
58
40
0
0
59
0.97
51878276--51878348
31
2.4
31
83
4
94
32
8
10
47
1.68
51886923--51886954
17
1.9
16
93
6
55
84
0
3
12
0.74
51893582--51893727
72
2.0
75
90
4
235
43
14
17
23
1.86
51901728--51901757
2
15.5
2
93
6
53
50
0
0
50
1.00
51904383--51904441
29
2.0
29
96
0
109
42
16
1
38
1.59
51922808--51922851
21
2.1
21
91
0
70
20
29
20
29
1.98
51927596--51927636
21
2.0
21
90
0
64
19
29
21
29
1.98
51931348--51931383
17
2.1
17
94
0
63
36
8
8
47
1.64
51932266--51932300
18
2.0
17
94
5
61
42
0
0
57
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51935772--51935836
22
2.7
25
77
22
77
58
7
4
29
1.46
51935849--51935924
11
6.5
11
75
14
62
52
3
3
39
1.38
51935810--51935933
13
9.9
13
70
20
52
54
5
3
36
1.40
51941182--51941244
28
2.2
28
85
0
81
31
30
6
31
1.83
51941719--51941804
44
2.0
43
86
8
122
45
24
8
22
1.79
51945077--51945236
26
6.2
26
97
0
275
32
7
23
36
1.83
51949271--51949353
24
3.7
23
66
12
64
46
22
10
19
1.80
51949266--51949350
44
1.9
44
87
0
125
45
22
10
21
1.82
51949594--51949680
40
2.1
41
85
2
113
65
9
2
22
1.33
51951459--51951492
12
2.9
12
86
4
52
32
0
0
67
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297