Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  124  of  297  ( 35593 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43678346--43678387
19
2.3
19
84
12
52
54
4
11
28
1.57
43678968--43679015
20
2.5
20
80
10
55
68
2
6
22
1.23
43679039--43679068
15
2.0
15
93
0
51
40
10
0
50
1.36
43682180--43682535
182
2.0
182
94
1
624
23
11
23
41
1.87
43682660--43682714
27
2.0
27
100
0
110
20
7
14
58
1.60
43699179--43699225
22
2.1
22
84
0
58
48
2
2
46
1.25
43699471--43699503
15
2.1
16
88
5
50
48
6
3
42
1.43
43700577--43700606
14
2.2
13
94
5
51
80
0
0
20
0.72
43711095--43711171
38
2.1
37
95
2
136
14
25
12
45
1.81
43712352--43712400
2
24.5
2
100
0
98
51
48
0
0
1.00
43713672--43713718
21
2.2
22
92
3
78
21
19
38
21
1.94
43716882--43716928
21
2.2
22
92
3
78
21
19
38
21
1.94
43717779--43718065
144
2.0
144
93
1
486
26
24
16
33
1.95
43720746--43720784
3
13.0
3
100
0
78
66
0
0
33
0.92
43722250--43722283
6
5.5
6
89
6
50
5
0
11
82
0.83
43730446--43730503
28
2.1
28
90
0
89
34
6
15
43
1.74
43731109--43731150
21
2.0
21
81
9
50
71
0
2
26
0.98
43742870--43742934
11
5.7
11
70
13
51
56
9
0
33
1.31
43742834--43742904
22
3.2
23
74
18
62
61
4
1
32
1.23
43742849--43742899
26
1.9
27
84
4
68
58
3
1
35
1.28
43742871--43742933
24
2.7
25
78
11
71
57
9
0
33
1.31
43743752--43743820
20
3.5
19
71
15
59
56
4
5
33
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43743925--43743979
25
2.1
25
83
6
65
45
12
7
34
1.70
43742279--43743896
881
1.8
876
92
3
2578
52
7
8
32
1.58
43744255--43744322
28
2.4
28
83
13
79
55
4
4
35
1.40
43745193--43745226
11
3.1
11
91
8
52
79
0
8
11
0.94
43745671--43745728
29
2.0
29
83
6
73
22
0
29
48
1.51
43750074--43750371
144
2.1
144
96
0
551
30
19
15
34
1.93
43757036--43757080
17
2.6
18
89
10
76
51
8
8
31
1.64
43757079--43757142
31
2.1
31
100
0
128
40
12
9
37
1.75
43757716--43757747
15
2.0
17
88
11
50
62
6
0
31
1.20
43757801--43757874
35
2.1
35
97
2
141
48
10
8
32
1.67
43757937--43758008
32
2.2
33
95
5
137
56
5
2
34
1.37
43757950--43758006
19
3.3
19
63
27
54
59
5
1
33
1.30
43757956--43758015
16
3.8
16
70
24
54
61
5
1
31
1.27
43759134--43759168
16
2.2
16
100
0
70
28
22
14
34
1.93
43759695--43760932
74
16.5
74
78
9
1077
32
19
16
31
1.94
43759695--43761466
222
7.8
224
79
8
1658
32
20
16
29
1.95
43761071--43761479
73
5.6
73
93
2
653
33
23
15
27
1.95
43761605--43761794
72
2.6
72
85
4
256
35
23
14
25
1.93
43761290--43762217
315
2.9
315
98
0
1775
36
22
14
26
1.93
43761920--43762109
72
2.6
72
82
5
231
36
22
14
27
1.92
43764950--43765482
269
2.0
269
87
0
769
23
21
18
36
1.95
43770796--43771284
245
2.0
245
97
0
924
30
19
21
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43771342--43771386
17
2.6
18
89
10
76
51
8
8
31
1.64
43771349--43771513
58
2.8
57
87
8
226
44
11
11
32
1.76
43771833--43772043
104
2.0
104
96
0
388
58
5
7
28
1.49
43772150--43772181
15
2.0
17
88
11
50
62
6
0
31
1.20
43772737--43772839
53
1.9
54
94
2
181
26
25
40
7
1.82
43773554--43773588
16
2.2
16
100
0
70
28
22
14
34
1.93
43774115--43774588
74
6.4
74
87
3
650
32
21
16
29
1.95
43774120--43774588
147
3.2
146
88
3
654
32
21
16
30
1.95
43774120--43774588
221
2.1
222
90
2
735
32
21
16
30
1.95
43776762--43776858
42
2.3
43
87
7
146
7
26
7
58
1.51
43777340--43777378
7
5.4
7
82
17
53
58
0
0
41
0.98
43778063--43778223
79
2.0
79
97
0
304
24
28
23
23
2.00
43780237--43780424
26
7.2
26
95
0
322
37
25
5
32
1.78
43785606--43785658
26
2.0
27
85
7
74
24
15
22
37
1.92
43794860--43794964
27
3.9
27
86
9
135
34
21
24
19
1.96
43796587--43796696
26
4.2
26
97
0
184
36
24
5
33
1.79
43800032--43800076
23
2.0
23
81
0
54
71
4
0
24
1.05
43802822--43802901
21
3.8
21
71
21
67
23
27
33
15
1.94
43808723--43808766
9
4.9
9
94
0
70
52
2
2
43
1.26
43809055--43809705
351
1.9
349
86
4
952
44
18
18
18
1.87
43810692--43810732
6
6.8
6
100
0
82
14
0
0
85
0.60
43810925--43811337
44
9.1
44
74
10
271
30
19
15
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43811112--43811337
88
2.6
88
84
0
308
28
19
17
34
1.94
43811112--43811388
44
6.2
44
81
5
243
28
20
17
33
1.95
43831715--43831740
1
26.0
1
100
0
52
0
0
0
100
0.00
43835621--43835661
9
4.5
10
77
22
54
36
0
0
63
0.95
43835620--43835665
16
2.7
17
83
6
58
36
0
0
63
0.95
43836384--43836421
18
2.1
19
85
5
51
31
0
5
63
1.17
43838760--43838998
9
25.6
9
68
16
96
59
2
2
34
1.27
43838760--43838801
16
2.5
17
80
7
50
69
0
0
30
0.89
43838760--43838993
19
12.4
18
69
19
79
58
2
2
35
1.29
43838811--43838907
28
3.4
27
80
12
97
59
4
1
35
1.23
43838928--43838992
20
3.3
20
75
12
64
56
3
3
36
1.30
43841478--43841516
13
2.9
13
84
3
51
46
0
10
43
1.37
43841529--43841570
10
4.1
10
84
3
57
21
4
2
71
1.16
43841529--43841568
20
2.0
20
95
0
71
20
5
2
72
1.15
43842286--43842319
17
1.9
18
88
5
52
26
8
5
58
1.51
43842611--43842656
24
1.9
24
90
0
74
36
4
6
52
1.47
43845713--43845738
3
8.7
3
100
0
52
69
0
0
30
0.89
43845820--43845855
10
3.5
10
92
3
54
25
0
5
69
1.10
43845860--43845926
19
3.2
21
77
16
77
40
0
4
55
1.20
43846093--43846150
25
2.4
25
94
5
102
41
15
8
34
1.78
43849599--43851320
863
2.0
860
97
0
3219
37
9
18
34
1.83
43850999--43852582
799
2.0
789
94
1
2762
38
9
18
33
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43852582--43852710
50
2.5
51
92
2
215
34
17
23
25
1.96
43852686--43852793
31
3.5
31
87
0
162
27
18
28
25
1.98
43852779--43852806
13
2.2
13
100
0
56
39
0
39
21
1.54
43852686--43852884
106
1.9
106
93
2
346
27
19
27
26
1.99
43852717--43852868
75
2.0
75
89
2
234
28
16
28
25
1.97
43852748--43852837
44
2.0
44
93
0
153
30
14
30
25
1.95
43852792--43852884
31
3.0
31
95
3
161
26
19
26
26
1.99
43854011--43854058
24
2.0
24
84
8
62
45
0
2
52
1.12
43853998--43854064
33
2.0
34
91
8
111
44
0
2
52
1.16
43859745--43859783
18
2.2
18
100
0
78
25
10
12
51
1.71
43862295--43862353
29
2.0
29
100
0
118
37
6
6
49
1.56
43864463--43864505
22
2.0
22
100
0
86
48
9
23
18
1.76
43869594--43869724
23
5.8
23
76
12
101
30
16
12
40
1.86
43870147--43870190
21
2.1
21
87
4
63
31
2
2
63
1.19
43870213--43870267
18
2.8
20
81
10
60
25
1
3
69
1.15
43870145--43870268
10
12.9
9
65
21
56
30
3
2
63
1.23
43890747--43890806
30
2.0
30
93
0
102
60
13
0
26
1.34
43892596--43892637
14
2.9
14
80
20
50
23
0
2
73
0.94
43892799--43892825
13
2.1
13
100
0
54
66
0
0
33
0.92
43893147--43893181
16
2.1
17
89
5
54
62
0
0
37
0.95
43893456--43893508
22
2.4
22
84
6
63
45
0
0
54
0.99
43894971--43895000
15
1.9
16
93
6
53
46
46
0
6
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43896053--43896102
3
16.7
3
95
0
73
34
6
0
60
1.21
43899046--43899084
19
2.1
19
100
0
78
30
20
23
25
1.98
43902260--43902292
10
3.2
11
87
12
52
21
0
0
78
0.75
43907018--43907051
7
5.0
7
96
3
61
14
11
14
58
1.63
43911120--43911183
13
4.9
13
82
0
65
34
26
7
31
1.85
43916979--43917219
122
2.0
122
88
4
360
34
21
7
36
1.82
43917293--43917417
47
2.7
47
80
5
137
29
24
16
29
1.97
43917422--43917448
14
1.9
14
100
0
54
14
33
14
37
1.88
43917571--43917687
50
2.3
51
86
1
164
27
23
16
33
1.95
43926123--43926174
15
3.6
15
80
12
56
44
0
1
53
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297