genome.fa.s25.2.7.7.80.10.50.1000.268.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  268  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91342689--91342905	47	4.7	45	75	6	159	25	28	19	25	1.99
91344858--91344956	51	1.9	51	95	0	180	32	24	11	32	1.90
91357156--91357283	47	2.7	46	81	7	150	22	29	19	28	1.98
91365427--91365451	13	1.9	13	100	0	50	88	4	8	0	0.64
91366534--91366608	29	2.6	28	85	10	89	29	14	29	26	1.95
91366564--91366891	174	1.9	174	94	0	584	30	14	24	30	1.95
91370183--91370360	27	6.6	27	84	3	205	29	28	15	26	1.96
91370204--91370359	82	1.9	81	88	3	233	29	28	15	26	1.96
91370842--91370868	12	2.2	12	100	0	54	40	0	7	51	1.30
91375684--91375868	79	2.3	82	83	7	229	25	27	22	24	2.00
91375684--91375868	40	4.7	40	83	6	225	25	27	22	24	2.00
91378257--91378294	19	2.0	19	85	10	51	71	0	10	18	1.14
91379020--91379052	14	2.5	13	90	9	57	60	12	15	12	1.59
91384690--91384792	28	3.7	28	84	5	127	26	15	33	25	1.95
91388256--91388290	17	2.1	17	94	0	61	22	40	2	34	1.69
91394925--91395140	40	5.4	40	86	4	244	25	29	21	23	1.99
91396275--91396328	27	2.0	27	96	0	99	3	35	3	57	1.34
91397226--91397267	22	1.9	22	90	0	66	26	54	7	11	1.62
91398310--91398357	24	2.0	24	95	0	87	22	20	27	29	1.99
91406713--91406755	18	2.5	17	80	3	50	48	6	4	39	1.51
91407836--91407933	40	2.3	41	81	11	110	29	27	16	26	1.97
91416755--91416933	85	2.1	85	100	0	358	26	27	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91417307--91417339	17	1.9	17	93	0	57	39	0	6	54	1.25
91424679--91424907	49	4.6	49	76	5	176	23	17	27	31	1.97
91424728--91424915	100	1.9	100	88	4	290	23	20	26	30	1.98
91424743--91424950	100	2.1	100	80	3	222	24	19	26	29	1.98
91425289--91425348	30	2.0	30	96	3	113	46	3	13	36	1.60
91430151--91430200	25	2.0	25	88	0	73	32	26	18	24	1.97
91439820--91440134	48	6.6	46	82	8	281	27	30	17	24	1.97
91439864--91440134	96	2.8	97	89	2	422	28	32	16	22	1.96
91439865--91440134	144	1.9	145	90	2	436	28	31	17	22	1.96
91449277--91449331	17	3.5	17	70	27	57	10	30	40	18	1.85
91449256--91449331	30	2.5	30	89	0	116	14	30	36	18	1.91
91458648--91458695	20	2.4	21	86	13	66	35	2	4	58	1.29
91462858--91462905	14	3.7	13	81	16	55	75	2	10	12	1.14
91462873--91462903	11	2.7	11	95	5	53	77	0	9	12	0.99
91462858--91462904	11	3.8	12	83	13	51	74	2	10	12	1.16
91465128--91465177	15	2.9	17	77	17	50	74	2	14	10	1.16
91471268--91471336	33	2.1	33	84	12	90	50	15	7	26	1.70
91475797--91475866	25	2.8	25	91	0	104	27	22	22	27	1.99
91476676--91476737	27	2.3	27	83	5	81	17	22	22	37	1.94
91476771--91476979	27	7.7	27	76	6	136	30	9	20	40	1.83
91477011--91477102	27	3.4	27	84	0	121	40	6	22	30	1.79
91479226--91479317	13	6.9	13	72	14	62	34	18	2	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91479233--91479350	27	4.5	24	70	17	58	35	18	1	44	1.60
91479226--91479344	40	3.0	39	81	7	141	35	19	1	43	1.61
91480805--91480904	41	2.4	42	80	10	114	30	28	17	25	1.97
91487082--91487153	30	2.4	30	83	4	83	22	19	27	30	1.98
91487162--91487284	56	2.2	56	86	0	174	23	12	22	41	1.87
91489850--91489973	47	2.6	47	96	0	230	25	20	25	28	1.99
91489808--91490026	47	4.7	48	81	9	190	24	20	26	28	1.99
91496622--91496682	26	2.3	26	86	5	88	44	14	9	31	1.78
91500920--91500993	29	2.6	29	89	4	105	25	16	32	25	1.96
91505946--91506163	40	5.5	40	87	4	284	24	28	23	22	1.99
91514989--91515047	17	3.4	17	70	21	50	30	1	28	38	1.67
91519120--91519200	42	1.9	42	82	7	101	29	25	13	30	1.94
91524026--91524055	8	3.8	8	100	0	60	66	0	13	20	1.24
91525073--91525110	17	2.4	17	82	8	53	26	2	2	68	1.16
91528242--91528330	44	2.0	44	97	0	169	33	22	5	38	1.78
91530314--91530379	20	3.3	20	70	8	71	48	3	3	45	1.33
91530303--91530379	40	1.9	40	100	0	154	46	5	5	42	1.48
91531887--91531920	16	2.0	18	88	11	54	26	5	2	64	1.30
91532749--91532788	6	6.8	6	85	5	55	62	0	20	17	1.33
91532749--91532788	17	2.3	18	86	4	55	62	0	20	17	1.33
91535751--91535793	16	2.8	15	77	16	52	60	2	0	37	1.10
91538048--91538148	51	2.0	52	80	9	118	50	0	5	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91544921--91545007	21	4.0	23	80	10	92	37	25	21	14	1.92
91545804--91546096	147	2.0	147	98	0	568	32	18	9	39	1.83
91546639--91546693	27	1.9	30	82	10	71	3	20	5	70	1.22
91552970--91553052	21	3.9	21	77	3	67	37	26	20	15	1.93
91552968--91553042	21	3.5	22	78	9	82	38	26	20	14	1.91
91554539--91554593	27	1.9	30	82	10	71	3	20	5	70	1.22
91554627--91554658	4	8.0	4	100	0	64	25	0	0	75	0.81
91554977--91555129	77	2.0	77	97	0	288	26	22	13	37	1.91
91572884--91573250	46	7.5	46	69	13	230	43	16	9	30	1.79
91572909--91573302	54	7.7	54	73	14	377	43	16	8	30	1.78
91572881--91573292	100	4.1	100	97	0	761	44	15	8	30	1.78
91574247--91574325	32	2.5	32	91	4	124	51	20	1	26	1.55
91574307--91574353	21	2.1	21	88	7	67	48	19	0	31	1.49
91579707--91579785	39	2.0	39	100	0	158	27	25	8	37	1.86
91586902--91586940	19	2.1	19	85	0	51	48	23	20	7	1.75
91603610--91603637	14	2.0	14	100	0	56	21	14	14	50	1.78
91607720--91607767	20	2.5	20	86	3	62	64	2	6	27	1.28
91607788--91607819	15	2.1	15	94	0	55	46	9	0	43	1.35
91610009--91610033	4	6.2	4	100	0	50	52	0	0	48	1.00
91613001--91613038	18	2.1	18	90	0	58	57	7	7	26	1.54
91615991--91616072	25	3.3	25	87	0	119	30	18	21	29	1.97
91616001--91616081	25	3.2	24	81	6	81	27	20	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91616061--91616118	25	2.3	25	85	5	73	32	25	17	24	1.96
91619747--91620749	39	25.6	39	97	1	1811	23	28	22	25	2.00
91628452--91628516	26	2.5	26	75	9	69	53	0	1	44	1.09
91628474--91628533	21	3.1	20	68	22	56	50	0	1	48	1.11
91628478--91628519	16	2.6	17	85	7	52	52	0	2	45	1.13
91628474--91628549	37	2.1	37	87	0	107	48	2	1	47	1.24
91632001--91632044	4	11.0	4	100	0	88	25	0	25	50	1.50
91638854--91638886	15	2.1	16	94	5	59	60	3	12	24	1.46
91644693--91644719	14	1.9	14	100	0	54	37	3	22	37	1.72
91646701--91646806	56	1.9	55	96	0	185	27	22	4	44	1.72
91651651--91651685	18	1.9	18	88	0	52	54	17	5	22	1.64
91653200--91653272	22	3.5	21	78	12	62	42	16	6	34	1.75
91653200--91653257	22	2.6	22	81	7	64	41	17	5	36	1.72
91653236--91653358	19	6.8	19	87	10	195	37	14	11	36	1.82
91653236--91653358	54	2.3	54	98	0	237	37	14	11	36	1.82
91653236--91653355	35	3.3	36	87	6	181	37	15	11	35	1.83
91660701--91660760	20	2.9	20	82	5	66	65	1	1	31	1.13
91660717--91660760	7	5.9	7	82	12	52	65	2	0	31	1.05
91660691--91660785	39	2.4	41	80	18	105	62	1	3	33	1.18
91660625--91660763	27	5.0	27	71	17	81	58	2	4	35	1.30
91660717--91660760	23	2.0	23	86	13	65	65	2	0	31	1.05
91661928--91662038	48	2.4	48	93	3	190	24	9	32	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91663105--91663208	27	3.9	27	80	9	106	37	21	23	18	1.94
91664833--91664887	25	2.2	26	96	3	103	36	27	5	30	1.79
91667077--91667182	40	2.7	40	82	2	124	28	25	24	21	1.99
91671167--91671222	25	2.4	23	78	21	64	53	3	0	42	1.18
91671170--91671223	23	2.3	23	80	20	60	55	3	0	40	1.17
91708292--91708332	17	2.2	18	87	12	57	48	0	29	21	1.50
91709254--91709811	279	2.0	279	99	0	1107	39	20	13	25	1.90
91709963--91710172	40	5.3	40	86	2	239	25	26	23	24	2.00
91722860--91723027	77	2.2	77	90	0	255	29	18	27	23	1.98
91725081--91725140	24	2.4	25	86	10	79	20	1	5	73	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297