genome.fa.s25.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Length:  101062743

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   

This is table  93  of  297  ( 35593 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33535789--33536149	180	2.0	180	96	0	668	24	19	17	37	1.94
33543542--33543716	40	4.4	40	81	5	189	24	26	27	22	2.00
33543542--33543716	79	2.2	79	83	5	212	24	26	27	22	2.00
33564210--33564381	93	1.8	93	90	2	274	27	27	22	22	1.99
33564203--33564383	46	3.9	46	75	5	186	28	27	21	22	1.99
33573428--33573503	26	2.9	26	78	3	82	42	23	17	17	1.89
33575011--33575053	16	2.6	17	86	13	63	69	9	16	4	1.31
33575009--33575054	17	2.9	15	82	17	58	65	13	15	6	1.46
33580298--33580332	17	2.1	16	89	5	52	17	20	14	48	1.81
33581219--33581285	26	2.6	26	79	9	82	43	20	17	17	1.88
33581689--33581996	155	2.0	155	90	0	490	25	30	18	24	1.98
33583031--33583081	24	2.1	24	82	7	59	19	39	3	37	1.70
33587455--33587483	14	2.1	14	100	0	58	51	13	0	34	1.42
33589262--33589291	14	2.1	14	100	0	60	33	33	6	26	1.83
33607793--33607845	22	2.4	22	96	0	97	28	3	33	33	1.75
33608317--33608751	50	8.6	50	77	3	390	27	18	24	28	1.98
33608321--33608752	151	2.9	151	88	1	634	27	18	24	29	1.98
33608519--33608700	101	1.8	101	87	2	276	28	20	24	26	1.99
33608961--33608990	16	1.9	15	93	6	51	43	0	23	33	1.54
33609865--33609901	16	2.3	16	95	0	65	18	13	24	43	1.86
33615333--33615779	50	8.9	50	77	5	409	26	17	24	30	1.97
33615333--33615773	151	2.9	151	89	2	643	26	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33615333--33615779	101	4.4	98	76	10	366	26	17	24	30	1.97
33620149--33620225	27	2.8	28	94	4	138	20	16	33	28	1.95
33621415--33621448	18	1.9	18	88	5	52	41	11	17	29	1.85
33622259--33622362	54	1.9	54	86	0	145	16	25	29	27	1.97
33623194--33623354	46	3.5	46	76	14	177	22	20	28	28	1.98
33630772--33630942	93	1.8	93	92	0	288	21	22	28	28	1.99
33630776--33630947	46	3.7	46	74	13	172	21	22	27	29	1.99
33637061--33637252	81	2.4	81	84	0	233	32	23	18	26	1.97
33637064--33637248	40	4.6	40	83	1	208	32	23	18	25	1.97
33640674--33640871	99	2.0	99	91	0	324	26	10	21	41	1.85
33642013--33642049	19	1.9	19	88	0	56	32	0	35	32	1.58
33646615--33646650	18	2.0	18	88	0	54	30	22	8	38	1.83
33648639--33648842	40	5.1	40	89	1	293	26	27	22	23	1.99
33673029--33673067	20	2.0	20	89	0	60	28	10	12	48	1.74
33673014--33673080	34	1.9	35	87	3	100	32	8	13	44	1.75
33674424--33674493	27	2.6	27	80	8	79	51	20	2	25	1.61
33677359--33677536	27	6.6	27	82	3	187	26	15	29	28	1.96
33677360--33677515	82	1.9	81	85	3	215	26	15	29	28	1.96
33677356--33677536	82	2.2	81	81	2	211	27	15	28	28	1.96
33685402--33685579	27	6.6	27	83	3	196	27	14	28	29	1.95
33685403--33685558	82	1.9	81	88	3	233	27	14	28	28	1.95
33694290--33694351	14	4.4	14	78	15	56	1	9	11	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33695652--33695790	72	1.9	71	81	9	167	27	30	0	41	1.61
33696806--33696864	21	2.8	21	78	0	64	11	30	32	25	1.92
33706840--33707633	265	3.0	265	97	0	1471	20	16	18	44	1.87
33708582--33708679	52	1.9	49	87	6	142	38	15	11	34	1.83
33710305--33710383	37	2.1	37	86	4	106	25	27	18	27	1.98
33710504--33710615	47	2.4	47	87	0	152	27	31	8	32	1.87
33718830--33718906	13	5.9	13	75	6	66	28	5	25	40	1.77
33718830--33718901	26	2.8	26	77	8	83	25	5	27	41	1.77
33720948--33721121	71	2.4	72	81	7	201	54	13	5	25	1.61
33720981--33721114	71	1.9	72	88	1	207	55	14	5	24	1.59
33721543--33721608	18	3.7	18	91	0	114	37	15	13	33	1.86
33722916--33722987	20	3.2	23	69	13	69	12	25	2	59	1.46
33722916--33723102	44	4.2	44	93	2	306	11	27	3	58	1.48
33722956--33723075	24	5.3	24	63	15	85	10	25	4	60	1.47
33724408--33724446	19	2.1	19	90	0	60	51	20	25	2	1.60
33724523--33724564	19	2.2	19	95	0	75	47	19	28	4	1.69
33724724--33724785	30	2.1	30	96	0	115	30	12	20	35	1.91
33724770--33724855	42	2.0	42	97	0	163	31	19	23	25	1.98
33726707--33726766	29	2.1	28	90	3	93	58	10	0	31	1.31
33728482--33728551	23	3.0	23	73	10	70	77	2	18	1	0.97
33728485--33728551	35	1.9	35	81	6	82	76	2	19	1	1.00
33729060--33729097	18	2.1	18	90	0	58	63	5	5	26	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33733186--33733211	13	2.0	13	100	0	52	38	23	23	15	1.92
33734307--33734385	35	2.2	36	85	10	110	74	10	7	7	1.21
33734333--33734423	30	3.1	29	84	4	119	71	8	7	12	1.31
33736530--33736874	87	4.0	87	84	3	448	29	20	23	25	1.99
33736543--33736874	169	2.0	169	87	0	484	28	21	24	25	1.99
33737272--33737435	50	3.3	50	73	3	159	35	21	18	24	1.95
33737994--33738042	23	2.1	23	81	7	55	75	4	18	2	1.06
33745668--33745799	50	2.6	50	81	0	147	28	22	27	21	1.99
33748411--33748449	19	1.9	19	90	10	60	56	0	0	43	0.99
33750059--33750117	26	2.3	26	84	0	73	44	13	13	28	1.82
33750077--33750134	26	2.2	26	87	0	80	44	13	12	29	1.80
33754216--33754244	14	2.1	14	100	0	58	20	6	27	44	1.77
33756045--33756124	40	2.0	40	90	0	124	31	26	5	37	1.78
33759088--33759196	37	3.0	37	82	4	123	41	24	15	18	1.89
33768382--33768441	19	3.2	19	81	11	70	55	6	0	38	1.27
33768415--33768464	26	1.9	26	87	0	73	48	4	0	48	1.20
33769963--33770005	9	4.8	9	94	0	59	23	37	0	39	1.55
33770223--33770250	9	3.1	9	100	0	56	42	0	0	57	0.99
33785909--33785951	7	6.4	7	92	7	72	13	13	0	72	1.13
33785909--33785951	13	3.2	13	93	6	77	13	13	0	72	1.13
33785936--33786053	57	2.1	58	83	1	148	29	18	4	47	1.68
33788847--33788964	57	2.1	58	87	7	170	26	18	6	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33797383--33797560	27	6.6	27	83	3	196	29	28	15	27	1.96
33797404--33797559	82	1.9	81	86	3	224	28	28	15	27	1.96
33804627--33804664	16	2.4	16	100	0	76	47	18	0	34	1.49
33816091--33816125	17	2.2	16	90	10	54	54	8	14	22	1.67
33820659--33820690	16	2.0	16	100	0	64	50	25	0	25	1.50
33822193--33822258	13	5.1	13	80	7	80	36	22	7	33	1.83
33826696--33826720	6	4.2	6	100	0	50	20	0	0	80	0.72
33827118--33827157	21	1.9	21	84	0	53	67	0	2	30	1.04
33827409--33827438	15	2.0	15	93	0	51	73	10	0	16	1.09
33827914--33828056	1	143.0	1	67	0	79	16	0	0	83	0.64
33827912--33828056	6	24.2	6	100	0	290	16	0	0	83	0.65
33828599--33828627	15	2.0	15	93	6	51	48	0	0	51	1.00
33834500--33834573	31	2.4	31	79	0	85	40	8	10	40	1.70
33838688--33838717	15	2.0	15	100	0	60	26	13	13	46	1.80
33839181--33839308	63	2.0	63	96	0	238	44	19	7	28	1.78
33840185--33840379	42	4.6	42	81	9	202	31	25	14	27	1.95
33845799--33845954	78	2.0	78	100	0	312	32	28	8	30	1.88
33846591--33846695	53	2.0	53	98	0	201	51	16	13	19	1.76
33847237--33847424	42	4.5	42	79	7	186	31	25	14	28	1.95
33855343--33855370	14	2.0	14	100	0	56	28	21	28	21	1.99
33857071--33857100	14	2.1	14	100	0	60	13	13	36	36	1.84
33860838--33860863	4	6.5	4	100	0	52	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33861535--33861630	40	2.4	39	87	1	138	33	14	23	28	1.94
33861851--33861905	25	2.2	26	78	9	62	61	7	9	21	1.50
33862164--33862198	8	4.5	8	89	7	54	14	0	48	37	1.44
33862182--33862227	22	2.1	22	87	0	65	26	0	32	41	1.56
33862257--33862315	24	2.5	24	83	5	77	38	1	0	59	1.08
33862491--33862531	21	2.0	21	85	4	57	19	0	36	43	1.51
33862823--33862849	9	3.0	9	100	0	54	33	0	11	55	1.35
33864489--33864519	10	3.1	10	95	0	53	16	19	12	51	1.76
33866436--33866708	43	6.3	43	90	0	357	19	16	32	31	1.94
33869579--33869694	61	1.9	59	87	3	169	52	4	3	39	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297