Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  118  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42164141--42164228
2
44.0
2
100
0
176
0
0
50
50
1.00
42165991--42166050
31
1.9
31
100
0
120
36
10
13
40
1.78
42168786--42168836
21
2.5
21
76
20
54
60
1
0
37
1.08
42188702--42189068
148
2.5
146
93
1
610
31
23
18
26
1.97
42189191--42189238
17
2.8
17
81
12
53
29
6
0
64
1.18
42189210--42189255
8
5.2
9
79
10
51
26
2
4
67
1.21
42189210--42189273
17
3.8
17
79
6
67
28
1
3
67
1.15
42189328--42189367
20
2.0
20
85
0
53
25
7
2
65
1.32
42189734--42189875
37
3.9
36
72
10
108
47
19
18
14
1.82
42189756--42189970
73
2.9
73
90
0
322
46
19
19
14
1.84
42189819--42189933
36
3.2
36
69
20
103
45
18
20
15
1.86
42189749--42189946
37
5.4
37
69
16
115
45
19
20
14
1.85
42189952--42190025
35
2.1
36
85
9
100
52
16
14
16
1.75
42190362--42190392
16
1.9
16
93
0
53
41
0
0
58
0.98
42197654--42197722
16
4.2
16
92
3
120
24
1
37
36
1.65
42197654--42197722
33
2.1
32
94
2
120
24
1
37
36
1.65
42197703--42197793
45
2.0
45
85
2
121
27
6
28
37
1.82
42197958--42197992
18
2.0
17
88
5
52
54
0
0
45
0.99
42198078--42198112
18
2.0
17
88
5
52
54
0
0
45
0.99
42197941--42198683
120
6.2
120
99
0
1432
48
6
1
43
1.38
42201715--42201824
33
3.3
33
81
11
136
31
8
17
42
1.78
42201771--42201975
51
4.0
51
98
1
387
28
7
18
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42202042--42202222
86
2.1
86
98
1
355
47
7
4
40
1.52
42214145--42214336
98
1.9
99
86
1
269
31
22
15
30
1.95
42221339--42221372
18
1.9
17
88
5
50
73
5
8
11
1.24
42222400--42222447
23
2.2
22
81
7
53
29
8
0
62
1.24
42223325--42223398
8
8.8
8
78
10
76
31
1
1
66
1.09
42223326--42223388
17
3.8
16
85
10
83
30
1
1
66
1.10
42223325--42223388
25
2.6
25
84
0
83
31
1
1
65
1.11
42223326--42223411
36
2.5
36
85
9
108
32
2
2
62
1.20
42223324--42223398
17
4.4
16
82
12
80
30
1
1
66
1.08
42223325--42223409
17
5.0
16
78
19
59
32
2
2
62
1.21
42223453--42223492
20
2.0
20
85
0
53
25
7
2
65
1.32
42223905--42224021
37
3.2
36
71
16
105
48
17
16
17
1.81
42223919--42224033
36
3.2
35
69
16
90
45
19
16
19
1.86
42223896--42224110
73
2.9
73
83
0
268
45
18
18
17
1.86
42224454--42224503
14
3.6
14
76
10
50
34
8
2
56
1.40
42227283--42227360
39
2.0
39
94
0
138
50
11
24
14
1.75
42235616--42235691
11
6.8
11
68
24
52
55
1
1
42
1.16
42235558--42235656
51
1.9
51
87
4
146
49
5
2
43
1.36
42236026--42236581
285
2.0
278
86
4
767
36
17
13
33
1.88
42239184--42239247
21
3.3
21
66
20
66
45
14
9
31
1.76
42239184--42239258
37
2.0
37
100
0
150
44
16
10
29
1.81
42240941--42241006
33
2.0
33
96
0
123
28
9
13
48
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42243219--42243261
12
3.7
12
90
3
70
65
0
2
32
1.06
42243300--42243349
26
1.9
26
88
8
75
64
2
0
34
1.05
42243299--42243351
22
2.3
23
78
15
65
64
1
0
33
1.05
42244027--42244075
25
2.0
25
100
0
98
65
0
12
22
1.26
42247892--42247938
20
2.3
21
81
7
60
55
2
6
36
1.37
42258749--42258779
7
4.4
7
100
0
62
48
0
0
51
1.00
42262179--42262253
20
3.8
20
76
3
71
48
2
38
10
1.52
42264460--42264784
133
2.4
133
81
9
369
26
25
18
29
1.98
42264593--42265187
177
3.4
176
82
5
691
27
25
16
30
1.97
42264948--42265186
45
5.4
44
70
11
175
29
28
14
28
1.95
42264377--42264997
311
2.0
309
80
6
691
26
25
17
30
1.97
42277402--42277442
17
2.4
17
95
0
73
53
17
14
14
1.73
42279119--42279194
11
6.9
11
79
10
68
64
3
1
30
1.20
42279115--42279194
22
3.6
22
77
12
76
65
3
2
28
1.23
42279117--42279223
19
5.5
19
71
21
64
66
3
2
27
1.22
42279096--42279292
3
67.7
3
67
19
80
61
2
7
28
1.37
42280978--42281145
83
2.0
84
98
1
329
20
11
21
46
1.82
42304685--42304728
20
2.2
20
87
0
61
52
0
0
47
1.00
42305915--42306031
15
8.1
14
72
17
62
26
7
0
64
1.26
42305903--42306010
29
3.8
28
73
22
82
26
7
1
63
1.31
42305978--42306023
15
2.9
15
90
6
65
26
6
0
67
1.15
42305946--42306067
52
2.4
54
74
18
125
27
7
0
64
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42312862--42312958
45
2.2
45
81
7
108
30
18
22
27
1.97
42312834--42314002
178
6.4
178
77
8
1122
30
18
23
28
1.97
42313609--42313656
22
2.2
22
88
7
71
33
14
31
20
1.93
42313683--42313783
44
2.3
43
78
8
105
30
20
25
22
1.98
42313433--42313833
200
2.0
200
90
1
635
31
17
23
27
1.97
42313773--42313868
45
2.1
44
83
7
113
33
16
21
28
1.95
42313256--42313994
378
2.0
378
90
0
1174
30
18
23
27
1.98
42313838--42314113
133
2.1
133
90
0
435
30
20
21
27
1.98
42314084--42314568
44
11.0
44
64
15
180
33
20
23
23
1.97
42314090--42314568
88
5.4
87
89
3
692
32
20
22
23
1.97
42314090--42314568
177
2.7
175
88
3
719
32
20
22
23
1.97
42314090--42314568
265
1.8
265
89
2
766
32
20
22
23
1.97
42315462--42315617
44
3.6
43
77
13
135
28
7
0
64
1.24
42315448--42315617
87
2.0
86
83
12
215
27
7
1
64
1.27
42315464--42315582
15
8.1
15
73
19
74
26
6
0
65
1.23
42315459--42315572
29
3.9
30
71
10
101
28
7
0
64
1.26
42315725--42315781
25
2.3
25
78
6
62
35
7
1
56
1.37
42319211--42319287
31
2.5
31
78
6
84
61
5
0
33
1.19
42319253--42319296
23
1.9
23
81
9
54
59
4
0
36
1.18
42321087--42321290
46
4.5
46
80
9
231
20
22
13
43
1.86
42321087--42321297
90
2.3
92
84
4
284
20
22
12
43
1.86
42332820--42332880
25
2.4
25
100
0
122
44
6
0
49
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42335134--42335195
30
2.1
29
82
11
72
17
12
12
56
1.67
42337396--42337510
59
1.9
60
96
1
214
42
10
11
35
1.75
42339362--42339422
23
2.6
24
74
10
63
34
0
1
63
1.04
42343967--42343998
15
2.1
15
94
0
55
68
9
9
12
1.39
42346253--42346327
32
2.4
33
73
13
77
28
5
0
66
1.13
42347958--42348034
37
2.1
35
81
9
84
68
2
3
24
1.19
42347966--42348152
10
19.3
9
69
17
67
62
3
2
31
1.27
42348081--42348124
21
2.0
21
86
4
61
68
4
2
25
1.20
42348597--42348632
18
1.9
19
88
5
56
25
2
2
69
1.15
42348697--42348748
8
6.1
8
80
12
59
34
1
1
61
1.18
42348696--42348857
10
17.8
9
71
15
86
35
3
2
59
1.26
42348773--42348821
19
2.6
19
87
3
64
40
2
2
55
1.23
42349801--42349853
27
2.0
26
85
10
72
45
7
5
41
1.56
42351825--42351860
17
2.1
18
89
5
56
69
0
2
27
1.02
42352030--42352076
24
1.9
24
82
4
58
29
0
4
65
1.11
42376692--42376752
30
2.0
30
90
6
97
42
27
9
19
1.83
42376900--42377286
77
4.8
79
73
13
238
35
18
16
29
1.93
42376875--42377336
79
5.8
78
74
11
251
33
19
16
30
1.94
42377108--42377336
75
3.0
75
83
5
264
32
18
17
31
1.94
42377337--42377922
127
4.4
127
73
17
574
33
20
17
28
1.95
42377949--42378162
73
2.9
73
95
1
365
28
23
19
28
1.98
42378093--42378426
88
3.8
88
88
3
472
34
21
17
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42387123--42387158
12
3.0
12
95
0
63
41
5
25
27
1.77
42388616--42388654
19
2.1
19
100
0
78
41
5
10
43
1.61
42390861--42390892
9
3.7
9
95
4
57
21
21
12
43
1.86
42392291--42392375
42
2.0
42
100
0
170
28
37
7
27
1.83
42396305--42396387
41
2.0
41
95
0
148
38
22
18
20
1.93
42398896--42399019
64
1.9
64
86
0
176
29
16
16
37
1.91
42399083--42399392
44
7.1
44
70
10
226
36
21
22
19
1.95
42399095--42399392
88
3.4
88
93
2
501
36
21
22
19
1.95
42400171--42400218
12
3.8
12
76
10
51
29
4
4
62
1.32
42400371--42400412
22
1.9
22
90
0
66
23
7
2
66
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297